Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g42320 | OGI:04076120 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:25038921-25045802 | ||||||||
| Gene Symbol | BIP106 | ||||||||||
| DNA seq | GATGATATGAACTACGACATTTCTCTCCATTCATGCTTGCTGCAAAATTGACGTCTCAAATAGCTCCAGCAGAAAATACAATCTAATAAGGGTTGAACGACAGCAAGCAAGAAACCATATTTGCTAGAGGCTCACAGCTGACCACAAGGAACAAAAGTAACACCTACATTACAACTACCACTGCAACTGCTACAACTACCAGCTGTTTCGTGACGGTCGATTAGGGCAAGACTTGGCAGGCAACCAGCCAAGGGATGGAAGCCATATAAATTGCTAGGCTGCTCATGCCAAAAACCTTCAGACTGCATGCCTCATAAGTACCCCTTGGAAGAACTGCACAAGGCCAGAGCAAATTAGTTATGAGCCTTCCTTCTGCGCTTCTTTCCAGTAGAAATTTTAGCAGACACATGCTCTTCCTCTTCAGATGACTCGCCTTCTTTCTCCTTTTGCTTTCTTTTGGTCGAAAGACCATTTGTCTTGGATCCATCAGCAGCTTTGGGAGTGCTTGCACCTTTTGGATTTGATCCGCTGGATTTAGCTTCATCTTTTGAATCCTTGTGTTTGCTGCCACCATCATTTTTTGATTTGCTTGCGCTTTTAGTGTTACCAGTCTCATCCTTGTTGCTTCCCTTTAGCAGGCCATCCTTTGTCTTGCCAGTGGATCGAGATGATCTTCCACCTTCATTCTTGAGGGCACTGCCACTTTTAGGTGTCTTGGATATATCTTCATCATCGTTTTCTGCACTTTTCCCCTTCAAAGGACTGTCATCATTTTGTGAACTATTGCTGGAGCGCACACCTTTAGGGCGTCCTCTTTTCTTGGGAGGATCAGCGACATCAGTGCCACGATGTTTCCCACTGCATACAAAACAAGACAACAGTTTCAGTTAAGGTGTTGCATGTAGGCTGGATCAATATGGCACATCCATATGAAAAGAACCTGCTGGGTGTTTCTATTTTTCCTTCCTTTGTTTGCTCACCCAAGCTAACTCTACCCCTTCTGCCGTGCGGCCTGGTAAAAATGATCAAAGAACTCAAATATATAAAAAGAAAGAAAACAAAACCATATTATAAAGGATAATAGCTGATGATGAACGAAACTGGAGCATTAGGTAACATCTGCCAGCAGTATGCATGTCGCAGCAAAATGAACAAATAAATTATGTGATTACAGTTGGAACTCCTGATCATAAATAGTAAAGTTACAATACAAACAGAAACACAGTAAATCTTATAATCTATATGGTAGAAACATAAACTGAAGATAATGGATGCTGGGAATAATCCAATCAACCACAACTCAAAGCTCAGAAAATCAAGGTCATTCATGCTAGAGCAACTTATTTTGTCTCCGTTAACCCATTCAAGAAGCATTCCAAGCATCTTGAACCCCCATATCAAAGATTCAAGATAAGGAGATTGCAGGTTTATAGGAATGACAATCCGAATCATATAAAAGATTTTAGTGCTGATGTAACTAAGAAAGTCATCAAAACTTTAAGAGGATATCGATGATGCAAAGTAGAATATTTATTTACATACATATCAGACGATGCGTCAGGATTGTTGTCTCGCCCCTGCAGGTAGCAGATGAATCAGAAAGTGGCTAGAAAGGATAGATAATGGCGTCAAACTGCATGGACATACCTCATCAATGAATTCCCATTTTTCATTCTTAAGGTGTAGGCGTTCAACATCTCCATCATCATAAACAACCTGGGTGCCAAAAAAATGAAGGTATCCAAAGATGAAACTGAGCTCAAAAAAAAAACTAGCATTTGTAGTGATTTGGACAGCAAAAAGGCATAAGTCAGAGCTCATTTCCCAATGCACACCTTGTGCTTTTTTGAAGCAACATCAAATGACTCAACAACACCTTTATAGAACCTGCAGAGCAAGAAACAGATTCAGAACAAGCCAAACAACACACCAGTAAAACTCATGTAAGAAATCACATATCGTAGCAAAAAAGAGTGAGGAGACCAGGATAGATAAAATATAGGTGTGTAACTCAATCTAGAATGAATAATTGTACTGCATATATTATTAAAGAAAAGGTACATATTTAGAAACATCATATCAAAGTAACGAATAATGCAACTGAAGCGTCGTCTGCAAAAGAATATGCCATGTCAATCTAGATCAAGAAATTTATTTAGAAAATAATGTTCATACATATGAAAATATCATCATAACCAATGAAGCAATGGGTACTAGTTAGCCTACAAACACAATCTTAACAAACTCCTACATTTGAGAAACATAAATGATGGTTATAGAACTTACTTTCTGTCATCAGGCCACCACACTTTGATTCTTGAGCCAACAAGATTTCCTTTAAGAATTTTGTTCTTCTTGGGCTGGGGAGTCTGATGAAAGCAAAGAAAAAGATTTGAACAACTGAAACAGAAATCAGCTTGCAACAAGACTATTCACTAACAGCAATAAGAATCAAGTATGCATATACCTCTTCAGCTTCCTGTGCACGTTTCCTTTTTGAGCCCCCACTGTCACCTGCCTGGCCTTTGTTTTTACCTGTTTTGGCCGAAGACTTGGGAGATACGATATCCTGCGTTATGATAAAACAGTCATTGTGGTCGATCATCATCATCGCATGCACAAACATTTCAACACAAACCCATCAGATTTACACCAAATGCAAATAAAGCTCTATGAATTTCGCCGTAGATACAAAATAGTTGGTGGCAGGTTGCCAAGCCAATCAGGAAGTTAAAAGGATGAAAGGCAGAGAAGTTTAAAAATATGAGAGCCATCGACCCAACATGTTATAGTTTTGGAAAGCATAAAATGTTTTGAGGTTCCACTATTTCTAAATAACACTCCTACCAGGAAACCTTAGAACATGGAGTCAGACAGATATAAAACTATGAATATGTAAAACAGAAATCCAACCTTCTGCTAGTGATATACTTATGCACGACCTATGTGCAAAGCAAAACCTCAAATCATCTACTGTTGACAAAGAAACTACCTTTAAACTGAGATCCTCATCAGTGTCTTCATCGGGTGGAGTATCTTCCTGCTGTTTCAAATTTTCCTTCTGCTTCTTCTTCGAAGATTCCCCTTCACCAGTCTTTTTGAATGAAGACTTGATATCATCATCTTTAGCTAGTCGCCTTGTAGCCCTTCCACCAGAATCACTAACTGCGTCAGCTTTTTTAGACTCTAAACCTGATACTTTGCCTTTTCCAACATTCTTCTTCTCATGCGACTTTGATGCAGGAGGCCGGCCCCGCTTTCCCTTGCCAGCAGGTGTGTTATCAACATGTTTCGATTTGTCATCAGCAGCTCTATTCCCAGTCTCTGGTGGCAGCTTATTATCCCCATCATCAGTCTCTGGGGATAACTCCCTAGAGACTAAAATATCCTCGTTGTTGTTAACAGCCTTAGAATGATCAACCACTTCAGAATCAGTGGAAGTATCAAGTTTATGGCTTTTCTTTAAATTGTGATCAGATGGCTTTTCAGGCTCTGTGGTGATTGGTTCTGGTATTTCTTTAGCACCGGATATCAAATCATCAGTGTCTTTTGCCTGATTGTCATCAGAAGGCAGTTCAGCCTTCTTATCAGAAGAGGATGGTCCACTTGGAGACTTGACCCTGTCTATTAAAGCACAACCATTGCTAACCGCCGAAGTGGAAGTATTGTTTGGAGGAGTACCGTCTTTTCCAGGGCAATTGGCATCTTGCTCTAATTTTGATGATTCCTAAGGAATAAAATATGTTCATTGTGATATCTATCTCACTTTCAAGAACTTCAGATTGAATGTCAGTAGCGACATACCTGAGCTGACTCATCTGAAACAATCTTATGAGATAATTTCCCATCAGCCACCTGCATCACAAGCTTTCATAGTCAGCTTGGCTGAAATAAACTAATTAGTATATCAGAAGAACATTGGCCGGTATGATATCATATCAGATTGAGAGAATTTACACTACAAACTTTTACAGATCACACAGTTGATAACACCAGGTCATGGACCATTCTATTGACTCTACCAGAAACCAAAAAATATACTAACATACAATCAAGCATATCTTTGAATAACACCAAAAAAACAAAATTAATCCCAAGACCACTGCTTGATATTTCACAGTTGATACTTTTTCAGTCAATATAACTTTCAACCGCTAAGACAGCATTCCAGGGTCCAAATTCTAGTTATTACCTGATGGGCAACGTGACATTTTAAATTTAACATACATATTACTCCAGAAAGAATGCCATAGAATTGCCTGTCAAAATAGTTTATATACAGCATGATATTTAAATTAAAATACAGTTGATCATACAAAGAAATGCCTGTCAAAACATTTCTATGTCTCGTGTTCCTCTCCCAAGTCCCAGTGGTGGCTATATAGCATAAACCATATTATACCTCTATAGAGTGACAGATCTAACCATTTCCAGTAGCAAATAGTTGAACTCAATGTGTAAGACTAAAAATATGTGTTAAAGGTTGACCACCTCTAATAAAAAGAACATGAGCAGTCTTTGCCCATTTGAACACATCTGAAAATACATTGAGAATGCCACAAAATGCACTAACTCTATGGTGAGCAAACCTTAATTAATATTCAAAAAGGAAATTTGTTAGTAGTTTGACTGACCATATCCTTTCCAGGGGCATCAGAATTGTCGGCTACTCCAGCATCTAAAGCATCTTCGAACAATGATGTAACAACTTCGCTGTACTCATCCAAGGGAGTGCCCCGAAGTAAAGGAGTAAACACTGGCTTTAACTTCTCATAACACTTATTAATTACCTTCTCTGCAAGTTCGAAAGATGCTGGAAGAGTTTCCTACAGAGCAAATTTGAAATTTTAGTGAAGATGATCAGATCTATTAATTTTAATATGAAAGATGTAAGTGAATTCGAATTACTTTTTCTTCCTTTTTAAGGTTCTTCAGAAGGTAAGATGCTAGATCTTGAAGCAGGCAGGATGGCATATCTTGCTGGACATCTTCGCTCTCATCAATTACAAACTTCATCACAGTTTCCATCGAGGTGATGACATTCTCTTGATGAGTATTGCTGAAATAAATATAACAAAGTAATGAATTATAGGATAAAGAAGACTTAAGAAAATTAACAGAACATACGCAGGGCAGAACCATGAACATAGACATAAAGCAAATATACACAGGAAAACACATAGGAACTATTGTGACTTTATGAGTTTTCACGTCAAAGCAAATTGTGAACTGTGTAAACTTGTTGGAACAAATCATCATGCATGCTTTTGCACATTATTATGTGATAAGAGAAAAGCAGAAATTAGCAGGTTCTAGACAAACAGACAGAGGACAACAAAGGATTAAAATTACTTCATGGCAGATTGTGCCATTATATTTTACGCAGGGAACAACCGCTTGTCGGTTTTAAAATAAATGATGAACATAAGCTAACAATGAAAAACTGGGGAATGGGATATGGCAACTCCTCGGTATGTAAAATTTAGCATCGATATGCATGTAAAAAATGTTATTCCCCAAAGATTTGCAATCAGAACTGATAGCTGCGGTCAATTTGGTGCTTCAAGTAAAAAATCAAACGCAACAACGCCCAATGATATCGACAAACCATAGTAATACTAATACATGATGTTTCCCTTAAAGTAATCTTAACTGGTGAGTGTAATTGCAAATGCAGTTCTAACTTCTTCTCCATGTACATAATCATGCCAAATTAGCAGCATAATATTAATCAGGCATCTTGCAAGTCAATACCAGAACCACAACATATCCCTAGTCAATTTAAGAACCCGAAAGAATCGGCATTCTCAAGGTGAAGAAAATACGAAATGAACCAGCAAAAGAAGTTACACACGATATGGTTCTGAAGAAGTGGTGAAACATGTCCCGTATCAGATCGTCGCAGTCAAGATCTAGCATCAAGACACAGCTCCGGACCTTCGCAACGGTTTCAAGCATCGCAACCCTCCTTGCATAGGAGGGGCTTTCCATATCATCCAACTTCTCAAAGGCCTCAACAACTCTGGTAAATACATCCTGCAACAAAGCAAGTGACAATGGTCAGTGTGAGCAGGCACAACAATTCCGTAGCGATAAATCTTGCAGCAGAGCCAGTGACAAGGGTCACTACAAGCAAGCACAACAATTCCATGACGACAAGAAGACATTTACCTTCATGACATCATCGTCATAGGGGGCCTCCGGGGCAGTGATCCTGGTAACCTCCGTTAAACAGGAGGCAACAGCAAGCTTTATGTCAGGGACACTGTGATCCAGTAACTCCTTCTTAATCAGAGCACTCATTGTTGGCCGGAGAGCCTTGTGCATGCTCTCCGGCGGCGACTGGTCAACCCTGGCCAACCAGGTTTCTGCCTCCTGCATAAACGAATGAGCAGTTCTAAGTTTCTACCCAATTAATAAATAAATAAAACATTCTATTTATACAGATCCAAACAGCGAGGATTAAACTTCACATCAATATAACAACCAGTACATCCTATCATGCCAGGCTCCAATCTCCACGGCAACCTAGAAACGAACAACGCGAGAGAAAATAATAAGAAGAAAAAAAAAAGCAGGGTCAGGGGCGCTCACCTCGATTAATCTGAGCAGCTCGTCGTCGGCGTCCGGGAGCGAGGTGAAGCGGGCGCCGATGTCGCGAAGCCGCCGCTCCACCTCCATCTGCGCGCCGTCCGACGCCATCACGGCGGGGCGCGCGCGGTGCCGCCCCAGCGGGAGAGCCCGCGCGAAGATCTACCCCGAGGAGGAGGAGGAGGAGGAGGGGGAGACAGTTAGGGTTTCGCGAGGGGACTGGAGGGGGAGGGGGAGGGGGAGGAGAGGGCGAGAGCAGCGGTAGTGGGGGGTGGGAGATGCGATAGAGAT
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| CDS seq | ATGGCGTCGGACGGCGCGCAGATGGAGGTGGAGCGGCGGCTTCGCGACATCGGCGCCCGCTTCACCTCGCTCCCGGACGCCGACGACGAGCTGCTCAGATTAATCGAGGAGGCAGAAACCTGGTTGGCCAGGGTTGACCAGTCGCCGCCGGAGAGCATGCACAAGGCTCTCCGGCCAACAATGAGTGCTCTGATTAAGAAGGAGTTACTGGATCACAGTGTCCCTGACATAAAGCTTGCTGTTGCCTCCTGTTTAACGGAGGTTACCAGGATCACTGCCCCGGAGGCCCCCTATGACGATGATGTCATGAAGGATGTATTTACCAGAGTTGTTGAGGCCTTTGAGAAGTTGGATGATATGGAAAGCCCCTCCTATGCAAGGAGGGTTGCGATGCTTGAAACCGTTGCGAAGGTCCGGAGCTGTGTCTTGATGCTAGATCTTGACTGCGACGATCTGATACGGGACATGTTTCACCACTTCTTCAGAACCATATCCAATACTCATCAAGAGAATGTCATCACCTCGATGGAAACTGTGATGAAGTTTGTAATTGATGAGAGCGAAGATGTCCAGCAAGATATGCCATCCTGCCTGCTTCAAGATCTAGCATCTTACCTTCTGAAGAACCTTAAAAAGGAAGAAAAAGAAACTCTTCCAGCATCTTTCGAACTTGCAGAGAAGGTAATTAATAAGTGTTATGAGAAGTTAAAGCCAGTGTTTACTCCTTTACTTCGGGGCACTCCCTTGGATGAGTACAGCGAAGTTGTTACATCATTGTTCGAAGATGCTTTAGATGCTGGAGTAGCCGACAATTCTGATGCCCCTGGAAAGGATATGGTGGCTGATGGGAAATTATCTCATAAGATTGTTTCAGATGAGTCAGCTCAGGAATCATCAAAATTAGAGCAAGATGCCAATTGCCCTGGAAAAGACGGTACTCCTCCAAACAATACTTCCACTTCGGCGGTTAGCAATGGTTGTGCTTTAATAGACAGGGTCAAGTCTCCAAGTGGACCATCCTCTTCTGATAAGAAGGCTGAACTGCCTTCTGATGACAATCAGGCAAAAGACACTGATGATTTGATATCCGGTGCTAAAGAAATACCAGAACCAATCACCACAGAGCCTGAAAAGCCATCTGATCACAATTTAAAGAAAAGCCATAAACTTGATACTTCCACTGATTCTGAAGTGGTTGATCATTCTAAGGCTGTTAACAACAACGAGGATATTTTAGTCTCTAGGGAGTTATCCCCAGAGACTGATGATGGGGATAATAAGCTGCCACCAGAGACTGGGAATAGAGCTGCTGATGACAAATCGAAACATGTTGATAACACACCTGCTGGCAAGGGAAAGCGGGGCCGGCCTCCTGCATCAAAGTCGCATGAGAAGAAGAATGTTGGAAAAGGCAAAGTATCAGGTTTAGAGTCTAAAAAAGCTGACGCAGTTAGTGATTCTGGTGGAAGGGCTACAAGGCGACTAGCTAAAGATGATGATATCAAGTCTTCATTCAAAAAGACTGGTGAAGGGGAATCTTCGAAGAAGAAGCAGAAGGAAAATTTGAAACAGCAGGAAGATACTCCACCCGATGAAGACACTGATGAGGATCTCAGTTTAAAGGATATCGTATCTCCCAAGTCTTCGGCCAAAACAGGTAAAAACAAAGGCCAGGCAGGTGACAGTGGGGGCTCAAAAAGGAAACGTGCACAGGAAGCTGAAGAGACTCCCCAGCCCAAGAAGAACAAAATTCTTAAAGGAAATCTTGTTGGCTCAAGAATCAAAGTGTGGTGGCCTGATGACAGAAAGTTCTATAAAGGTGTTGTTGAGTCATTTGATGTTGCTTCAAAAAAGCACAAGGTTGTTTATGATGATGGAGATGTTGAACGCCTACACCTTAAGAATGAAAAATGGGAATTCATTGATGAGGGGCGAGACAACAATCCTGACGCATCGTCTGATATGCCGCACGGCAGAAGGGGTAGAGTTAGCTTGGGTGAGCAAACAAAGGAAGGAAAAATAGAAACACCCAGCAGTGGGAAACATCGTGGCACTGATGTCGCTGATCCTCCCAAGAAAAGAGGACGCCCTAAAGGTGTGCGCTCCAGCAATAGTTCACAAAATGATGACAGTCCTTTGAAGGGGAAAAGTGCAGAAAACGATGATGAAGATATATCCAAGACACCTAAAAGTGGCAGTGCCCTCAAGAATGAAGGTGGAAGATCATCTCGATCCACTGGCAAGACAAAGGATGGCCTGCTAAAGGGAAGCAACAAGGATGAGACTGGTAACACTAAAAGCGCAAGCAAATCAAAAAATGATGGTGGCAGCAAACACAAGGATTCAAAAGATGAAGCTAAATCCAGCGGATCAAATCCAAAAGGTGCAAGCACTCCCAAAGCTGCTGATGGATCCAAGACAAATGGTCTTTCGACCAAAAGAAAGCAAAAGGAGAAAGAAGGCGAGTCATCTGAAGAGGAAGAGCATGTGTCTGCTAAAATTTCTACTGGAAAGAAGCGCAGAAGGAAGGCTCATAACTAA
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| Protein seq | MASDGAQMEVERRLRDIGARFTSLPDADDELLRLIEEAETWLARVDQSPPESMHKALRPTMSALIKKELLDHSVPDIKLAVASCLTEVTRITAPEAPYDDDVMKDVFTRVVEAFEKLDDMESPSYARRVAMLETVAKVRSCVLMLDLDCDDLIRDMFHHFFRTISNTHQENVITSMETVMKFVIDESEDVQQDMPSCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPLDEYSEVVTSLFEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGTPPNNTSTSAVSNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPEKPSDHNLKKSHKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKSKHVDNTPAGKGKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSFKKTGEGESSKKKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKRAQEAEETPQPKKNKILKGNLVGSRIKVWWPDDRKFYKGVVESFDVASKKHKVVYDDGDVERLHLKNEKWEFIDEGRDNNPDASSDMPHGRRGRVSLGEQTKEGKIETPSSGKHRGTDVADPPKKRGRPKGVRSSNSSQNDDSPLKGKSAENDDEDISKTPKSGSALKNEGGRSSRSTGKTKDGLLKGSNKDETGNTKSASKSKNDGGSKHKDSKDEAKSSGSNPKGASTPKAADGSKTNGLSTKRKQKEKEGESSEEEEHVSAKISTGKKRRRKAHN |
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| Function | Sister chromatid cohesion protein PDS5 homolog B-B [UniProtKB/Swiss-Prot:Q5U241] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g42320 | LOC_Os04g42320.1 | Chr04 | 25038921 | 25045802 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTCGGACGGCGCGCAGATGGAGGTGGAGCGGCGGCTTCGCGACATCGGCGCCCGCTTCACCTCGCTCCCGGACGCCGACGACGAGCTGCTCAGATTAATCGAGGAGGCAGAAACCTGGTTGGCCAGGGTTGACCAGTCGCCGCCGGAGAGCATGCACAAGGCTCTCCGGCCAACAATGAGTGCTCTGATTAAGAAGGAGTTACTGGATCACAGTGTCCCTGACATAAAGCTTGCTGTTGCCTCCTGTTTAACGGAGGTTACCAGGATCACTGCCCCGGAGGCCCCCTATGACGATGATGTCATGAAGGATGTATTTACCAGAGTTGTTGAGGCCTTTGAGAAGTTGGATGATATGGAAAGCCCCTCCTATGCAAGGAGGGTTGCGATGCTTGAAACCGTTGCGAAGGTCCGGAGCTGTGTCTTGATGCTAGATCTTGACTGCGACGATCTGATACGGGACATGTTTCACCACTTCTTCAGAACCATATCCAATACTCATCAAGAGAATGTCATCACCTCGATGGAAACTGTGATGAAGTTTGTAATTGATGAGAGCGAAGATGTCCAGCAAGATATGCCATCCTGCCTGCTTCAAGATCTAGCATCTTACCTTCTGAAGAACCTTAAAAAGGAAGAAAAAGAAACTCTTCCAGCATCTTTCGAACTTGCAGAGAAGGTAATTAATAAGTGTTATGAGAAGTTAAAGCCAGTGTTTACTCCTTTACTTCGGGGCACTCCCTTGGATGAGTACAGCGAAGTTGTTACATCATTGTTCGAAGATGCTTTAGATGCTGGAGTAGCCGACAATTCTGATGCCCCTGGAAAGGATATGGTGGCTGATGGGAAATTATCTCATAAGATTGTTTCAGATGAGTCAGCTCAGGAATCATCAAAATTAGAGCAAGATGCCAATTGCCCTGGAAAAGACGGTACTCCTCCAAACAATACTTCCACTTCGGCGGTTAGCAATGGTTGTGCTTTAATAGACAGGGTCAAGTCTCCAAGTGGACCATCCTCTTCTGATAAGAAGGCTGAACTGCCTTCTGATGACAATCAGGCAAAAGACACTGATGATTTGATATCCGGTGCTAAAGAAATACCAGAACCAATCACCACAGAGCCTGAAAAGCCATCTGATCACAATTTAAAGAAAAGCCATAAACTTGATACTTCCACTGATTCTGAAGTGGTTGATCATTCTAAGGCTGTTAACAACAACGAGGATATTTTAGTCTCTAGGGAGTTATCCCCAGAGACTGATGATGGGGATAATAAGCTGCCACCAGAGACTGGGAATAGAGCTGCTGATGACAAATCGAAACATGTTGATAACACACCTGCTGGCAAGGGAAAGCGGGGCCGGCCTCCTGCATCAAAGTCGCATGAGAAGAAGAATGTTGGAAAAGGCAAAGTATCAGGTTTAGAGTCTAAAAAAGCTGACGCAGTTAGTGATTCTGGTGGAAGGGCTACAAGGCGACTAGCTAAAGATGATGATATCAAGTCTTCATTCAAAAAGACTGGTGAAGGGGAATCTTCGAAGAAGAAGCAGAAGGAAAATTTGAAACAGCAGGAAGATACTCCACCCGATGAAGACACTGATGAGGATCTCAGTTTAAAGGATATCGTATCTCCCAAGTCTTCGGCCAAAACAGGTAAAAACAAAGGCCAGGCAGGTGACAGTGGGGGCTCAAAAAGGAAACGTGCACAGGAAGCTGAAGAGACTCCCCAGCCCAAGAAGAACAAAATTCTTAAAGGAAATCTTGTTGGCTCAAGAATCAAAGTGTGGTGGCCTGATGACAGAAAGTTCTATAAAGGTGTTGTTGAGTCATTTGATGTTGCTTCAAAAAAGCACAAGGTTGTTTATGATGATGGAGATGTTGAACGCCTACACCTTAAGAATGAAAAATGGGAATTCATTGATGAGGGGCGAGACAACAATCCTGACGCATCGTCTGATATGCCGCACGGCAGAAGGGGTAGAGTTAGCTTGGGTGAGCAAACAAAGGAAGGAAAAATAGAAACACCCAGCAGTGGGAAACATCGTGGCACTGATGTCGCTGATCCTCCCAAGAAAAGAGGACGCCCTAAAGGTGTGCGCTCCAGCAATAGTTCACAAAATGATGACAGTCCTTTGAAGGGGAAAAGTGCAGAAAACGATGATGAAGATATATCCAAGACACCTAAAAGTGGCAGTGCCCTCAAGAATGAAGGTGGAAGATCATCTCGATCCACTGGCAAGACAAAGGATGGCCTGCTAAAGGGAAGCAACAAGGATGAGACTGGTAACACTAAAAGCGCAAGCAAATCAAAAAATGATGGTGGCAGCAAACACAAGGATTCAAAAGATGAAGCTAAATCCAGCGGATCAAATCCAAAAGGTGCAAGCACTCCCAAAGCTGCTGATGGATCCAAGACAAATGGTCTTTCGACCAAAAGAAAGCAAAAGGAGAAAGAAGGCGAGTCATCTGAAGAGGAAGAGCATGTGTCTGCTAAAATTTCTACTGGAAAGAAGCGCAGAAGGAAGGCTCATAACTAA
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| Protein seq | MASDGAQMEVERRLRDIGARFTSLPDADDELLRLIEEAETWLARVDQSPPESMHKALRPTMSALIKKELLDHSVPDIKLAVASCLTEVTRITAPEAPYDDDVMKDVFTRVVEAFEKLDDMESPSYARRVAMLETVAKVRSCVLMLDLDCDDLIRDMFHHFFRTISNTHQENVITSMETVMKFVIDESEDVQQDMPSCLLQDLASYLLKNLKKEEKETLPASFELAEKVINKCYEKLKPVFTPLLRGTPLDEYSEVVTSLFEDALDAGVADNSDAPGKDMVADGKLSHKIVSDESAQESSKLEQDANCPGKDGTPPNNTSTSAVSNGCALIDRVKSPSGPSSSDKKAELPSDDNQAKDTDDLISGAKEIPEPITTEPEKPSDHNLKKSHKLDTSTDSEVVDHSKAVNNNEDILVSRELSPETDDGDNKLPPETGNRAADDKSKHVDNTPAGKGKRGRPPASKSHEKKNVGKGKVSGLESKKADAVSDSGGRATRRLAKDDDIKSSFKKTGEGESSKKKQKENLKQQEDTPPDEDTDEDLSLKDIVSPKSSAKTGKNKGQAGDSGGSKRKRAQEAEETPQPKKNKILKGNLVGSRIKVWWPDDRKFYKGVVESFDVASKKHKVVYDDGDVERLHLKNEKWEFIDEGRDNNPDASSDMPHGRRGRVSLGEQTKEGKIETPSSGKHRGTDVADPPKKRGRPKGVRSSNSSQNDDSPLKGKSAENDDEDISKTPKSGSALKNEGGRSSRSTGKTKDGLLKGSNKDETGNTKSASKSKNDGGSKHKDSKDEAKSSGSNPKGASTPKAADGSKTNGLSTKRKQKEKEGESSEEEEHVSAKISTGKKRRRKAHN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.003244 | 4.463988 | 3.227009 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0501600 | RBH | 7.846730 | 8.791530 | 13.301417 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39920 | RBH | 3.631843 | 1.931076 | 3.021149 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0501600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018870 | SBH | 1.032823 | 13.222923 | 10.932137 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019640 | SBH | 0.449392 | 4.132885 | 3.224945 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019350 | SBH | 3.365250 | 13.098302 | 11.650710 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019090 | SBH | 0.588888 | 0.329843 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019300 | SBH | 6.792532 | 10.309721 | 20.710850 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0392700 | RBH | 23.170131 | 23.5767475 | 30.5391665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018100 | SBH | 0.786035 | 0.981752 | 1.682334 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0393100 | RBH | 22.952732 | 28.6512635 | 36.797375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018590 | SBH | 0.515044 | 0.227356 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018440 | SBH | 1.172769 | 8.077816 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018550 | SBH | 10.375357 | 17.159092 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018940 | SBH | 1.576586 | 1.042844 | 1.622586 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019090 | SBH | 0.630332 | 4.623092 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018380 | SBH | 0.871654 | 4.044178 | 3.888526 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018350 | SBH | 3.289518 | 12.619748 | 8.833554 |
