Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os04g40770		OGI:04097750 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr04:24192009-24195350		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		OsFbox222, Os_F0047
DNA seq		ATGGCCAGAGGAGGTTCAAAACTTCCAATCCGCAAGCATAACATGACAAGCTCAGATTTGCGTCTCGCTCCGCCAACGCGAGGCAGCAGCCATGGATATGCCCATGGAGAACCGGCCATAGCTGGCGACAGTCGACGACAAACAGTATTCGGGCATATTTTCGAGGGTAATTTGGAACCATGCCATTATAATTTTGCAAAGTTTGAGATATGTCATCGGTATCTCAATGACATGTAGCATCCACATGAGTCAATGACATGTGGGTCAGGATGGTATATCTCAAATTTTATAAAATTATAATGGCATGGTTTCAATTTTTCCTATTTTTATTTTCGAAGGACATGGGCCTTACCGTGGCAGGCCTAAGCAGCCAGCGTCGGAGTCGGATGTTGGAGTTGGAATCGGAAACGAGTCAAACGACTACGCAGCGGCAGCGTCACAGACAAATAGGAGGTACGGGCAGGTTTTCCTGTTCAGAAACACATTATCGCGCCGTAGGTCGTCCGTTCCCTCTTGCTCCCAAAGAACATAAGTACCCCTGCTGCAGTTCAGGCCTTCAGAGGACAAGGCACGATGAGCCTGAGCGATTTGCCGGATGAGGCCCTGCTCGTCATCCTGAACAAGCTGGACACACGGGAGGCCTTGAGATGCAGCGTCCTCTCGAGGCGGTGGAGGCGCGTCCCCGGCATGCTCCCCAACATCGAGCTGGACGTCGACTCGTTCACGCCCGACCACGACGACGGCTTCACGTCCACGCTATCCGACGACGCGAGGAACAGCTACGCGATGGTGAGCGCGGTGCAGAGCCTCCTGTCGCACGAGAGCCGGCACGACATCCGCCGTCTGGACCTGAGCTTCTTCTCGAGGGACGAGTCCGTCGGCATCATCCACGCCATCGACGACGCCATGGCCCGTGGCCGCAGGATCCTCAAAATGTGTTTTGACGTCGTGTCGGAGAAGTGTTACCTGGAGTGCCCGGACAGGGACAGGGTCAAGCAAGGGAAGCGCCTTCTGTACTGCTTCGACGCCTACCCGCACGTGTTCGCCGGCCTCACCAGCCTACATCTGGAGTGCATCACGGTGCAAGGACCATGCTTCTCCAACGTGATCACCGCGTGCGAGAAGCTCAGCTACCTCTCACTCGTCTACTGCGACTTCGGTGAGGAGACACCGCTGACGATCCACCACGAGCACCTCCGCGTGGTGAAGCTCGAGTTCTGCACCTGTGACACCGTCGAGCTGGAGGTGCCAGATCTGTTGAAGCTGATGATGTCCGTCTGGTCATGGTCACCTCGTCGGTATCCCTTCGTGTTTGGCCATGCCCCACGGCTCCAACGGCTAGAGCTAGCTCATGCTGGTCTAATTGATTCCAAAATGCTCCAACTGAGCAAGCTACTTGACAATTGTACAAGCCTTCGTGAACTGTGGTTGAACTTTGAAAGAGAAAAGGTAAGTCAATCGAAGCACCGCTAATATTGGTAGCAAACCTTCACACGAGAATTTGTATTTATTGCTAGTCTTGTTTTCTTTTATCTTATGCAGATATGGATTCTACCTGAGACCCCAACACGATTGGCTCCTCTTTTAAATAATTTGACGTTTGTTGGTGTGCACCGTATTCATCCAAACAGCGGCATCACTTGGACACTGTTTCTTTTGGAAGCGGCACCTCTTTTGAAGATGCTCAGTATTAAGGTACTACATTCATTCTTCATTCTCGTTTACCCGACAGTTATTTAATACACCCTATAGTCATAAATATTTAAAGTTTAGGATGAGATTTTATTCAACTCCCGAAATTTTTACCACTAATAACTTCTCAAATACTTTATTTAAAAAGAAAAAATGGCTTGTGTACATTTAGCTTAAATCTATTTATAGCCAATATTTTGGCTTGTCATAAACATCAAATATTTATAACGAGATGGAGTATATATTCACTGTTGATGCTTCTCTGAACTTTTGTGTTATTGAACACTAAAATCTAAATCTGATCTTTATGTAGGTGACGGACCATCAATGTAAACCAATTGAGGGAGAACTGCTAAAGAGAACTTTATGTGAGAAAAACAACATATACTGGGAACCGTCTGATTTCAAGCACTACAGTTTGACCATGCTCATATTTTATGGCTTTCAACCTGGAAAAAAATGCATGGAGTACATAAGACAAGTCATAAAAAGGGCAGTGAATTTGGAAGACATATTATTGCACGATGATAGGTGTGAGGTGTGCAAGTCCTATTATCCAGTTACACGATATCCACGGACCAAGAAAGAGAGAGATTTGGTAAAGAAAGCAATCAACGAGGGAAGAACATCGCCTATCGAAAGGATTCAGTTTTTTCACACATCTGAAGCTGGAACAGTGAAGACTATCGATTAACTAGTCCTAAACAGTTTGTATTTGTTGCAAGTTTAGTACCATATGCTCATAGTCGCAAGTTGTGTAAATCGCAAGCTGTGTAATAGTTATTATGGTTATTGATGAAACCAAATAAAATTTGGATAAATGTCGTTAAAAAAAATGCATTTTAGTATAAATATTTATAAAGTAGACTGATTTGTGTAGCCATCTCGCATAACGTATCGCGTTGATAACTCATATTGTGCAATGACTATGGTTCTGAAACCCTACGTCTCACCCGTTCCTCCATATACCGCTGGAAGTCTACTCGAAATGTTCCTCCCATCATGTCGACCCTGTGCCACAAGCTCATTGCCGCGGCCACCTCCTTGGGCAATGTACTGCTTCACAGAAGCTGGCCTTAGTCAAAACAATGGCGAATAGTGAACAAAACTGCGGTCAGCTTCAATGTGCCTGGGAAAAACCTATCGTGTTGCTCTCCCCCAAAGGCCACTCGCGAGGCGACGACCCGGCCGCCCCCTCTCCTTGCGGCAGCGGGGCTTCTTGCTTCTAGCGCTCAGGCGGACAGGGGACCCGCCCAGGGCGGCGACGGCAATGACCACCAGATCCGTACCGCTCCGATCGAATCTTGCGGGGCGGCGGCTGGCGACGGGGATGGCGATGGCAGCGGGGATGGCGACGGTCGGGGTGAGCAACGCCGAGCAGGGATGCGGCCGATGGCGGCGGGGATGGCGACGGCGGTGGTGGAGTCCGCGGATCCGGCGGCGGCGCGGCGTTGGACGGTGCTGCAAGCGGCCTGCCCCACGTCTGGCGCTGGCGTTTGTGGTGCTCCCACGCTGGTGGTGGCGCTGTGGCGTCAGCAGGCGGTGGTGGTGAGGAGGACGGCTAGATCTGGCTCTAGGTTCAGATCCGACGCGTCATTAGTCAGGTCAGGGGTGGCATGGAGTCCGGTTGTTGTGATCTTCGATATGTAG More
CDS seq		ATGGCCAGAGGAGGTTCAAAACTTCCAATCCGCAAGCATAACATGACAAGCTCAGATTTGCGTCTCGCTCCGCCAACGCGAGGCAGCAGCCATGGATATGCCCATGGAGAACCGGCCATAGCTGGCGACAGTCGACGACAAACAGTATTCGGGCATATTTTCGAGGGACATGGGCCTTACCGTGGCAGGCCTAAGCAGCCAGCGTCGGAGTCGGATGTTGGAGTTGGAATCGGAAACGAGTCAAACGACTACGCAGCGGCAGCGTCACAGACAAATAGGAGGTACGGGCAGGTCGTCCGTTCCCTCTTGCTCCCAAAGAACATAAGTACCCCTGCTGCAGTTCAGGCCTTCAGAGGACAAGGCACGATGAGCCTGAGCGATTTGCCGGATGAGGCCCTGCTCGTCATCCTGAACAAGCTGGACACACGGGAGGCCTTGAGATGCAGCGTCCTCTCGAGGCGGTGGAGGCGCGTCCCCGGCATGCTCCCCAACATCGAGCTGGACGTCGACTCGTTCACGCCCGACCACGACGACGGCTTCACGTCCACGCTATCCGACGACGCGAGGAACAGCTACGCGATGGTGAGCGCGGTGCAGAGCCTCCTGTCGCACGAGAGCCGGCACGACATCCGCCGTCTGGACCTGAGCTTCTTCTCGAGGGACGAGTCCGTCGGCATCATCCACGCCATCGACGACGCCATGGCCCGTGGCCGCAGGATCCTCAAAATGTGTTTTGACGTCGTGTCGGAGAAGTGTTACCTGGAGTGCCCGGACAGGGACAGGGTCAAGCAAGGGAAGCGCCTTCTGTACTGCTTCGACGCCTACCCGCACGTGTTCGCCGGCCTCACCAGCCTACATCTGGAGTGCATCACGGTGCAAGGACCATGCTTCTCCAACGTGATCACCGCGTGCGAGAAGCTCAGCTACCTCTCACTCGTCTACTGCGACTTCGGTGAGGAGACACCGCTGACGATCCACCACGAGCACCTCCGCGTGGTGAAGCTCGAGTTCTGCACCTGTGACACCGTCGAGCTGGAGGTGCCAGATCTGTTGAAGCTGATGATGTCCGTCTGGTCATGGTCACCTCGTCGGTATCCCTTCGTGTTTGGCCATGCCCCACGGCTCCAACGGCTAGAGCTAGCTCATGCTGGTCTAATTGATTCCAAAATGCTCCAACTGAGCAAGCTACTTGACAATTGTACAAGCCTTCGTGAACTGTGGTTGAACTTTGAAAGAGAAAAGATATGGATTCTACCTGAGACCCCAACACGATTGGCTCCTCTTTTAAATAATTTGACGTTTGTTGGTGTGCACCGTATTCATCCAAACAGCGGCATCACTTGGACACTGTTTCTTTTGGAAGCGGCACCTCTTTTGAAGATGCTCAGTATTAAGGTGACGGACCATCAATGTAAACCAATTGAGGGAGAACTGCTAAAGAGAACTTTATGTGAGAAAAACAACATATACTGGGAACCGTCTGATTTCAAGCACTACAGTTTGACCATGCTCATATTTTATGGCTTTCAACCTGGAAAAAAATGCATGGAGTACATAAGACAAGTCATAAAAAGGGCAGTGAATTTGGAAGACATATTATTGCACGATGATAGGTGTGAGGCCACTCGCGAGGCGACGACCCGGCCGCCCCCTCTCCTTGCGGCAGCGGGGCTTCTTGCTTCTAGCGCTCAGGCGGACAGGGGACCCGCCCAGGGCGGCGACGGCAATGACCACCAGATCCGTACCGCTCCGATCGAATCTTGCGGGGCGGCGGCTGGCGACGGGGATGGCGATGGCAGCGGGGATGGCGACGGTCGGGGTGAGCAACGCCGAGCAGGGATGCGGCCGATGGCGGCGGGGATGGCGACGGCGGTGGTGGAGTCCGCGGATCCGGCGGCGGCGCGGCGTTGGACGGTGCTGCAAGCGGCCTGCCCCACGTCTGGCGCTGGCGTTTGTGGTGCTCCCACGCTGGTGGTGGCGCTGTGGCGTCAGCAGGCGGTGGTGGTGAGGAGGACGGCTAGATCTGGCTCTAGGTTCAGATCCGACGCGTCATTAGTCAGGTCAGGGGTGGCATGGAGTCCGGTTGTTGTGATCTTCGATATGTAG More
Protein seq		MARGGSKLPIRKHNMTSSDLRLAPPTRGSSHGYAHGEPAIAGDSRRQTVFGHIFEGHGPYRGRPKQPASESDVGVGIGNESNDYAAAASQTNRRYGQVVRSLLLPKNISTPAAVQAFRGQGTMSLSDLPDEALLVILNKLDTREALRCSVLSRRWRRVPGMLPNIELDVDSFTPDHDDGFTSTLSDDARNSYAMVSAVQSLLSHESRHDIRRLDLSFFSRDESVGIIHAIDDAMARGRRILKMCFDVVSEKCYLECPDRDRVKQGKRLLYCFDAYPHVFAGLTSLHLECITVQGPCFSNVITACEKLSYLSLVYCDFGEETPLTIHHEHLRVVKLEFCTCDTVELEVPDLLKLMMSVWSWSPRRYPFVFGHAPRLQRLELAHAGLIDSKMLQLSKLLDNCTSLRELWLNFEREKIWILPETPTRLAPLLNNLTFVGVHRIHPNSGITWTLFLLEAAPLLKMLSIKVTDHQCKPIEGELLKRTLCEKNNIYWEPSDFKHYSLTMLIFYGFQPGKKCMEYIRQVIKRAVNLEDILLHDDRCEATREATTRPPPLLAAAGLLASSAQADRGPAQGGDGNDHQIRTAPIESCGAAAGDGDGDGSGDGDGRGEQRRAGMRPMAAGMATAVVESADPAAARRWTVLQAACPTSGAGVCGAPTLVVALWRQQAVVVRRTARSGSRFRSDASLVRSGVAWSPVVVIFDM
