Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os04g54880 OGI:01011440 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr04:32643502-32647455
Gene Symbol -
DNA seq

ATGGATAAACAAGTGAAGAACCACAGACCTTCTGATGGTACGGATGGATCAAGGTATGTTGTTCTGTTTCAGTGATTTATTTCAGTATGTGCCGCTGGTTTTTTTTCTCTGAATTTCGCCGTGTGAACTTGAGCAATTCTAAATCATCAATTCAGGGAAATTCTTATGGACGAGCGCAACCCTACCATGGACATAGTAGATGGTATTAGTCAATCTGTCCATGATTCACAACCGGATGGTGGTCAGTCAAGGTTGGATCGTAGCTTCCGTGAATTTAAAACTCTGTAAATGGTAGCCAGATACTGACACATCTTGATTGTGTTATGAAGCCGTGTAGCAATGGAGGAGGACGTGCCGTCGCGGGTTGGATCACATGATTCAGGGCATGGAATTCCAGAGACAAGGTATGTGCATGGCTAGGTGTCAGCTGAGCATTCACTTTAAAGCAGTATATACTACATAGAAATGTTCAGTATGTGTCACATGAGAAAGTTCAGTATATGCTATCTTCTAGGAAAGTTCAGTATGTATCACATAGAAAAGTTCAGTATGTGCTATATTGCAGAGGAGTTCAGTATGTTGCACAGAAAATTCAGAACATACTATATGCTGTCGTATAACAAAGTTCAGTACATAGCCTCCCATAGAAAAATTCAGTATATATGTGAAAAATTCAGTAAATACTGGTGCGTATCAAAGTTCAGACTACGAATCACTATGGAAAGATTTAGTATACGTGTGGAAAATGCAGTATATGCTATCGTCTAGAAAAATTCAGTACGTAACCCATAGAAAAATTCAGTACATACTATCATTCAACATAAATCAGAAAGAACCCCTCCATTTTAAAAAATGAGTATATACAATCATCTAACAAAGTTCAGAACAAAGCTCCCCATATTTTTTTGTTAGTAGTACAACATATATTTTTTTTAAATTTGCAGTAAGTACTGATTATAAATTAGGTTGTTTTTTGTAAACTACATTTTCAGTTAGTAGTAGTATATGCTATTTTTAAATATAGTGTCTCCAATACAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGGTTTGTATCAGCATGTTACGGATTTTTACGATTTTTTTTTTAGCCAGGATATTGGTGGTATTTTCTGAAAACTGATTGTACATTTTCTTTTCAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTGGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGATCGCATGAATACTAAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGGTACATACATTATGTAACAATATCTTAGTAGCAGAAATTTACCTAAATAAAGACTTGACGTACTATGTGTTAATTTCGAAATCTTTTATGCAGGGGAGGAACCCAAAAACCAAGAAGCCTTCCGTTCGAATTGGGTGCCCAGCAATGATGAAGATAAATATGTCTGGAGCTGGTAGTGGCTGGTCAGTAACAAAGGTTGTTTCTGCGCACAACCATCCTATGAAAAAAAGTGTAGGAGTTACTAAGAATTATCAGTCGCACAATCAAATAGATGAGGGGACTCGTGGTATTATTGAAGAGATGGTAGACAGTAGTATGAGTCTTACAAATATGTATGGTATGTTGTCTGGGATGCATGGCGGACCTTCCATGGTTCCATTCACGAGAAAAGCTATGGATAGGGTTGCTTATGCAATTAGGCGGGATGAGAGCAGCGATGACATGCAAAAAAACACTTGATGTCTTGAAGGATTTGCAAAAAAGGAGCAAGAATTTCTTTTATAGTATACAAGTTGACGAGGCTTGCCGTGTGAAGAACATATTTTGGTCTCATGCTGTGTCCAGATTGAACTTTGAGCATTTTGGTGATGTCATCACATTTGATACTACCTACAAAACAAACAAGTATAATATGCCCTTTGCACCATTTGTTGGTGTAAACAATCACTTTCAGAGCACCTTCTTTGGTTGTGCCCTGCTTAGAGAAGAGACTGAAGAATCATTTACATGGTTATTCAATACATTCAAAGAGTGCATGAATGGGAAGGTTCCTATTGGAATATTAACAGGTATGTGAGTATTTGGCCGAATTTATAATTTGGAATGAATTCGTTATACTTTACTTATTTTAAGTATATGATGGGTTATTCATTGGATGCTTATTATTGTCCTTAATTTTGCAGACAATTGTCCTTCCATGGCAGCTGCCATTAGAACAGTATTTCCCAATACAATCCATCGTGTGTGCAAGTGGCATGTACTGAAGAAAGCAAAGGAATTTATGGGGAACATATACTCCAAGCGTCATACATTCAAGAAAGTATTTCATAAGGTTCTTACGCAGACACTAACAGAGGAGGAGTTTGTTGCGGCTTGGCACAAACTGATTAGAGATTATAATCTGGAAAAAAGTGTTAACTTGCGTCACATATGGGACATAAGGCGTAAATGGGCATTTGTATATTTTTCCCATAGGTTCTTTGCTGGGATGACTACTACACAGAGAAGTGAGTCTGCAAACCATGTGTTTAAGATGTTTGTGTCACCCTCTAGCTCTATGAATGGCTTTGTTAAGAGGTACGACCGGTTTTTCAATGAGAAGCTGCAAAAAGAGGACTCGGAGGAATTCCAAACCAGTAATGTAAGTATCCACTGTGATAGGTTTGTTGACCTCTTTTTATGGATATGTGTAATCAACATTTGGTGTCGCTTGGTGCAGGACAAGGTTGAAATTAAAACAAGGTCACCGATAGAGATTCACGCATCCCAAGTATATACTAGGGCTGTTTTCCAATTGTTCTCTGAGGAGTTAACCGATAGTCTATCTTACATGGTGAAACCTGGGGAGGACGAAAGCACCGTGCAAGTTGTACGGATGAACTCGCAAGAATCATTCCTTAGGAAGGAATATCAGGTGTCTTGTGATTTGGAAAGAGATGAATTTCATGCGTTTGCAAGATGTTTGAGCATAAGGGGATTCTGTGCAGCCACATCTTAAGGGTATTTGTTTCTTCTACTGTCTAAACATTTATTTTCATTGGGTCGTACTATATGTTCGGTACTGTTTGGCTTTTTGAAGTAATGCATTGGTTTGTCCCTTTAGGTACTTGTTCAGTATGGTTTGTCAAGAATTCCAGAGAGGTATATACTGAAAAGATGGACGAAGGATGCTCGGGATACTATACCACCTCATCTACATGGGTACAAAGATGATGTCAATGCTTCACAATCGAGGAGTTACAGACATGTAATGCTGAATAGGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGCAGACATTTAAGATGGCAATGACAGTCATGAATAAGCTTTTGGAGGACATGAAAAATCAGTTATCTTTGGATGATGGTGACAATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAACGAAGATGTTGGTGGAGGTGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCACCGTTGAAAAAGAGAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGAAAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAATCCGTTGAAAAAGAAAACCAAGTCATTGATCATGAGGATGAAGTGCCCTTTCCTCGTAGGTTTTGCCACACATGCCACGAAGCTGGTCATAATTCGCGGACTTGCGGCCGGACATCTACGTACAAGAGAAAACTTTAG

