Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
Os04g0376200 | OGI:04057500 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:18379186-18380298 | ||||||||
Gene Symbol | OsFbox201, Os_F0552, OsFbox202, Os_F0749, OsFbox222, Os_F0047, OsFbox223, Os_F0055, OsFbox224, Os_F0093 | ||||||||||
DNA seq | ATGATCGACACCGCCGTCGGGGAGTGGGGCGTCGAGCACCTCGACGTCGTCGTCCTCAGGTCCGCGCCGCGCGACCCCCCGCTGCCGGTGTACGCCTTCCCGGACCACCTCCTCGACGACGAGCGCCACCGCTCGCGCCTCCGCAGCCTGACGCTGGGCCACTGCGCGCTGCCGCCACTGCACCGGTACGCCGCGCTGGAGCGGCTCGTCCTGCAGGACACGGCGGCGTCCACCCCGATGTCCGCGTACGACGCCGTGTTCGGTGGGTGCCGCCGCCTGCGGGTGGTGCACCTCCTGTGCTGCCGCGGCGCGGGCGACGCCCTGGTAATCGACGCGCCGCGCTCCGGCGTGGAGGAGCTCGTCGTGGACAGCTGCTCGTTCCGGGCTGTCGAGCTGCGCGGCCTCCCCGAGCTCCGCCGCCTCGCGTGCCTCGGCGACGGCACCGTGCCGGTGGTGGAGCTCAGCTTCGGCGCCGTCCCGCGCCTCACGCACGTCAACCTCACGTTCGCCGCCCCCACGTCCCCGGCGACGCCGCCCCACCACCGCGTCCTCGACTCCCTCCTCGGGGGCGCGCCGCCGGCGTCGATGTCGAGGCTCGCCGTCCGCTTCACCGGGCCGAAGCGGTGGATCCTCCCGCGCCCGCTCGGCGCCGCGCTGCTCGGCCTGAGGGAGCTCCTCGTCGCCGACGTGCCGCCCACCTGGGACGTCTCGTGGCCGCGCCTCCTCCTCGAGGCGGCGCCGGCGCTCGAGTCGCTGCACATCCACGTCTCCGCGCCCGCCCCCTCGCCGGACGAACACCTGGGGCGGCCGATCTACTGGCAGCCGCGGCGCAAGTTCCGGCACCGGCGGCTGAGGGAGGTGCGCATGGTGGGGTTCGCGGCGAGCGCGCCGCGGCATACGCGGTTCCTGAGGTACCTGGTGCGGGTGTGCGCGACATTGGAGCGCGTGGTGCTCGTCCGGGACGGGCGCGTCGAGGAAGACGGGCTCTGGGGGTGGAACACGGTGAGCAATGGCGATCGGCCGTGGAGGCTGGACGATTGGATCTCGGTCAGTGCGCAGATTAAGCATGGTAGAACTTGGTCGAAGCCTCATGTTGAGGTGATTTTGAAATAG
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CDS seq | ATGATCGACACCGCCGTCGGGGAGTGGGGCGTCGAGCACCTCGACGTCGTCGTCCTCAGGTCCGCGCCGCGCGACCCCCCGCTGCCGGTGTACGCCTTCCCGGACCACCTCCTCGACGACGAGCGCCACCGCTCGCGCCTCCGCAGCCTGACGCTGGGCCACTGCGCGCTGCCGCCACTGCACCGGTACGCCGCGCTGGAGCGGCTCGTCCTGCAGGACACGGCGGCGTCCACCCCGATGTCCGCGTACGACGCCGTGTTCGGTGGGTGCCGCCGCCTGCGGGTGGTGCACCTCCTGTGCTGCCGCGGCGCGGGCGACGCCCTGGTAATCGACGCGCCGCGCTCCGGCGTGGAGGAGCTCGTCGTGGACAGCTGCTCGTTCCGGGCTGTCGAGCTGCGCGGCCTCCCCGAGCTCCGCCGCCTCGCGTGCCTCGGCGACGGCACCGTGCCGGTGGTGGAGCTCAGCTTCGGCGCCGTCCCGCGCCTCACGCACGTCAACCTCACGTTCGCCGCCCCCACGTCCCCGGCGACGCCGCCCCACCACCGCGTCCTCGACTCCCTCCTCGGGGGCGCGCCGCCGGCGTCGATGTCGAGGCTCGCCGTCCGCTTCACCGGGCCGAAGCGGTGGATCCTCCCGCGCCCGCTCGGCGCCGCGCTGCTCGGCCTGAGGGAGCTCCTCGTCGCCGACGTGCCGCCCACCTGGGACGTCTCGTGGCCGCGCCTCCTCCTCGAGGCGGCGCCGGCGCTCGAGTCGCTGCACATCCACGTCTCCGCGCCCGCCCCCTCGCCGGACGAACACCTGGGGCGGCCGATCTACTGGCAGCCGCGGCGCAAGTTCCGGCACCGGCGGCTGAGGGAGGTGCGCATGGTGGGGTTCGCGGCGAGCGCGCCGCGGCATACGCGGTTCCTGAGGTACCTGGTGCGGGTGTGCGCGACATTGGAGCGCGTGGTGCTCGTCCGGGACGGGCGCGTCGAGGAAGACGGGCTCTGGGGGTGGAACACGGTGAGCAATGGCGATCGGCCGTGGAGGCTGGACGATTGGATCTCGGTCAGTGCGCAGATTAAGCATGGTAGAACTTGGTCGAAGCCTCATGTTGAGGTGATTTTGAAATAG
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Protein seq | MIDTAVGEWGVEHLDVVVLRSAPRDPPLPVYAFPDHLLDDERHRSRLRSLTLGHCALPPLHRYAALERLVLQDTAASTPMSAYDAVFGGCRRLRVVHLLCCRGAGDALVIDAPRSGVEELVVDSCSFRAVELRGLPELRRLACLGDGTVPVVELSFGAVPRLTHVNLTFAAPTSPATPPHHRVLDSLLGGAPPASMSRLAVRFTGPKRWILPRPLGAALLGLRELLVADVPPTWDVSWPRLLLEAAPALESLHIHVSAPAPSPDEHLGRPIYWQPRRKFRHRRLREVRMVGFAASAPRHTRFLRYLVRVCATLERVVLVRDGRVEEDGLWGWNTVSNGDRPWRLDDWISVSAQIKHGRTWSKPHVEVILK |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
