Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g56060 | OGI:04098140 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:33386622-33391644 | ||||||||
| Gene Symbol | RLCK167, OsRLCK167 | ||||||||||
| DNA seq | AGTTCGCATCGCGCTGTTCCCTCCTCGGCTCCTCGCGCAGGAGCACTGGCACGGACAGTGACATCGTCTTCCCTTCACCTCCTCGTCCTTCCCTCTCGTGGCATCGCATCGCATCGTGTCCTCTGCGACTGCGAGAGTGCGTGTGTGCAGCGCGCGCTCGTCGAGACAGACAGCAGCAGCAGTTGCTCTTTAATGCCGGTGCCTTGCTGAACAGAGCAAGGTCTCTCCAATGGCCTTGAGGCATTCAATGCGCCCGTAATCCATCTCTTGAACGGCCGTGTGTGTGTTCTTGGCGTGTTGGTGTGCGTGGATTGGGTGGGTGAGGAGGATGAACTATCTCAGGAGCCGGAGCCTCAAGCGGCTCCTGTCTCTCGGTCGCCGGAGCAACAATTCCGATGAGTCCAATGACGAGTGCGTCTTCGTCGTCGACCAGCCGCCGCCGTCGAACAAGCCTACTTGGAGGTGCTTCTCGTATGAGGAGGTCAACAAGGCCACCAATGGCTTCCACCGAGGTACAGTAGATATATATTCTTGTTGGTTTCTTTGGGGATTTGGCATTGAGAACATGGCGCCATGACAGACAATATGGTGGGGAGAGGCGGGTACGGCGAGGTGTACCGCGGCGTGCTGGAGGACGGGAGCGCCGTCGCGGTGAAGCGGCTGTCGCCGGCGGCGGCGGCGGACGAGAAGAAGGAGAAGGACTTCTTGACGGAGCTCGGCACGGTGGGGCATGTCCGGCACCCCAACGTCACGGCGCTGCTCGGCTGCTGCGTCGACCGGGGACTCCACCTCATCTTCGAGTTCTCCGCCCGCGGCTCCGTCTCCGCCAACCTCCACGACGAGAGGCTGCCGGTGATGCCGTGGCGGCGGCGCCACGGGATCGCCGTCGGCACCGCGAGGGGGCTCCGGTACCTCCACAAGGGTTGCGCGCGCCGGATCATACACCGCGACATCAAGGCGTCCAACGTCCTCCTCACCGCCGACTACGAGCCCCAGGTTCTTCCTCCTCCTCTACCTCTCCTCTGCTCGCTATCTGTTCGTCCGGTTGCTCACCGAGAAAGAATTGAATTCGCCTCAGATTTCGGACTTCGGCCTCGCCCGGTGGCTGCCGTCGGAGTGGACGCACCACGCCATCGCGCCCATCGAGGGCACCTTCGGGTGAGCACACATACGTTCTCCATGGACCATGGCCATGGCAGTAAAAACAGGGAGACGAGACGACGCTGAGCCGACGACATTGATGTGCAGGTGCTTGGCGCCGGAGTACTTCACGCACGGCATCGTGGACGAGAAGACGGACGTGTTCGCCTTCGGCGTCTTCCTCCTCGAGCTCATCTCCGGGAGGAAGCCGGTGGACGGCTCCCACAAGAGCCTCCTCGCCTGGGTACGTACGTAGCACATTCATACGCCATCGCCGCCGTCGCGTCGCGCATCGCACAACACGCGCACGGCGGCGCGCTTGTGGCGGCCAGGTGTTCGGCCAGGGACATTGACATTGGTGCCGTGGCGCGTGCATATGCAGGCGAAGCCGTACCTGAACGACTGCGTGGCGCAGGGGCTCGTGGACCCGCGCCTCGGCGACGGCGGCTACGACGGCGCGCAGCTCAGGCGGCTCATGTTCGTCGCGTCGCTCTGCGTCCGGCCCGCCGCGGCGTGGCGGCCTACCATGACACAGGTAAGAAGAAAAGGAAAAAGAAAGCAAACATTTTTTTTTCTGCAACTGCACTTGCTGTTCCATCTAGGAGTAGACTAAATTGACAACAATTTAGAATCCATAAATAAATGTGAGAGAAAAAGCATCCGGATTGAACTGTCCATGTTAACAAGTACAGTAAAATTGACACTGAACAATAATTGAATTTCATTATTTTCCTACCAAGGTACTCCACTCTAGTACTAGTACTACAAGAAATGGACCATTCATCATTGTGAAGGGTTTCTTTGCTGACATCAGCTCCGAAATGGCATGGTAGCTTGGGATTAGTTGGCGACCTAATCGTTCTAGAGTGTGCAAAACACTTAGCTTAGGAATGTTAGAGTAGGTCTGACTCTGATCTGACAGTCTGTGTAGCATTGCAATGCATGGGCCACCAAACAAAATCTCTCAACATCACCCAAAGAGGACAAGAGCTAGGAAAGCTTTAATTCCTTTGTGGTGTGGTGTGCTAATTGGGTTGCTGCTTGACCCAGCAACTCAAATAAATATGGCATTGCAATTTGCAACCACTGCAATCTTCTTCAGTAGATTGTTAATTACATAGGGGAAACTTGATGGTTTCTTATGGTGGCAGAGTCTAGTTGATTTTCGTTGGAGTTTGCGTATCCACATACACATTGGTTGTCAATCTTGTTCAGGTAGGTTGTTAATTATATAGAGGAAACTTGATAATTTCTTTTGGAGCATAGTCTGGTTGATTTTCGTTGGAGTTTGCATATCCACATACACATTCGCTATAAACGGTTTGTATATGGCATTATGGTAGGTTCAACAGCTCTATCAAACCATACAACGACATGAAAAATCTCAACAGAAATCAGGAGAACCGGTATACAGGAATAATTGTTAACGGCTGGTGGATAAATTGATGAGGGGATCTAGTCTAAGGGACATCATTGTATTATATGGATTATCAAGCAAGTTCTCTAATAACACTGGTCTAAAAGAAGTTCACTAATAGTACTCAAGTCATACTCTGTAGATGACCTCATTACTTTTTTCATGGCTGGTGCTAGGTAGCTATCTCACTCAAGTATAATTCTCCTATCTGAAGTTATATTTTATACAGCATAATCTGTATATGCTTGGTCTAATCAGACATCCGGGTGCCCTAATGCAATGGCAATGTATGATGCTAATGTGATTGTCCTACTGCTACTAGTCTAATCCATATCATCCACTTGCCTCCTATGGTTGTTAAATACTGCCACATTGTGTTGTGTCAGTTGTGACAGCCACTCCTTTGGTTTTTATTTTATCTTGCTAGCATCTAGCAAGCCAGTTGGCGAGTAACATTGCACCAAACTTGATTGCGTATACCTTGTCTTGGTCTGTCATAGTGTGGTGAGATCCCATTTTTAATGTGAAACTAATTGAATCTCTTTCAGTAGGATTCCACAGTGTGTGGGATGATAATGTTTGTTTATGTACTACAATACAGAAACAGAGGTATCAGTTATGTATGAGGATATCATACATGAAAGAATAAGTTGAACCTAAGGAAGGTAGCTTGAACACATCAATGCATATCATCAATATTGACTTCTTTGTTTTTTCCCCCCAAACAGACCCTAAAGCTTGATTTACTCTTCACCTTTTCGTTTCGTTTTTACTACGTAAGGCCCACATATTGTTGTGTTCCAATACTTGAAAGTTTCAATAATTCTTGGGTATTTTCCAAAAGGTACACACTATAAAATAATTTCAAAAACTCAAGCAACAAAACCGAATTTTTAGACAGTAAATAAAAGATGGTAAGTATCTTGTAGTTCTCAAGTTCTTAGTATTCAAAGTGCAATTTTACTTTTTCCAGACCAAAGGATAGTCTGATGAAGCAAGGGGAAAAAGAACTCTAAATATTGTTTTTTAGATGGAAAATATAACAGCATTATCATTTCAAAGAATGTATAACTTCTTTTATGGACATATTGTATTCGCAATCTTTCGTAATAGATGGTATTTACAAGTCACCAACAGTTGCAACCAGAATTACTCTTTTAGTTTAGACCTTCAAGACTTAAAGCAAACAAGGGGAAAGCTTACCCATTCTTACTAGACCAAGTAGTTGCACAAAGCCACAGAGTAATCTTACAATTTTACTTGACTTGAGAAGAAGACAAGAGTTTGGCCTCATCTAAAATGTGGCCGGTTTCTTGATTTTAGAAGGGACATTGGATGCTCTGTAGCCTCCTACCTTCTCCATTATCCTTTTCTTCCCCCCATTGATTCACGAGAAGCCCAGAGCCAGGTGAAGTGGGGGACACAGGACAGCTCAAGAACATAAATCTTGGGACAAACGTACAAAACATGCCACCCCAATGTGCACATAGAAAACTTGGTCACCTCTAATCAAGATTTAATCATGCACTACTTTATTAGTATTGCATTGCACCATACTACCATTGGCACACAAGCTACCTACTGTGAACAGTTACTTTGGTTTTAACTTCCAAATGCCTTGGAAGGTGGACATATACATACATTCAGACATTCAGTGTCAATACCATGTTTTCAGAAATCACAACTAAATTTAGCACTTTCAGCAAATAGGTTAGCAAGCAGGGTTATGCAGTTTGTTAACAAGCTATTGCTTACAACTGACCGACGATATCTAGTTGAATTTGTTATGAGAACAATCTTGATTTTCTGAGCAACAAACTTGATTTTTCAATGCATTGCGTTTGGCTTTCTTGTTTCTCTAATTGCAAAATTCAGTGCATTTTGTCATCGTGTATCTGGTATCTTGTCAAAAAAAAAAATCCAACTACTGGGAACATCCCTGGAAAGTTTAGAATCATTTATCCAGTAGTTACTAGTACCAACAACCGGTCAATTGTAGAGCGTACTGCAGCTCAACTGTGTTTCGTACTGCCACTTAATAAATTTGCAACTGTGTTGTACTTAACTGACTCGGTTCACATGGGGAAATGGCAGGTCCTGGAGTTATTGGAGTCCGGCGAGATATCTCAAGATCAATGGCTGATGCCCGAGGAGGAGGAGGAAGACGAGTTTTGGGATTTCGACGATCTCGACGACTTCGAGGACGACGACGACGACGATGATGACAACTATGATAACGACGATGAATCGGATTCTCCCTCGATATCGTCGTCAGCGTGCAGCATCCACGCCAATGATTAGCCCCAAAATATTTGAGTCTGTCAGTCTTGACAGAGTGCCCCAATTGGTTTTGGTTTTTAGGGGATACTATGATCGATGGGATTATATTAGTGTACATAAACCACCTAGACAATAGTAAATTCAGAAAAGAAAAAAAAACTGTTCAGGCCCATGGTTTTGATCATC
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| CDS seq | ATGAACTATCTCAGGAGCCGGAGCCTCAAGCGGCTCCTGTCTCTCGGTCGCCGGAGCAACAATTCCGATGAGTCCAATGACGAGTGCGTCTTCGTCGTCGACCAGCCGCCGCCGTCGAACAAGCCTACTTGGAGGTGCTTCTCGTATGAGGAGGTCAACAAGGCCACCAATGGCTTCCACCGAGACAATATGGTGGGGAGAGGCGGGTACGGCGAGGTGTACCGCGGCGTGCTGGAGGACGGGAGCGCCGTCGCGGTGAAGCGGCTGTCGCCGGCGGCGGCGGCGGACGAGAAGAAGGAGAAGGACTTCTTGACGGAGCTCGGCACGGTGGGGCATGTCCGGCACCCCAACGTCACGGCGCTGCTCGGCTGCTGCGTCGACCGGGGACTCCACCTCATCTTCGAGTTCTCCGCCCGCGGCTCCGTCTCCGCCAACCTCCACGACGAGAGGCTGCCGGTGATGCCGTGGCGGCGGCGCCACGGGATCGCCGTCGGCACCGCGAGGGGGCTCCGGTACCTCCACAAGGGTTGCGCGCGCCGGATCATACACCGCGACATCAAGGCGTCCAACGTCCTCCTCACCGCCGACTACGAGCCCCAGATTTCGGACTTCGGCCTCGCCCGGTGGCTGCCGTCGGAGTGGACGCACCACGCCATCGCGCCCATCGAGGGCACCTTCGGGTGCTTGGCGCCGGAGTACTTCACGCACGGCATCGTGGACGAGAAGACGGACGTGTTCGCCTTCGGCGTCTTCCTCCTCGAGCTCATCTCCGGGAGGAAGCCGGTGGACGGCTCCCACAAGAGCCTCCTCGCCTGGGCGAAGCCGTACCTGAACGACTGCGTGGCGCAGGGGCTCGTGGACCCGCGCCTCGGCGACGGCGGCTACGACGGCGCGCAGCTCAGGCGGCTCATGTTCGTCGCGTCGCTCTGCGTCCGGCCCGCCGCGGCGTGGCGGCCTACCATGACACAGGTCCTGGAGTTATTGGAGTCCGGCGAGATATCTCAAGATCAATGGCTGATGCCCGAGGAGGAGGAGGAAGACGAGTTTTGGGATTTCGACGATCTCGACGACTTCGAGGACGACGACGACGACGATGATGACAACTATGATAACGACGATGAATCGGATTCTCCCTCGATATCGTCGTCAGCGTGCAGCATCCACGCCAATGATTAG
