Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0014070 | OGI:04067450 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:21757262-21760252 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccacagtttcttctcgtcacaacttccaatttcccatcgccccgtcgccgactcgccgtctccttctccggctacggcggtcgccgccggcggtaccactcgtcaagttcatcctctccctctccctctctctcctctcgctctccgatcctctccaattctggattgctgctttcccccgtcgctgcccccgccagtcccgaatccacagatgccaggatgatgcccgcgggatcggcatcccttctcctcgagtgctacggcggcgaccctcctctttcctccatggaggggaccagcagcggcgaggaggtcgaggacgggacGggGTCCCTCGCCGGAGGCGGAGGAGGACGACGACCCGGCGCCGTACGTCGGGCAGAGGTTCCCGACGCACGACGCGGCGCACGAGCTCTACAGCGGGTTCGCGAGGCGGCGCGGGTTCTCGATCCGCCGCCACCGGACGGAGGGGAAGGACGGGGTGGGGAGGGGCCTGACGAGGAGGTACTTCGTGTGCCACCGCGCCGGGAACCCGCCGGCGAAGCCCTTCGCCGCCGGCGCCGGCGACAGGCCGCAGAGGAACCGGCGGTCCTCCCGCTGCGGGTGCAAGGCGTACATGCGCATCGGCAGGAGCGCCATCGCCGCCGCGGCCGCGGGGGAGGCGGAGGGGGAGTGGCGGGTCACGGGCTTCTCCAACCACCACAACCACGAGCTCCTGGGTCAGGACCAGGTCCGCCTCCTCCCGGCGTACCGCGTCGTCTCCGGGGACGACAGAGACCGGATCCTGATGCTCGCCAGGTCCGGGATCTCCGTGCAGCAGATGATGAGGATCATGGAGCTGGAGAGGCGCGTCGAGCCGGGCAATCTGCCCTTCACAGAGAAGGATGTGAGGAACCTCATCCAGTCGTGCAGGAAGTCTGATCAGGAGGAGAGCGTCGATCTGATCAAAATGTGCAGAAGATTTCAGGAGAAGGACCCCGATTTCAAGTATGAATTCACCAAAGGTGCGAGCAACCGCGTCGAGAACGTTGCCTGGTCGTTTGCATCGTCGGTTCAGTCTTACGAGATGTTTGGTGATGCTGTTGTATTCGACACGACTCATCGGTTGCCTGCTCTGGACATGCTGCTTGGGATTTGGGTTGGATTGAACAATCATGTGggatgccttgcttctttggttgcgctcttctaagggaggaaagtctgcaatcctatgcatgggcattaaaggtataaaacattcagggtgaaaattcttagcacaccttttaaccattctgttagcaagtactatgtatttcttttcTTtttttttttttgaaaaacaattagcaagtctttcttgttgacaggtatttctcaacttcatgaacagaaaggctccgctgacaatattgacggatgaaagtatgtatctcaaggaagcaattgaaaaggagcttccaggcacaaagcatgccctctgcatttggcttattgcagccaggtttccatcttggTttgatgcagttcttggtgaacggtacaatagctggagAaatgagttcgataggttgtataacatggaaagcacaatggagtttgatcttgggtggagtgacatgatgaacagctatggactacatggaaatgggcacattgctagtctgtttgcatcacgaactctctgggcattaccgtatttgagagggcagtttttagcaggactgcttgcttctccagaaacttcaaagtcaattagtgccttcattcagcgattctcgagtgctcagacacgcctagcccatttcattgagcaggtgagcttgtaaagattaacaaatgactttttgtgtgtgtgtgtgtgtgtttgactttgatcctagaattatgcctttttatttgcgattcccttcTTtttTTACTGCCACAACAAGCTCATCTTTTTACTGCCCCAAGGCAGCTTACTCATACATGCATGGTAGCATAGAAGCCCTTTTTTGTGCTTCCTCGTCATTACTTTGTGTAAATTAAAAGGCGTAATGCATTATACTATTCATGTTTTGCATAGGTAGCAGTCGTTGCCGAGTATAAAGACCAAGTTGGGGAGCAACAAATGATGCAACACAATCTGCAAAGCATAACCCTCAAGACTGCAACTCCAATGGAAAGGCATGCGGCTGCAGTTCTCACCCCGTATGCCTTCTCTAAGCTACAAGATGAGCTCGTTGTGGCTTCTCAATATGCATCATTTCACTTGGAAGGGAATGTCTTTCTGGTCCGTCATCATACCAAGACAGACGGTGGGTGCAATGTGACATGGAGCCAACGAGATGAGCTAATTTCTTGTAGCTGCAATATGTTTGAGTCTGCAGGGATCCTCTGCCGGCATGCCCTCCGTGTGCTCTCGACCCTCAACTACTTTCAGATCCCGGACCATTATCTCCCTCCTCGATGGCGTAGAACCTGGCCATCACCTTCCAAGGCCTTGAATGGTGCTTATTTCGACGAGTTACCTGAGATTGGGAGAGTGAAGGAATTACAGTCCATGGTGTCAGCTCTGGTGAGCGAAGCTTCCAAATCTACCGAGCGGATGGATATCGCGACGCAGGAGGTCTCTGCCCTGTTtgtcgcggatgaggcagcaacctgctgtcgtgcaagtttcaggtgatggtgttcacaagtaggggtagctaaaccgtgcactcctccatgagggagtgacgactgacagctttagacctgttaggctggtgtaatgccgatgctgttttccccttcatttttaggtacattttggtagattttttagggataaccatttctttagacgcaattctgcccagtttttcagggtgaccatttctcacccgcataccttttgctatgcacacatcttgCccatatatctagtaccctagtcattgcaattagagcttcatggtgtgctttcacgcaaaatggaagtgaatgtcaataattagcttatgtggttaaaccattcgtgcc
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| CDS seq | atgatgcccgcgggatcggcatcccttctcctcgagtgctacggcggcgaccctcctctttcctccatggaggggaccagcagcggcgaggaggtcgaggacgggacGggGTCCCTCGCCGGAGGCGGAGGAGGACGACGACCCGGCGCCAGGTTCCCGACGCACGACGCGGCGCACGAGCTCTACAGCGGGTTCGCGAGGCGGCGCGGGTTCTCGATCCGCCGCCACCGGACGGAGGGGAAGGACGGGGTGGGGAGGGGCCTGACGAGGAGGTACTTCGTGTGCCACCGCGCCGGGAACCCGCCGGCGAAGCCCTTCGCCGCCGGCGCCGGCGACAGGCCGCAGAGGAACCGGCGGTCCTCCCGCTGCGGGTGCAAGGCGTACATGCGCATCGGCAGGAGCGCCATCGCCGCCGCGGCCGCGGGGGAGGCGGAGGGGGAGTGGCGGGTCACGGGCTTCTCCAACCACCACAACCACGAGCTCCTGGGTCAGGACCAGGTCCGCCTCCTCCCGGCGTACCGCGTCGTCTCCGGGGACGACAGAGACCGGATCCTGATGCTCGCCAGGTCCGGGATCTCCGTGCAGCAGATGATGAGGATCATGGAGCTGGAGAGGCGCGTCGAGCCGGGCAATCTGCCCTTCACAGAGAAGGATGTGAGGAACCTCATCCAGTCGTGCAGGAAGTCTGATCAGGAGGAGAGCGTCGATCTGATCAAAATGTGCAGAAGATTTCAGGAGAAGGACCCCGATTTCAAGTATGAATTCACCAAAGGTGCGAGCAACCGCGTCGAGAACGTTGCCTGGTCGTTTGCATCGTCGGTTCAGTCTTACGAGATGTTTGGTGATGCTGTTGTATTCGACACGACTCATCGGTTGCCTGCTCTGGACATGCTGCTTGGGATTTGGGTTGGATTGAACAATCATgtatttctcaacttcatgaacagaaaggctccgctgacaatattgacggatgaaagtatgtatctcaaggaagcaattgaaaaggagcttccaggcacaaagcatgccctctgcatttggcttattgcagccaggtttccatcttggTttgatgcagttcttggtgaacggtacaatagctggagAaatgagttcgataggttgtataacatggaaagcacaatggagtttgatcttgggtggagtgacatgatgaacagctatggactacatggaaatgggcacattgctagtctgtttgcatcacgaactctctgggcattaccgtatttgagagggcagtttttagcaggactgcttgcttctccagaaacttcaaagtcaattagtgccttcattcagcgattctcgagtgctcagacacgcctagcccatttcattgagcagGTAGCAGTCGTTGCCGAGTATAAAGACCAAGTTGGGGAGCAACAAATGATGCAACACAATCTGCAAAGCATAACCCTCAAGACTGCAACTCCAATGGAAAGGCATGCGGCTGCAGTTCTCACCCCGTATGCCTTCTCTAAGCTACAAGATGAGCTCGTTGTGGCTTCTCAATATGCATCATTTCACTTGGAAGGGAATGTCTTTCTGGTCCGTCATCATACCAAGACAGACGGTGGGTGCAATGTGACATGGAGCCAACGAGATGAGCTAATTTCTTGTAGCTGCAATATGTTTGAGTCTGCAGGGATCCTCTGCCGGCATGCCCTCCGTGTGCTCTCGACCCTCAACTACTTTCAGATCCCGGACCATTATCTCCCTCCTCGATGGCGTAGAACCTGGCCATCACCTTCCAAGGCCTTGAATGGTGCTTATTTCGACGAGTTACCTGAGATTGGGAGAGTGAAGGAATTACAGTCCATGGTGTCAGCTCTGGTGAGCGAAGCTTCCAAATCTACCGAGCGGATGGATATCGCGACGCAGGAGGTCTCTGCCCTGTTtgtcgcggatgaggcagcaacctgctgtcgtgcaagtttcaggtga