Os04g0376200 | Os04t0376200-00 | Chr04 | 18379186 | 18380298 | + | irgsp1_rep | ||
CDS seq | ATGATCGACACCGCCGTCGGGGAGTGGGGCGTCGAGCACCTCGACGTCGTCGTCCTCAGGTCCGCGCCGCGCGACCCCCCGCTGCCGGTGTACGCCTTCCCGGACCACCTCCTCGACGACGAGCGCCACCGCTCGCGCCTCCGCAGCCTGACGCTGGGCCACTGCGCGCTGCCGCCACTGCACCGGTACGCCGCGCTGGAGCGGCTCGTCCTGCAGGACACGGCGGCGTCCACCCCGATGTCCGCGTACGACGCCGTGTTCGGTGGGTGCCGCCGCCTGCGGGTGGTGCACCTCCTGTGCTGCCGCGGCGCGGGCGACGCCCTGGTAATCGACGCGCCGCGCTCCGGCGTGGAGGAGCTCGTCGTGGACAGCTGCTCGTTCCGGGCTGTCGAGCTGCGCGGCCTCCCCGAGCTCCGCCGCCTCGCGTGCCTCGGCGACGGCACCGTGCCGGTGGTGGAGCTCAGCTTCGGCGCCGTCCCGCGCCTCACGCACGTCAACCTCACGTTCGCCGCCCCCACGTCCCCGGCGACGCCGCCCCACCACCGCGTCCTCGACTCCCTCCTCGGGGGCGCGCCGCCGGCGTCGATGTCGAGGCTCGCCGTCCGCTTCACCGGGCCGAAGCGGTGGATCCTCCCGCGCCCGCTCGGCGCCGCGCTGCTCGGCCTGAGGGAGCTCCTCGTCGCCGACGTGCCGCCCACCTGGGACGTCTCGTGGCCGCGCCTCCTCCTCGAGGCGGCGCCGGCGCTCGAGTCGCTGCACATCCACGTCTCCGCGCCCGCCCCCTCGCCGGACGAACACCTGGGGCGGCCGATCTACTGGCAGCCGCGGCGCAAGTTCCGGCACCGGCGGCTGAGGGAGGTGCGCATGGTGGGGTTCGCGGCGAGCGCGCCGCGGCATACGCGGTTCCTGAGGTACCTGGTGCGGGTGTGCGCGACATTGGAGCGCGTGGTGCTCGTCCGGGACGGGCGCGTCGAGGAAGACGGGCTCTGGGGGTGGAACACGGTGAGCAATGGCGATCGGCCGTGGAGGCTGGACGATTGGATCTCGGTCAGTGCGCAGATTAAGCATGGTAGAACTTGGTCGAAGCCTCATGTTGAGGTGATTTTGAAATAG
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Protein seq | MIDTAVGEWGVEHLDVVVLRSAPRDPPLPVYAFPDHLLDDERHRSRLRSLTLGHCALPPLHRYAALERLVLQDTAASTPMSAYDAVFGGCRRLRVVHLLCCRGAGDALVIDAPRSGVEELVVDSCSFRAVELRGLPELRRLACLGDGTVPVVELSFGAVPRLTHVNLTFAAPTSPATPPHHRVLDSLLGGAPPASMSRLAVRFTGPKRWILPRPLGAALLGLRELLVADVPPTWDVSWPRLLLEAAPALESLHIHVSAPAPSPDEHLGRPIYWQPRRKFRHRRLREVRMVGFAASAPRHTRFLRYLVRVCATLERVVLVRDGRVEEDGLWGWNTVSNGDRPWRLDDWISVSAQIKHGRTWSKPHVEVILK
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | None | None | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0376200 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30750 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010380 | RBH | 0.105458 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011150 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010830 | RBH | 0.525120 | 0.0 | 0.412778 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010540 | RBH | 0.091958 | 0.038031 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010780 | RBH | 0.652640 | 0.0 | 0.695625 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0289600 | RBH | 0.519474 | 0.0071345 | 0.01709 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009680 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0290000 | RBH | 0.0247315 | 0.2712195 | 0.3846485 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010410 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009870 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009920 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010420 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010630 | RBH | 0.088043 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009850 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009890 | RBH | 0.222277 | 0.0 | 0.0 |