Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g57770 | OGI:04063510 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:34406750-34408502 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAAGTTCCCCACATAGGCTCGTGTCGCTCCAGCCCCAGGGGCGATGCGAGCGCCCCCACACGCGCCGGCCGCCGCCGCGCCTTCCCCCTCCCCTTCGCCTCGCCGCCGCCCGAGTGGCCCACCGGAAAGCCGGCCGGGCGCAAGGACGGCGGCGGCGGGGCATCCCGGCGCCCGTGGCGGCGGAGGCGGCCAGATCCGGGGCTGGGGAGGCGACGGCGGCGGGGCAGAGAAGGTGGCGGCGACGGGGCGGACGAGGCGGCGGCGGCGACGGGGCGGACGAGGCGGCGCTGGCGGCGGCCGACGGGGCGGAGGAGGCGCTGGCGACGGTGGCGACAGGACGGGGGTGGAGCTGGCAGCAGGGACAGGGCGGGTCCGGCGGCGCGCGACGTCACCGAATCTGGCAACCTCCTCGCTGGATCCGGCGCCCCCCAGTCCGGATCTGTCCTCTCCGGCGTGGGAGGCCGGATCCCCTCCGTCGAGGCGGCGACCGGCCAGCATACCGACGACAGTGTGCAGCCGGGTGTGGAGGCGGGGAAGAAAGAGACCGGCGGCTGTGTGGGCGCAGCGTTGGCAGCGGGACCCGCGTGAGAGACGCGGCTTGAGGCCGGCACGGCGCGAAGACAGCGGCATTGGTCCCTGTGCGGCGACGGCGCGGTGCTCGGCGGCGATGACGGCGGTGCCTCCCCAGATCCGCGCCTCTCGACCGGATCTAGAGGGTGGTCGGCTGTGGTGGTCGGCGACGGCGGTCGACTTGCGACAGCTGGTGACGGCAGTTGGCAACGGCGGCGACGGGTGGTTGCGGCAGTTGGCGGCGGCGACGTCGGCCGACGACGCCGGCGGAGGACTTGGCGGCGGCGTGGCGGAGGGCAACAGTGAAGTGGCCGCTAGCAGTGGCGGTGGCTCGCGGAGACGGTGGCTGGTGGTCGCGACAGCGGTCACCAGAGGCATGGCGGCCTTGGACGGCTAGCCGAGGGCGTGGGAGACGGCTGCATTTGGCCGGCGCAGCATCGTCTGGTGGAAAGGTCGGAGACCGGCTTGGCGCAAAGAGGCGCAGCCGATGGCAGTGGAGGCCGGCTAGTGCGAGAGGCGCGGGCGGCGGAGTTAGAGGCCGGCTTGGCGCGAGAGGCGCGGCCGGCGGTGAAGGAGGCGACTTAGGTGTGAGGAGGAGCTGCTGGTGGGTGTAGCGCGGTCTTCGGCGCACGAAGGCTGGCCGGCGAGGGACGCCGGTGCAGGGGTCCCACATGTCGGTAGAGCTTGTGTGGTGGTGGAGCATCGGTGTGTCAGCTGTGGATCTTACCCCTCAAGGGTGATTGCCGGACGAAAGCTCAGTCTTGGCTCCTTTGAGTTTCGACGGACGGCGGTGGCAGTTTTTCTGTCGCTTCTCTTCTTGAAGACGTCGTTTTGGCATCCCCTAGGGGGCAATCTCGGTTGTCCCTTTGTTGGTCTAGTGGCAGCCGGTCACGCTTAGCGGCGGCCGGTCCGATGCTAGCCTTCTCCTGGGCTTGTGTGTTGGCGATGTCGGTGTGTGGGTGGTGGTATTTTTTCCTTTTTCCTGTTTACGACCCTCTAGGGTTGTAATCTTGTAATTTTTTCCTGCTCTATCAATAGAACTTCGCACTGTCTCGTGCGAGTCGTTCAAAAAAAAAAAGTAAAGTAACAGAAACTTGACCCTATCCGTCTTGGTTGATGGGTTTGCTCCAATCATTATAAAATAAACCTTGAACAGGAAATCAGTCTACAATATATACAGAA
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| CDS seq | ATGCGAGCGCCCCCACACGCGCCGGCCGCCGCCGCGCCTTCCCCCTCCCCTTCGCCTCGCCGCCGCCCGAGTGGCCCACCGGAAAGCCGGCCGGGCGCAAGGACGGCGGCGGCGGGGCATCCCGGCGCCCGTGGCGGCGGAGGCGGCCAGATCCGGGGCTGGGGAGGCGACGGCGGCGGGGCAGAGAAGGTGGCGGCGACGGGGCGGACGAGGCGGCGGCGGCGACGGGGCGGACGAGGCGGCGCTGGCGGCGGCCGACGGGGCGGAGGAGGCGCTGGCGACGGTGGCGACAGGACGGGGGTGGAGCTGGCAGCAGGGACAGGGCGGGTCCGGCGGCGCGCGACGTCACCGAATCTGGCAACCTCCTCGCTGGATCCGGCGCCCCCCAGTCCGGATCTGTCCTCTCCGGCGTGGGAGGCCGGATCCCCTCCGTCGAGGCGGCGACCGGCCAGCATACCGACGACAGTGTGCAGCCGGGTGTGGAGGCGGGGAAGAAAGAGACCGGCGGCTGTGTGGGCGCAGCGTTGGCAGCGGGACCCGCGTGAGAGACGCGGCTTGAGGCCGGCACGGCGCGAAGACAGCGGCATTGGTCCCTGTGCGGCGACGGCGCGGTGCTCGGCGGCGATGACGGCGGTGCCTCCCCAGATCCGCGCCTCTCGACCGGATCTAGAGGGTGGTCGGCTGTGGTGGTCGGCGACGGCGGTCGACTTGCGACAGCTGGTGACGGCAGTTGGCAACGGCGGCGACGGGTGGTTGCGGCAGTTGGCGGCGGCGACGTCGGCCGACGACGCCGGCGGAGGACTTGGCGGCGGCGTGGCGGAGGGCAACAGTGAAGTGGCCGCTAGCAGTGGCGGTGGCTCGCGGAGACGGTGGCTGGTGGTCGCGACAGCGGTCACCAGAGGCATGGCGGCCTTGGACGGCTAG