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| Protein seq | MMPAGSASLLLECYGGDPPLSSMEGTSSGEEVEDGTGSLAGGGGGRRPGARFPTHDAAHELYSGFARRRGFSIRRHRTEGKDGVGRGLTRRYFVCHRAGNPPAKPFAAGAGDRPQRNRRSSRCGCKAYMRIGRSAIAAAAAGEAEGEWRVTGFSNHHNHELLGQDQVRLLPAYRVVSGDDRDRILMLARSGISVQQMMRIMELERRVEPGNLPFTEKDVRNLIQSCRKSDQEESVDLIKMCRRFQEKDPDFKYEFTKGASNRVENVAWSFASSVQSYEMFGDAVVFDTTHRLPALDMLLGIWVGLNNHVFLNFMNRKAPLTILTDESMYLKEAIEKELPGTKHALCIWLIAARFPSWFDAVLGERYNSWRNEFDRLYNMESTMEFDLGWSDMMNSYGLHGNGHIASLFASRTLWALPYLRGQFLAGLLASPETSKSISAFIQRFSSAQTRLAHFIEQVAVVAEYKDQVGEQQMMQHNLQSITLKTATPMERHAAAVLTPYAFSKLQDELVVASQYASFHLEGNVFLVRHHTKTDGGCNVTWSQRDELISCSCNMFESAGILCRHALRVLSTLNYFQIPDHYLPPRWRRTWPSPSKALNGAYFDELPEIGRVKELQSMVSALVSEASKSTERMDIATQEVSALFVADEAATCCRASFR |
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| Function | Protein FAR1-RELATED SEQUENCE 11 [UniProtKB/Swiss-Prot:Q9SY66] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0014070 | OsNaBo_04g0014070.01 | Chr04 | 21757481 | 21760087 | + | NAM | ||
| CDS seq | atgatgcccgcgggatcggcatcccttctcctcgagtgctacggcggcgaccctcctctttcctccatggaggggaccagcagcggcgaggaggtcgaggacgggacGggGTCCCTCGCCGGAGGCGGAGGAGGACGACGACCCGGCGCCAGGTTCCCGACGCACGACGCGGCGCACGAGCTCTACAGCGGGTTCGCGAGGCGGCGCGGGTTCTCGATCCGCCGCCACCGGACGGAGGGGAAGGACGGGGTGGGGAGGGGCCTGACGAGGAGGTACTTCGTGTGCCACCGCGCCGGGAACCCGCCGGCGAAGCCCTTCGCCGCCGGCGCCGGCGACAGGCCGCAGAGGAACCGGCGGTCCTCCCGCTGCGGGTGCAAGGCGTACATGCGCATCGGCAGGAGCGCCATCGCCGCCGCGGCCGCGGGGGAGGCGGAGGGGGAGTGGCGGGTCACGGGCTTCTCCAACCACCACAACCACGAGCTCCTGGGTCAGGACCAGGTCCGCCTCCTCCCGGCGTACCGCGTCGTCTCCGGGGACGACAGAGACCGGATCCTGATGCTCGCCAGGTCCGGGATCTCCGTGCAGCAGATGATGAGGATCATGGAGCTGGAGAGGCGCGTCGAGCCGGGCAATCTGCCCTTCACAGAGAAGGATGTGAGGAACCTCATCCAGTCGTGCAGGAAGTCTGATCAGGAGGAGAGCGTCGATCTGATCAAAATGTGCAGAAGATTTCAGGAGAAGGACCCCGATTTCAAGTATGAATTCACCAAAGGTGCGAGCAACCGCGTCGAGAACGTTGCCTGGTCGTTTGCATCGTCGGTTCAGTCTTACGAGATGTTTGGTGATGCTGTTGTATTCGACACGACTCATCGGTTGCCTGCTCTGGACATGCTGCTTGGGATTTGGGTTGGATTGAACAATCATgtatttctcaacttcatgaacagaaaggctccgctgacaatattgacggatgaaagtatgtatctcaaggaagcaattgaaaaggagcttccaggcacaaagcatgccctctgcatttggcttattgcagccaggtttccatcttggTttgatgcagttcttggtgaacggtacaatagctggagAaatgagttcgataggttgtataacatggaaagcacaatggagtttgatcttgggtggagtgacatgatgaacagctatggactacatggaaatgggcacattgctagtctgtttgcatcacgaactctctgggcattaccgtatttgagagggcagtttttagcaggactgcttgcttctccagaaacttcaaagtcaattagtgccttcattcagcgattctcgagtgctcagacacgcctagcccatttcattgagcagGTAGCAGTCGTTGCCGAGTATAAAGACCAAGTTGGGGAGCAACAAATGATGCAACACAATCTGCAAAGCATAACCCTCAAGACTGCAACTCCAATGGAAAGGCATGCGGCTGCAGTTCTCACCCCGTATGCCTTCTCTAAGCTACAAGATGAGCTCGTTGTGGCTTCTCAATATGCATCATTTCACTTGGAAGGGAATGTCTTTCTGGTCCGTCATCATACCAAGACAGACGGTGGGTGCAATGTGACATGGAGCCAACGAGATGAGCTAATTTCTTGTAGCTGCAATATGTTTGAGTCTGCAGGGATCCTCTGCCGGCATGCCCTCCGTGTGCTCTCGACCCTCAACTACTTTCAGATCCCGGACCATTATCTCCCTCCTCGATGGCGTAGAACCTGGCCATCACCTTCCAAGGCCTTGAATGGTGCTTATTTCGACGAGTTACCTGAGATTGGGAGAGTGAAGGAATTACAGTCCATGGTGTCAGCTCTGGTGAGCGAAGCTTCCAAATCTACCGAGCGGATGGATATCGCGACGCAGGAGGTCTCTGCCCTGTTtgtcgcggatgaggcagcaacctgctgtcgtgcaagtttcaggtga
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| Protein seq | MMPAGSASLLLECYGGDPPLSSMEGTSSGEEVEDGTGSLAGGGGGRRPGARFPTHDAAHELYSGFARRRGFSIRRHRTEGKDGVGRGLTRRYFVCHRAGNPPAKPFAAGAGDRPQRNRRSSRCGCKAYMRIGRSAIAAAAAGEAEGEWRVTGFSNHHNHELLGQDQVRLLPAYRVVSGDDRDRILMLARSGISVQQMMRIMELERRVEPGNLPFTEKDVRNLIQSCRKSDQEESVDLIKMCRRFQEKDPDFKYEFTKGASNRVENVAWSFASSVQSYEMFGDAVVFDTTHRLPALDMLLGIWVGLNNHVFLNFMNRKAPLTILTDESMYLKEAIEKELPGTKHALCIWLIAARFPSWFDAVLGERYNSWRNEFDRLYNMESTMEFDLGWSDMMNSYGLHGNGHIASLFASRTLWALPYLRGQFLAGLLASPETSKSISAFIQRFSSAQTRLAHFIEQVAVVAEYKDQVGEQQMMQHNLQSITLKTATPMERHAAAVLTPYAFSKLQDELVVASQYASFHLEGNVFLVRHHTKTDGGCNVTWSQRDELISCSCNMFESAGILCRHALRVLSTLNYFQIPDHYLPPRWRRTWPSPSKALNGAYFDELPEIGRVKELQSMVSALVSEASKSTERMDIATQEVSALFVADEAATCCRASFR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0014070 | OsNaBo_04g0014070.02 | Chr04 | 21757262 | 21760252 | + | IsoSeq | ||
| CDS seq | atgccttgcttctttggttgcgctcttctaagggaggaaagtctgcaatcctatgcatgggcattaaaggtatttctcaacttcatgaacagaaaggctccgctgacaatattgacggatgaaagtatgtatctcaaggaagcaattgaaaaggagcttccaggcacaaagcatgccctctgcatttggcttattgcagccaggtttccatcttggTttgatgcagttcttggtgaacggtacaatagctggagAaatgagttcgataggttgtataacatggaaagcacaatggagtttgatcttgggtggagtgacatgatgaacagctatggactacatggaaatgggcacattgctagtctgtttgcatcacgaactctctgggcattaccgtatttgagagggcagtttttagcaggactgcttgcttctccagaaacttcaaagtcaattagtgccttcattcagcgattctcgagtgctcagacacgcctagcccatttcattgagcagGTAGCAGTCGTTGCCGAGTATAAAGACCAAGTTGGGGAGCAACAAATGATGCAACACAATCTGCAAAGCATAACCCTCAAGACTGCAACTCCAATGGAAAGGCATGCGGCTGCAGTTCTCACCCCGTATGCCTTCTCTAAGCTACAAGATGAGCTCGTTGTGGCTTCTCAATATGCATCATTTCACTTGGAAGGGAATGTCTTTCTGGTCCGTCATCATACCAAGACAGACGGTGGGTGCAATGTGACATGGAGCCAACGAGATGAGCTAATTTCTTGTAGCTGCAATATGTTTGAGTCTGCAGGGATCCTCTGCCGGCATGCCCTCCGTGTGCTCTCGACCCTCAACTACTTTCAGATCCCGGACCATTATCTCCCTCCTCGATGGCGTAGAACCTGGCCATCACCTTCCAAGGCCTTGAATGGTGCTTATTTCGACGAGTTACCTGAGATTGGGAGAGTGAAGGAATTACAGTCCATGGTGTCAGCTCTGGTGAGCGAAGCTTCCAAATCTACCGAGCGGATGGATATCGCGACGCAGGAGGTCTCTGCCCTGTTtgtcgcggatgaggcagcaacctgctgtcgtgcaagtttc