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CDS seq

ATGGATAAACAAGTGAAGAACCACAGACCTTCTGATGGTACGGATGGATCAAGGGAAATTCTTATGGACGAGCGCAACCCTACCATGGACATAGTAGATGGTATTAGTCAATCTGTCCATGATTCACAACCGGATGGTGGTCAGTCAAGCCGTGTAGCAATGGAGGAGGACGTGCCGTCGCGGGTTGGATCACATGATTCAGGGCATGGAATTCCAGAGACAAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTGGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGATCGCATGAATACTAAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGGGGAGGAACCCAAAAACCAAGAAGCCTTCCGTTCGAATTGGGTGCCCAGCAATGATGAAGATAAATATGTCTGGAGCTGGTAGTGGCTGGTCAGTAACAAAGGTTGTTTCTGCGCACAACCATCCTATGAAAAAAAGTGTAGGAGTTACTAAGAATTATCAGTCGCACAATCAAATAGATGAGGGGACTCGTGGTATTATTGAAGAGATGAGCACCTTCTTTGGTTGTGCCCTGCTTAGAGAAGAGACTGAAGAATCATTTACATGGTTATTCAATACATTCAAAGAGTGCATGAATGGGAAGGTTCCTATTGGAATATTAACAGACAATTGTCCTTCCATGGCAGCTGCCATTAGAACAGTATTTCCCAATACAATCCATCGTGTGTGCAAGTGGCATGTACTGAAGAAAGCAAAGGAATTTATGGGGAACATATACTCCAAGCGTCATACATTCAAGAAAGTATTTCATAAGGTTCTTACGCAGACACTAACAGAGGAGGAGTTTGTTGCGGCTTGGCACAAACTGATTAGAGATTATAATCTGGAAAAAAGTGTTAACTTGCGTCACATATGGGACATAAGGCGTAAATGGGCATTTGTATATTTTTCCCATAGGTTCTTTGCTGGGATGACTACTACACAGAGAAGTGAGTCTGCAAACCATGTGTTTAAGATGTTTGTGTCACCCTCTAGCTCTATGAATGGCTTTGTTAAGAGGTACGACCGGTTTTTCAATGAGAAGCTGCAAAAAGAGGACTCGGAGGAATTCCAAACCAGTAATGACAAGGTTGAAATTAAAACAAGGTCACCGATAGAGATTCACGCATCCCAAGTATATACTAGGGCTGTTTTCCAATTGTTCTCTGAGGAGTTAACCGATAGTCTATCTTACATGGTGAAACCTGGGGAGGACGAAAGCACCGTGCAAGTTGTACGGATGAACTCGCAAGAATCATTCCTTAGGAAGGAATATCAGGTACTTGTTCAGTATGGTTTGTCAAGAATTCCAGAGAGGTATATACTGAAAAGATGGACGAAGGATGCTCGGGATACTATACCACCTCATCTACATGGGTACAAAGATGATGTCAATGCTTCACAATCGAGGAGTTACAGACATGTAATGCTGAATAGGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGCAGACATTTAAGATGGCAATGACAGTCATGAATAAGCTTTTGGAGGACATGAAAAATCAGTTATCTTTGGATGATGGTGACAATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAACGAAGATGTTGGTGGAGGTGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCACCGTTGAAAAAGAGAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGAAAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAATCCGTTGAAAAAGAAAACCAAGTCATTGATCATGAGGATGAAGTGCCCTTTCCTCGTAGGTTTTGCCACACATGCCACGAAGCTGGTCATAATTCGCGGACTTGCGGCCGGACATCTACGTACAAGAGAAAACTTTAG

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Protein seq

MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKDRMNTKKQRTMRQICCSHQGRNPKTKKPSVRIGCPAMMKINMSGAGSGWSVTKVVSAHNHPMKKSVGVTKNYQSHNQIDEGTRGIIEEMSTFFGCALLREETEESFTWLFNTFKECMNGKVPIGILTDNCPSMAAAIRTVFPNTIHRVCKWHVLKKAKEFMGNIYSKRHTFKKVFHKVLTQTLTEEEFVAAWHKLIRDYNLEKSVNLRHIWDIRRKWAFVYFSHRFFAGMTTTQRSESANHVFKMFVSPSSSMNGFVKRYDRFFNEKLQKEDSEEFQTSNDKVEIKTRSPIEIHASQVYTRAVFQLFSEELTDSLSYMVKPGEDESTVQVVRMNSQESFLRKEYQVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVNASQSRSYRHVMLNRKTVEVAKIANKDVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGNLTADILPPLKKRSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEKENQVIDHEDEVPFPRRFCHTCHEAGHNSRTCGRTSTYKRKL

Function Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os04g54880 LOC_Os04g54880.1 Chr04 32643502 32647455 + MSU_osa1r7
CDS seq