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os04g40770	LOC_Os04g40770.1	Chr04	24192009	24195350	+	MSU_osa1r7
CDS seq	ATGGCCAGAGGAGGTTCAAAACTTCCAATCCGCAAGCATAACATGACAAGCTCAGATTTGCGTCTCGCTCCGCCAACGCGAGGCAGCAGCCATGGATATGCCCATGGAGAACCGGCCATAGCTGGCGACAGTCGACGACAAACAGTATTCGGGCATATTTTCGAGGGACATGGGCCTTACCGTGGCAGGCCTAAGCAGCCAGCGTCGGAGTCGGATGTTGGAGTTGGAATCGGAAACGAGTCAAACGACTACGCAGCGGCAGCGTCACAGACAAATAGGAGGTACGGGCAGGTCGTCCGTTCCCTCTTGCTCCCAAAGAACATAAGTACCCCTGCTGCAGTTCAGGCCTTCAGAGGACAAGGCACGATGAGCCTGAGCGATTTGCCGGATGAGGCCCTGCTCGTCATCCTGAACAAGCTGGACACACGGGAGGCCTTGAGATGCAGCGTCCTCTCGAGGCGGTGGAGGCGCGTCCCCGGCATGCTCCCCAACATCGAGCTGGACGTCGACTCGTTCACGCCCGACCACGACGACGGCTTCACGTCCACGCTATCCGACGACGCGAGGAACAGCTACGCGATGGTGAGCGCGGTGCAGAGCCTCCTGTCGCACGAGAGCCGGCACGACATCCGCCGTCTGGACCTGAGCTTCTTCTCGAGGGACGAGTCCGTCGGCATCATCCACGCCATCGACGACGCCATGGCCCGTGGCCGCAGGATCCTCAAAATGTGTTTTGACGTCGTGTCGGAGAAGTGTTACCTGGAGTGCCCGGACAGGGACAGGGTCAAGCAAGGGAAGCGCCTTCTGTACTGCTTCGACGCCTACCCGCACGTGTTCGCCGGCCTCACCAGCCTACATCTGGAGTGCATCACGGTGCAAGGACCATGCTTCTCCAACGTGATCACCGCGTGCGAGAAGCTCAGCTACCTCTCACTCGTCTACTGCGACTTCGGTGAGGAGACACCGCTGACGATCCACCACGAGCACCTCCGCGTGGTGAAGCTCGAGTTCTGCACCTGTGACACCGTCGAGCTGGAGGTGCCAGATCTGTTGAAGCTGATGATGTCCGTCTGGTCATGGTCACCTCGTCGGTATCCCTTCGTGTTTGGCCATGCCCCACGGCTCCAACGGCTAGAGCTAGCTCATGCTGGTCTAATTGATTCCAAAATGCTCCAACTGAGCAAGCTACTTGACAATTGTACAAGCCTTCGTGAACTGTGGTTGAACTTTGAAAGAGAAAAGATATGGATTCTACCTGAGACCCCAACACGATTGGCTCCTCTTTTAAATAATTTGACGTTTGTTGGTGTGCACCGTATTCATCCAAACAGCGGCATCACTTGGACACTGTTTCTTTTGGAAGCGGCACCTCTTTTGAAGATGCTCAGTATTAAGGTGACGGACCATCAATGTAAACCAATTGAGGGAGAACTGCTAAAGAGAACTTTATGTGAGAAAAACAACATATACTGGGAACCGTCTGATTTCAAGCACTACAGTTTGACCATGCTCATATTTTATGGCTTTCAACCTGGAAAAAAATGCATGGAGTACATAAGACAAGTCATAAAAAGGGCAGTGAATTTGGAAGACATATTATTGCACGATGATAGGTGTGAGGCCACTCGCGAGGCGACGACCCGGCCGCCCCCTCTCCTTGCGGCAGCGGGGCTTCTTGCTTCTAGCGCTCAGGCGGACAGGGGACCCGCCCAGGGCGGCGACGGCAATGACCACCAGATCCGTACCGCTCCGATCGAATCTTGCGGGGCGGCGGCTGGCGACGGGGATGGCGATGGCAGCGGGGATGGCGACGGTCGGGGTGAGCAACGCCGAGCAGGGATGCGGCCGATGGCGGCGGGGATGGCGACGGCGGTGGTGGAGTCCGCGGATCCGGCGGCGGCGCGGCGTTGGACGGTGCTGCAAGCGGCCTGCCCCACGTCTGGCGCTGGCGTTTGTGGTGCTCCCACGCTGGTGGTGGCGCTGTGGCGTCAGCAGGCGGTGGTGGTGAGGAGGACGGCTAGATCTGGCTCTAGGTTCAGATCCGACGCGTCATTAGTCAGGTCAGGGGTGGCATGGAGTCCGGTTGTTGTGATCTTCGATATGTAG More