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| Protein seq | MNYLRSRSLKRLLSLGRRSNNSDESNDECVFVVDQPPPSNKPTWRCFSYEEVNKATNGFHRDNMVGRGGYGEVYRGVLEDGSAVAVKRLSPAAAADEKKEKDFLTELGTVGHVRHPNVTALLGCCVDRGLHLIFEFSARGSVSANLHDERLPVMPWRRRHGIAVGTARGLRYLHKGCARRIIHRDIKASNVLLTADYEPQISDFGLARWLPSEWTHHAIAPIEGTFGCLAPEYFTHGIVDEKTDVFAFGVFLLELISGRKPVDGSHKSLLAWAKPYLNDCVAQGLVDPRLGDGGYDGAQLRRLMFVASLCVRPAAAWRPTMTQVLELLESGEISQDQWLMPEEEEEDEFWDFDDLDDFEDDDDDDDDNYDNDDESDSPSISSSACSIHAND |
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| Function | Probable receptor-like serine/threonine-protein kinase At5g57670 [UniProtKB/Swiss-Prot:Q5XF57] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g56060 | LOC_Os04g56060.1 | Chr04 | 33386622 | 33391644 | + | MSU_osa1r7 | ||
| CDS seq | ATGAACTATCTCAGGAGCCGGAGCCTCAAGCGGCTCCTGTCTCTCGGTCGCCGGAGCAACAATTCCGATGAGTCCAATGACGAGTGCGTCTTCGTCGTCGACCAGCCGCCGCCGTCGAACAAGCCTACTTGGAGGTGCTTCTCGTATGAGGAGGTCAACAAGGCCACCAATGGCTTCCACCGAGACAATATGGTGGGGAGAGGCGGGTACGGCGAGGTGTACCGCGGCGTGCTGGAGGACGGGAGCGCCGTCGCGGTGAAGCGGCTGTCGCCGGCGGCGGCGGCGGACGAGAAGAAGGAGAAGGACTTCTTGACGGAGCTCGGCACGGTGGGGCATGTCCGGCACCCCAACGTCACGGCGCTGCTCGGCTGCTGCGTCGACCGGGGACTCCACCTCATCTTCGAGTTCTCCGCCCGCGGCTCCGTCTCCGCCAACCTCCACGACGAGAGGCTGCCGGTGATGCCGTGGCGGCGGCGCCACGGGATCGCCGTCGGCACCGCGAGGGGGCTCCGGTACCTCCACAAGGGTTGCGCGCGCCGGATCATACACCGCGACATCAAGGCGTCCAACGTCCTCCTCACCGCCGACTACGAGCCCCAGATTTCGGACTTCGGCCTCGCCCGGTGGCTGCCGTCGGAGTGGACGCACCACGCCATCGCGCCCATCGAGGGCACCTTCGGGTGCTTGGCGCCGGAGTACTTCACGCACGGCATCGTGGACGAGAAGACGGACGTGTTCGCCTTCGGCGTCTTCCTCCTCGAGCTCATCTCCGGGAGGAAGCCGGTGGACGGCTCCCACAAGAGCCTCCTCGCCTGGGCGAAGCCGTACCTGAACGACTGCGTGGCGCAGGGGCTCGTGGACCCGCGCCTCGGCGACGGCGGCTACGACGGCGCGCAGCTCAGGCGGCTCATGTTCGTCGCGTCGCTCTGCGTCCGGCCCGCCGCGGCGTGGCGGCCTACCATGACACAGGTCCTGGAGTTATTGGAGTCCGGCGAGATATCTCAAGATCAATGGCTGATGCCCGAGGAGGAGGAGGAAGACGAGTTTTGGGATTTCGACGATCTCGACGACTTCGAGGACGACGACGACGACGATGATGACAACTATGATAACGACGATGAATCGGATTCTCCCTCGATATCGTCGTCAGCGTGCAGCATCCACGCCAATGATTAG