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| Protein seq | MRAPPHAPAAAAPSPSPSPRRRPSGPPESRPGARTAAAGHPGARGGGGGQIRGWGGDGGGAEKVAATGRTRRRRRRGGRGGAGGGRRGGGGAGDGGDRTGVELAAGTGRVRRRATSPNLATSSLDPAPPSPDLSSPAWEAGSPPSRRRPASIPTTVCSRVWRRGRKRPAAVWAQRWQRDPRERRGLRPARREDSGIGPCAATARCSAAMTAVPPQIRASRPDLEGGRLWWSATAVDLRQLVTAVGNGGDGWLRQLAAATSADDAGGGLGGGVAEGNSEVAASSGGGSRRRWLVVATAVTRGMAALDG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g57770 | LOC_Os04g57770.1 | Chr04 | 34406750 | 34408502 | + | MSU_osa1r7 | ||
| CDS seq | ATGCGAGCGCCCCCACACGCGCCGGCCGCCGCCGCGCCTTCCCCCTCCCCTTCGCCTCGCCGCCGCCCGAGTGGCCCACCGGAAAGCCGGCCGGGCGCAAGGACGGCGGCGGCGGGGCATCCCGGCGCCCGTGGCGGCGGAGGCGGCCAGATCCGGGGCTGGGGAGGCGACGGCGGCGGGGCAGAGAAGGTGGCGGCGACGGGGCGGACGAGGCGGCGGCGGCGACGGGGCGGACGAGGCGGCGCTGGCGGCGGCCGACGGGGCGGAGGAGGCGCTGGCGACGGTGGCGACAGGACGGGGGTGGAGCTGGCAGCAGGGACAGGGCGGGTCCGGCGGCGCGCGACGTCACCGAATCTGGCAACCTCCTCGCTGGATCCGGCGCCCCCCAGTCCGGATCTGTCCTCTCCGGCGTGGGAGGCCGGATCCCCTCCGTCGAGGCGGCGACCGGCCAGCATACCGACGACAGTGTGCAGCCGGGTGTGGAGGCGGGGAAGAAAGAGACCGGCGGCTGTGTGGGCGCAGCGTTGGCAGCGGGACCCGCGTGAGAGACGCGGCTTGAGGCCGGCACGGCGCGAAGACAGCGGCATTGGTCCCTGTGCGGCGACGGCGCGGTGCTCGGCGGCGATGACGGCGGTGCCTCCCCAGATCCGCGCCTCTCGACCGGATCTAGAGGGTGGTCGGCTGTGGTGGTCGGCGACGGCGGTCGACTTGCGACAGCTGGTGACGGCAGTTGGCAACGGCGGCGACGGGTGGTTGCGGCAGTTGGCGGCGGCGACGTCGGCCGACGACGCCGGCGGAGGACTTGGCGGCGGCGTGGCGGAGGGCAACAGTGAAGTGGCCGCTAGCAGTGGCGGTGGCTCGCGGAGACGGTGGCTGGTGGTCGCGACAGCGGTCACCAGAGGCATGGCGGCCTTGGACGGCTAG
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| Protein seq | MRAPPHAPAAAAPSPSPSPRRRPSGPPESRPGARTAAAGHPGARGGGGGQIRGWGGDGGGAEKVAATGRTRRRRRRGGRGGAGGGRRGGGGAGDGGDRTGVELAAGTGRVRRRATSPNLATSSLDPAPPSPDLSSPAWEAGSPPSRRRPASIPTTVCSRVWRRGRKRPAAVWAQRWQRDPRERRGLRPARREDSGIGPCAATARCSAAMTAVPPQIRASRPDLEGGRLWWSATAVDLRQLVTAVGNGGDGWLRQLAAATSADDAGGGLGGGVAEGNSEVAASSGGGSRRRWLVVATAVTRGMAALDG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.847334 | 0.665443 | 0.874799 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g067409A | RBH | 2.532220 | 1.948447 | 6.319752 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0012530 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013360 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030910 | SBH | 0.000000 | 0.186018 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031150 | SBH | 1.338664 | 18.189276 | 25.627722 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0542600 | RBH | 0.9255985 | 5.892707 | 10.258721 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029800 | SBH | 0.000000 | 0.000000 | 0.405911 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0548300 | RBH | 2.339071 | 5.9583315 | 21.007477 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0030230 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021320 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023450 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030750 | SBH | 0.324517 | 0.797446 | 2.792115 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0012910 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012050 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029950 | SBH | 0.000000 | 0.000000 | 4.405804 |
