Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g41410 | OGI:04074670 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:24550546-24553400 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | TAGTATAAAATTACATATTTTTATTATGACATGACATAATTGAAGCTTGAAGACCAAGCAGAAATGATACTTTTATGTCAGTACAGTACATACTCTCATTCTTCAGTAAACTAGTCAGCTATACTATTTTTACAAACCTTGTTAGTCATCAGTTTAGGTACCACAAATATTGATGTTCTTCCTAAGACACAGTTTACGCAACTACTTTCAATATTGAAAATCTATTTTCTGGCCTTGCAAGATAGCGACAGATAGAGATAACATCACTGTACGCTAGATTGCATTGATTGTAACTTGTAAGTTCTGTCAAGCTGCCATAAGCCAATGGAGATTATAGGATATCTTTGTTACGATCTATACAACACAGACAGGCTAACAAAAGAAAATTAATCACAACTCTTTGTTTTCTCTTACCTATCTATTGCATACTGTTTGGATCTTTAAGCTCCAAAATTGTCGCCGTCTGATCTAACAGTACTGACCCTTTTCTTGTTGGCATATCTCCTAGCCCAGAATGCATAATTGATAAATGCCACCAGCTCGAAGGTTGCCAATAACAAGAAGAAGCGATCAAGGCGTGTCCTGTTGAAGTTTGTTCCATCTAACCATCCTCTTCCATTGTCTCCAAGCCTTGTCATTCTGTTGACGAGCTGGACAAAGGCACATCCTGACCAGGCTGCTATTCCGACCAGAAGAGACTGCACTGCTGGTGCAATATGCTTTGCTTCAGGTGCCTCGCTCTTTATGAACTGAACCAGCCCACCAATATATGCTATATCCATGATGCTTAGCAGGAAGAACTGCATCACCAGCCAGAAGACGGACATTGGGACACCGTCAGCTACTAATGTTAGCCCTTGCTGCTCCACGACCATCAACCTCTTTGCTTCCACCAACATGGCAATGCATGCTGCCATTATCCCACACGCAGAGGCAACACCGATGTGCTGCAGAGGGGTGATACCATTGGTGTGGCCTGTGAATATCCTCAGCAGTGGTATCAAGATTCTCCTGTAGCACGGTTGCATCAGCATGTGAAATGTTGTTGGGATTGCGATGAGAGAGGCAGAGGGTATCTGGATCATTCCTATCCCTGAGTCCATCGTGCTGCCAACCTGTATGGTTAACGTCATGAGCAATGTGAAGGGCAAGTAGGCGAATATGCAGCTGATGAAGATTGGAAGCATCCGAGTAATAGCCTCTGTTTTCTCATCAACTCGAGTAGTGCTGCAGAAAATACAAATTGTTTTTTCCCGTCATGTATTCAGGATTTGTCCACAAATATATTAGGGTATTATGGAGATTATGATTTCCACAAAAATAGGAATTATTATACTCTTGGTTCTCAACATTTATTTAAAAGTTAAAAGTTCATACATTGTTTTCAGAAATACATTGTTTTCTGGGGATTTTTTTATTATCAGGGAACTTACCAAATATTTTTGCTGTCACATTTGTCTTCCCCGTCCTCATCTACATGATCTGATGTACTGATCTCTTGCAGCTCAATAACATGAATAACAGCAGCCTGCCTCTTCTTTGATGATGTGACAAGAACCTGGAAAGGTACCAGTAATACAACTTCAAAACAATATGATCTTCTGTTTTCCTTGCTTTGTCTTGCTACATTCAATTTTGTTTTAGATTGATGTGTGGAAGGACTGCCCTAATTTCTTTATTGCTTGTAATTAATCTGTTATCTGAAATTTCTAGAAATAGGCATGGTGACTTTCCAGCAATAAGCATGGAAGGTAGAATAATGCAATGTAATGCTATCAGACAAAAGAGTATAAAACATAACTTGGATAACAGCATCCTTCTTGTATATATTTGACTTCCACAAAATGGATCGTGGATAATATAAAGCAACACTAACCAGTTGGCGTCAAAATAAATCAATCATACACAAATTCGTTATAATTAACATGCATACCAAATTAGACCGACAAACGTATATAATTGTGGCATATGATTTTTTACCTGCAATATTCTAGTTAGAGGACTTCCATTGAGCTTGCGCATTCCATAGAAAGGCAGTCCACTGGCTGCTATGAGCAGCCCTACAATAACAATAAGGGCACACAACAAAAAGCCAATGTCCCAACCCAGATTCTTCTCGATCCACACTAGGAATACCAATCCAATAAGTGCTCCAAGAGAGTTTGCAGACTTGAGCCAGCTTAAGAAGTTACTCCTGAGATGCGATGCTTCTGGATCATCATTGCTGAACTGATCTTCACCAAGGGCTGGTACGCAATCGCGCATGCAGCCCTCCCCAATGGCAAACATTAATAAGCTCAAGTAGAGCAGTGTTAAGTTCCAGCCTTGCGCTGGCTCACATTTGCTTGGATCTTTGTTTATCTCACAAATCGGAGGATGGAGTGAAGGCAAGTGCGCTTGCAATGCTAGCAACATATAGCCCTGCATTTCAAACACAAATTGATTATAACTCAGCATTTTAAAAAACCCTACCTCCTCATCTTAGAAGCTTAAAATGTCCTGAAAGCATATACTATCTCCCTCGTCTTAAAATCCTGTACTAATTCTTTTAGGCGAATAAAAGCTTCGATTTGATTACTCATTCGAACAAAATGTTAGCAAATCGAAAGTGACACGAAAAATATGCTTCCAAAGTGTTCGATTCTAACATTTGGGGATGCCATTGTAAACTCACCTCCACCCTAGTACGATTTTCTCCCAATTCTGCCTATTACATCTTCCTTAACCTCGCCGGCTCGTCCTCACCCACCCACCCCCCCCCCCCGGCTCCCTCCTGCTGCTCCTCCTCCGGCGAACTCTTCTCGTAGCCATCGGTGATCGCCCTGCTTCTCCGCTCTCGCTTGATCCCACGTCAT
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| CDS seq | ATGACGTGGGATCAAGCGAGAGCGGAGAAGCAGGGCGATCACCGATGGCTACGAGAAGAGTTCGCCGGAGGAGGAGCAGCAGGAGGGAGCCGGGGGGGGGGGGGCTATATGTTGCTAGCATTGCAAGCGCACTTGCCTTCACTCCATCCTCCGATTTGTGAGATAAACAAAGATCCAAGCAAATGTGAGCCAGCGCAAGGCTGGAACTTAACACTGCTCTACTTGAGCTTATTAATGTTTGCCATTGGGGAGGGCTGCATGCGCGATTGCGTACCAGCCCTTGGTGAAGATCAGTTCAGCAATGATGATCCAGAAGCATCGCATCTCAGGAGTAACTTCTTAAGCTGGCTCAAGTCTGCAAACTCTCTTGGAGCACTTATTGGATTGGTATTCCTAGTGTGGATCGAGAAGAATCTGGGTTGGGACATTGGCTTTTTGTTGTGTGCCCTTATTGTTATTGTAGGGCTGCTCATAGCAGCCAGTGGACTGCCTTTCTATGGAATGCGCAAGCTCAATGGAAGTCCTCTAACTAGAATATTGCAGGTTCTTGTCACATCATCAAAGAAGAGGCAGGCTGCTGTTATTCATGTTATTGAGCTGCAAGAGATCAGTACATCAGATCATGTAGATGAGGACGGGGAAGACAAATGTGACAGCAAAAATATTTGCACTACTCGAGTTGATGAGAAAACAGAGGCTATTACTCGGATGCTTCCAATCTTCATCAGCTGCATATTCGCCTACTTGCCCTTCACATTGCTCATGACGTTAACCATACAGGTTGGCAGCACGATGGACTCAGGGATAGGAATGATCCAGATACCCTCTGCCTCTCTCATCGCAATCCCAACAACATTTCACATGCTGATGCAACCGTGCTACAGGAGAATCTTGATACCACTGCTGAGGATATTCACAGGCCACACCAATGGTATCACCCCTCTGCAGCACATCGGTGTTGCCTCTGCGTGTGGGATAATGGCAGCATGCATTGCCATGTTGGTGGAAGCAAAGAGGTTGATGGTCGTGGAGCAGCAAGGGCTAACATTAGTAGCTGACGGTGTCCCAATGTCCGTCTTCTGGCTGGTGATGCAGTTCTTCCTGCTAAGCATCATGGATATAGCATATATTGGTGGGCTGGTTCAGTTCATAAAGAGCGAGGCACCTGAAGCAAAGCATATTGCACCAGCAGTGCAGTCTCTTCTGGTCGGAATAGCAGCCTGGTCAGGATGTGCCTTTGTCCAGCTCGTCAACAGAATGACAAGGCTTGGAGACAATGGAAGAGGATGGTTAGATGGAACAAACTTCAACAGGACACGCCTTGATCGCTTCTTCTTGTTATTGGCAACCTTCGAGCTGGTGGCATTTATCAATTATGCATTCTGGGCTAGGAGATATGCCAACAAGAAAAGGGTCAGTACTGTTAGATCAGACGGCGACAATTTTGGAGCTTAA