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| Protein seq | MNYLRSRSLKRLLSLGRRSNNSDESNDECVFVVDQPPPSNKPTWRCFSYEEVNKATNGFHRDNMVGRGGYGEVYRGVLEDGSAVAVKRLSPAAAADEKKEKDFLTELGTVGHVRHPNVTALLGCCVDRGLHLIFEFSARGSVSANLHDERLPVMPWRRRHGIAVGTARGLRYLHKGCARRIIHRDIKASNVLLTADYEPQISDFGLARWLPSEWTHHAIAPIEGTFGCLAPEYFTHGIVDEKTDVFAFGVFLLELISGRKPVDGSHKSLLAWAKPYLNDCVAQGLVDPRLGDGGYDGAQLRRLMFVASLCVRPAAAWRPTMTQVLELLESGEISQDQWLMPEEEEEDEFWDFDDLDDFEDDDDDDDDNYDNDDESDSPSISSSACSIHAND
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.392558 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0654600 | RBH | 0.0 | 0.0 | 1.524973 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g56110 | SBH | 3.534430 | 4.563599 | 0.236886 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0654600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029300 | RBH | 0.0 | 18.452196 | 1.759527 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0030060 | RBH | 0.0 | 0.936764 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029630 | RBH | 0.0 | 10.265158 | 0.670571 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0029450 | RBH | 0.0 | 0.661366 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029720 | RBH | 0.0 | 13.679692 | 2.236623 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0525900 | RBH | 4.506388 | 4.072809 | 0.3432525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028350 | RBH | 0.0 | 0.308228 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0530500 | RBH | 4.915254 | 0.441649 | 4.4510365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0028800 | RBH | 0.0 | 0.220925 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028640 | RBH | 0.0 | 2.170286 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028750 | RBH | 0.0 | 4.160587 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029330 | RBH | 0.000000 | 0.171499 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029310 | RBH | 0.0 | 9.798886 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028770 | RBH | 0.0 | 2.522388 | 1.431107 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028550 | RBH | 0.0 | 6.065211 | 0.0 |