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| Protein seq | MPCFFGCALLREESLQSYAWALKVFLNFMNRKAPLTILTDESMYLKEAIEKELPGTKHALCIWLIAARFPSWFDAVLGERYNSWRNEFDRLYNMESTMEFDLGWSDMMNSYGLHGNGHIASLFASRTLWALPYLRGQFLAGLLASPETSKSISAFIQRFSSAQTRLAHFIEQVAVVAEYKDQVGEQQMMQHNLQSITLKTATPMERHAAAVLTPYAFSKLQDELVVASQYASFHLEGNVFLVRHHTKTDGGCNVTWSQRDELISCSCNMFESAGILCRHALRVLSTLNYFQIPDHYLPPRWRRTWPSPSKALNGAYFDELPEIGRVKELQSMVSALVSEASKSTERMDIATQEVSALFVADEAATCCRASF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr04 | 21758417 | 21758614 | + | OsNaBo_04g0014070.02 | OsNaBo_04g0014070.01,OsNaBo_04g0014070.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.048071 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0443000 | RBH | 0.700077 | 0.512136 | 1.155354 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g36590 | RBH | 0.547936 | 0.315327 | 0.289741 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0443000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014470 | RBH | 0.000000 | 0.0 | 0.243832 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015320 | RBH | 0.049391 | 0.000000 | 0.703301 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015040 | RBH | 0.0 | 0.0 | 0.509307 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014630 | RBH | 0.054835 | 0.022603 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014960 | RBH | 0.402474 | 0.000000 | 5.762455 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0343600 | RBH | 0.9267115 | 3.4564265 | 3.211076 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013790 | RBH | 0.111475 | 0.211330 | 0.163333 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0339800 | RBH | 1.862026 | 4.7070445 | 5.3784225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014420 | RBH | 0.063702 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014170 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014140 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014770 | RBH | 0.0 | 0.0 | 0.265831 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014980 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014040 | RBH | 0.060278 | 0.000000 | 0.561013 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020650 | RBH | 1.029762 | 6.914960 | 7.026254 |