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| Protein seq | MTWDQARAEKQGDHRWLREEFAGGGAAGGSRGGGGYMLLALQAHLPSLHPPICEINKDPSKCEPAQGWNLTLLYLSLLMFAIGEGCMRDCVPALGEDQFSNDDPEASHLRSNFLSWLKSANSLGALIGLVFLVWIEKNLGWDIGFLLCALIVIVGLLIAASGLPFYGMRKLNGSPLTRILQVLVTSSKKRQAAVIHVIELQEISTSDHVDEDGEDKCDSKNICTTRVDEKTEAITRMLPIFISCIFAYLPFTLLMTLTIQVGSTMDSGIGMIQIPSASLIAIPTTFHMLMQPCYRRILIPLLRIFTGHTNGITPLQHIGVASACGIMAACIAMLVEAKRLMVVEQQGLTLVADGVPMSVFWLVMQFFLLSIMDIAYIGGLVQFIKSEAPEAKHIAPAVQSLLVGIAAWSGCAFVQLVNRMTRLGDNGRGWLDGTNFNRTRLDRFFLLLATFELVAFINYAFWARRYANKKRVSTVRSDGDNFGA |
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| Function | Protein NRT1/ PTR FAMILY 4.6 [UniProtKB/Swiss-Prot:Q8H157] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g41410 | LOC_Os04g41410.1 | Chr04 | 24550546 | 24553400 | - | MSU_osa1r7 | ||
| CDS seq | ATGACGTGGGATCAAGCGAGAGCGGAGAAGCAGGGCGATCACCGATGGCTACGAGAAGAGTTCGCCGGAGGAGGAGCAGCAGGAGGGAGCCGGGGGGGGGGGGGCTATATGTTGCTAGCATTGCAAGCGCACTTGCCTTCACTCCATCCTCCGATTTGTGAGATAAACAAAGATCCAAGCAAATGTGAGCCAGCGCAAGGCTGGAACTTAACACTGCTCTACTTGAGCTTATTAATGTTTGCCATTGGGGAGGGCTGCATGCGCGATTGCGTACCAGCCCTTGGTGAAGATCAGTTCAGCAATGATGATCCAGAAGCATCGCATCTCAGGAGTAACTTCTTAAGCTGGCTCAAGTCTGCAAACTCTCTTGGAGCACTTATTGGATTGGTATTCCTAGTGTGGATCGAGAAGAATCTGGGTTGGGACATTGGCTTTTTGTTGTGTGCCCTTATTGTTATTGTAGGGCTGCTCATAGCAGCCAGTGGACTGCCTTTCTATGGAATGCGCAAGCTCAATGGAAGTCCTCTAACTAGAATATTGCAGGTTCTTGTCACATCATCAAAGAAGAGGCAGGCTGCTGTTATTCATGTTATTGAGCTGCAAGAGATCAGTACATCAGATCATGTAGATGAGGACGGGGAAGACAAATGTGACAGCAAAAATATTTGCACTACTCGAGTTGATGAGAAAACAGAGGCTATTACTCGGATGCTTCCAATCTTCATCAGCTGCATATTCGCCTACTTGCCCTTCACATTGCTCATGACGTTAACCATACAGGTTGGCAGCACGATGGACTCAGGGATAGGAATGATCCAGATACCCTCTGCCTCTCTCATCGCAATCCCAACAACATTTCACATGCTGATGCAACCGTGCTACAGGAGAATCTTGATACCACTGCTGAGGATATTCACAGGCCACACCAATGGTATCACCCCTCTGCAGCACATCGGTGTTGCCTCTGCGTGTGGGATAATGGCAGCATGCATTGCCATGTTGGTGGAAGCAAAGAGGTTGATGGTCGTGGAGCAGCAAGGGCTAACATTAGTAGCTGACGGTGTCCCAATGTCCGTCTTCTGGCTGGTGATGCAGTTCTTCCTGCTAAGCATCATGGATATAGCATATATTGGTGGGCTGGTTCAGTTCATAAAGAGCGAGGCACCTGAAGCAAAGCATATTGCACCAGCAGTGCAGTCTCTTCTGGTCGGAATAGCAGCCTGGTCAGGATGTGCCTTTGTCCAGCTCGTCAACAGAATGACAAGGCTTGGAGACAATGGAAGAGGATGGTTAGATGGAACAAACTTCAACAGGACACGCCTTGATCGCTTCTTCTTGTTATTGGCAACCTTCGAGCTGGTGGCATTTATCAATTATGCATTCTGGGCTAGGAGATATGCCAACAAGAAAAGGGTCAGTACTGTTAGATCAGACGGCGACAATTTTGGAGCTTAA