ATGGATAAACAAGTGAAGAACCACAGACCTTCTGATGGTACGGATGGATCAAGGGAAATTCTTATGGACGAGCGCAACCCTACCATGGACATAGTAGATGGTATTAGTCAATCTGTCCATGATTCACAACCGGATGGTGGTCAGTCAAGCCGTGTAGCAATGGAGGAGGACGTGCCGTCGCGGGTTGGATCACATGATTCAGGGCATGGAATTCCAGAGACAAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTGGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGATCGCATGAATACTAAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGGGGAGGAACCCAAAAACCAAGAAGCCTTCCGTTCGAATTGGGTGCCCAGCAATGATGAAGATAAATATGTCTGGAGCTGGTAGTGGCTGGTCAGTAACAAAGGTTGTTTCTGCGCACAACCATCCTATGAAAAAAAGTGTAGGAGTTACTAAGAATTATCAGTCGCACAATCAAATAGATGAGGGGACTCGTGGTATTATTGAAGAGATGAGCACCTTCTTTGGTTGTGCCCTGCTTAGAGAAGAGACTGAAGAATCATTTACATGGTTATTCAATACATTCAAAGAGTGCATGAATGGGAAGGTTCCTATTGGAATATTAACAGACAATTGTCCTTCCATGGCAGCTGCCATTAGAACAGTATTTCCCAATACAATCCATCGTGTGTGCAAGTGGCATGTACTGAAGAAAGCAAAGGAATTTATGGGGAACATATACTCCAAGCGTCATACATTCAAGAAAGTATTTCATAAGGTTCTTACGCAGACACTAACAGAGGAGGAGTTTGTTGCGGCTTGGCACAAACTGATTAGAGATTATAATCTGGAAAAAAGTGTTAACTTGCGTCACATATGGGACATAAGGCGTAAATGGGCATTTGTATATTTTTCCCATAGGTTCTTTGCTGGGATGACTACTACACAGAGAAGTGAGTCTGCAAACCATGTGTTTAAGATGTTTGTGTCACCCTCTAGCTCTATGAATGGCTTTGTTAAGAGGTACGACCGGTTTTTCAATGAGAAGCTGCAAAAAGAGGACTCGGAGGAATTCCAAACCAGTAATGACAAGGTTGAAATTAAAACAAGGTCACCGATAGAGATTCACGCATCCCAAGTATATACTAGGGCTGTTTTCCAATTGTTCTCTGAGGAGTTAACCGATAGTCTATCTTACATGGTGAAACCTGGGGAGGACGAAAGCACCGTGCAAGTTGTACGGATGAACTCGCAAGAATCATTCCTTAGGAAGGAATATCAGGTACTTGTTCAGTATGGTTTGTCAAGAATTCCAGAGAGGTATATACTGAAAAGATGGACGAAGGATGCTCGGGATACTATACCACCTCATCTACATGGGTACAAAGATGATGTCAATGCTTCACAATCGAGGAGTTACAGACATGTAATGCTGAATAGGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGCAGACATTTAAGATGGCAATGACAGTCATGAATAAGCTTTTGGAGGACATGAAAAATCAGTTATCTTTGGATGATGGTGACAATAGTAGAGAAGCTCCGAAGCGAGCAGCTAGGCATAAATCAAGGTCTACTGTATTGACTGAAGATGGAAACGAAGATGTTGGTGGAGGTGATGAGGACAGTGAGTATGACGTGCCAAGTGAGGACGAGGGTGGAAATTTGACTGCTGATATACTTCCACCGTTGAAAAAGAGAAGCAGAGGAAGACCTAAGGTGAATAGGTATAAATCGGGTGGTGAGGTTGCCAGCCTGAAAAGAAGAAAAGAAGTAGGGATTGAGAAGAAGAACACAACCAATGAGTGTGAATCCGTTGAAAAAGAAAACCAAGTCATTGATCATGAGGATGAAGTGCCCTTTCCTCGTAGGTTTTGCCACACATGCCACGAAGCTGGTCATAATTCGCGGACTTGCGGCCGGACATCTACGTACAAGAGAAAACTTTAG

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Protein seq

MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKDRMNTKKQRTMRQICCSHQGRNPKTKKPSVRIGCPAMMKINMSGAGSGWSVTKVVSAHNHPMKKSVGVTKNYQSHNQIDEGTRGIIEEMSTFFGCALLREETEESFTWLFNTFKECMNGKVPIGILTDNCPSMAAAIRTVFPNTIHRVCKWHVLKKAKEFMGNIYSKRHTFKKVFHKVLTQTLTEEEFVAAWHKLIRDYNLEKSVNLRHIWDIRRKWAFVYFSHRFFAGMTTTQRSESANHVFKMFVSPSSSMNGFVKRYDRFFNEKLQKEDSEEFQTSNDKVEIKTRSPIEIHASQVYTRAVFQLFSEELTDSLSYMVKPGEDESTVQVVRMNSQESFLRKEYQVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVNASQSRSYRHVMLNRKTVEVAKIANKDVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGNLTADILPPLKKRSRGRPKVNRYKSGGEVASLKRRKEVGIEKKNTTNECESVEKENQVIDHEDEVPFPRRFCHTCHEAGHNSRTCGRTSTYKRKL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0354200 SBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g28580 SBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os04g0354200 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0009420 SBH 0.0 0.0 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0010180 SBH 0.0 0.0 0.000000
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0009970 SBH 0.0 0.0 1.327690
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0009640 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0009770 SBH 0.0 0.0 6.309835
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0414500 SBH 0 0 0.0179385
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0013790 SBH 0.111475 0.211330 0.163333
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0264700 SBH 0.0962495 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0009490 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0014170 SBH 0.000000 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0014140 SBH 0.000000 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0011640 SBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0009750 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G028570 SBH 0.0 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0014070 SBH 0.0 0.0 2.048071
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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