Protein seq	MARGGSKLPIRKHNMTSSDLRLAPPTRGSSHGYAHGEPAIAGDSRRQTVFGHIFEGHGPYRGRPKQPASESDVGVGIGNESNDYAAAASQTNRRYGQVVRSLLLPKNISTPAAVQAFRGQGTMSLSDLPDEALLVILNKLDTREALRCSVLSRRWRRVPGMLPNIELDVDSFTPDHDDGFTSTLSDDARNSYAMVSAVQSLLSHESRHDIRRLDLSFFSRDESVGIIHAIDDAMARGRRILKMCFDVVSEKCYLECPDRDRVKQGKRLLYCFDAYPHVFAGLTSLHLECITVQGPCFSNVITACEKLSYLSLVYCDFGEETPLTIHHEHLRVVKLEFCTCDTVELEVPDLLKLMMSVWSWSPRRYPFVFGHAPRLQRLELAHAGLIDSKMLQLSKLLDNCTSLRELWLNFEREKIWILPETPTRLAPLLNNLTFVGVHRIHPNSGITWTLFLLEAAPLLKMLSIKVTDHQCKPIEGELLKRTLCEKNNIYWEPSDFKHYSLTMLIFYGFQPGKKCMEYIRQVIKRAVNLEDILLHDDRCEATREATTRPPPLLAAAGLLASSAQADRGPAQGGDGNDHQIRTAPIESCGAAAGDGDGDGSGDGDGRGEQRRAGMRPMAAGMATAVVESADPAAARRWTVLQAACPTSGAGVCGAPTLVVALWRQQAVVVRRTARSGSRFRSDASLVRSGVAWSPVVVIFDM More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_04g0376200	SBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os04g40760	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os04g0376200	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_04g0017570	SBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_04g0018360	SBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_04g0018060	SBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_04g0017780	SBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_04g0017990	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_04G0377500	SBH	0	0.012703	0.004232
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_04g0016780	SBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_04G0376600	RBH	0	0	0.0261495
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_04g0017300	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_04g0017140	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_04g0017150	SBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_04g0017650	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_04g0017770	SBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_04G017070	SBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_04g0016990	SBH	0.0	0.0	0.0

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.