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| Protein seq | MTWDQARAEKQGDHRWLREEFAGGGAAGGSRGGGGYMLLALQAHLPSLHPPICEINKDPSKCEPAQGWNLTLLYLSLLMFAIGEGCMRDCVPALGEDQFSNDDPEASHLRSNFLSWLKSANSLGALIGLVFLVWIEKNLGWDIGFLLCALIVIVGLLIAASGLPFYGMRKLNGSPLTRILQVLVTSSKKRQAAVIHVIELQEISTSDHVDEDGEDKCDSKNICTTRVDEKTEAITRMLPIFISCIFAYLPFTLLMTLTIQVGSTMDSGIGMIQIPSASLIAIPTTFHMLMQPCYRRILIPLLRIFTGHTNGITPLQHIGVASACGIMAACIAMLVEAKRLMVVEQQGLTLVADGVPMSVFWLVMQFFLLSIMDIAYIGGLVQFIKSEAPEAKHIAPAVQSLLVGIAAWSGCAFVQLVNRMTRLGDNGRGWLDGTNFNRTRLDRFFLLLATFELVAFINYAFWARRYANKKRVSTVRSDGDNFGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.132717 | 0.121588 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0491350 | RBH | 0.000000 | 0.240934 | 0.576723 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0491350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018170 | RBH | 0.000000 | 7.891736 | 0.545164 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018950 | RBH | 0.000000 | 1.176281 | 0.358577 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018660 | RBH | 0.157701 | 28.965307 | 1.945760 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018370 | RBH | 0.0 | 0.414421 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018560 | SBH | 1.151093 | 7.849608 | 4.446796 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0383700 | RBH | 9.0941355 | 23.128197 | 28.875256 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017350 | SBH | 0.000000 | 0.962984 | 0.395520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0338900 | SBH | 7.76006 | 10.5775585 | 1.5837065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017850 | SBH | 0.062070 | 0.064055 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017690 | SBH | 0.100468 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017770 | SBH | 0.000000 | 0.559480 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018190 | SBH | 0.000000 | 0.131494 | 0.470778 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018350 | RBH | 0.000000 | 0.706599 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017650 | SBH | 0.0 | 0.294610 | 0.267948 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017590 | SBH | 0.000000 | 4.372428 | 1.183992 |
