Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g35680 | OGI:04066700 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:21745662-21747557 | ||||||||
| Gene Symbol | OsPUB38 | ||||||||||
| DNA seq | GCTCTTCTCTCTCTCTCTATCTCTAGCATTCTCTCTCTGATCTTGAGATAATCGGATGCAAGTGCAACTCCTGTTGTGTGTTCTTGGTCATCGTCTTCATCGAGTACAAACCCACATGGTCCAGGCAGCCAAGCAGTACGTGCAGTAACTTTGCAGCAGTCGTTTCACCAGTTACATTCTCATCAGTAGTGCATCGCCATGGATTCCCTGATGTGATTGGCATGGGAGTGAGTGCTCGAACAAGCTGAAAAATCTCTCCTTCACTGCACATTGCAGCTGCTGCTGGTCTCTTTGAGGAGCTCTTGATTCGGTATGATTTGATGTGTATTTTAGCTTCTCGATGATCTGTTCTATCGATGCGCTTTGAGTTGTGATTGTTTAAATGTTTGTGTTTGTGTTTCTTGCAGATTCGGAGGTTTAATTTCTTGTGAGTTTCTTGATGGATTTGTGTTGATTGATCGATTGTTTTTTGGGTGGAGATTGGATTGGAGAAGAGATGAGCATTCCGCACCTGTTCAGGTGCCCGATCAGCCTGGACATCTTCACCGACCCGGTGACGCTGTGCACGGGGCAGACGTACGACCGGCCGTGCATCGAGCGGTGGCTCGCCGCCGGCCACCGCACCTGCCCCGTCACAATGCAGCCGCTCGGCGACGCCACCGCGCTCGTGCCCAACCGCACGCTGCGCCACCTCATCGAGCGCTGGCTGTCCACCGACCAACACCACAACCACCACCTCCCCGAGCCGGCGGCGCCGGCGGCGGAGGCCGAGGCCGACGCGGAGGAGCCGTCGCTCGCGGCGCTCAAGCGTTGCCTGCAGCAGCCGGACGCCGCCGGCGCCGGTAAGGCGAAGGTTGGCGCGCTCAAGAAGGTGATGACGCTGGCGTCCGAGTCGGACGTCGGCCGCGCGTGCATGGTCCAGCTGGGCTTCCTGCCCGTGCTGCTGCAGCTCGTGTTCCACGCGCCGGCGGCGCCGCCGTCGGAGCGACGCGGCGGCGAGGCGGCGGTGGTGGAGGAGCTCGCGCTGCAATGCGCGCTCGGCCTCATGCCGTCGAGCGCCGCCTCGCCGCAGCTCGGCTGCCTGAACGTGCTCAAGAGCGAGGCCAGCCTGGCGTCGCTCGTCGCCCTGCTGGAGCGCGGGCGGGGGCGGACGAGGGCGGGGCTGTGCCGCCTCCTCGAGGCCGTCGCCACGGCCGCCGCGACGAGGGAGCTGGCGCTCGTCGTGGCCGCCTCGCCGCGGGTGTGGCAGGCGCTCCTCCCGCTCCTGCGGCACGACGGCCCTGCGCCCACGCCCGCGCCGCCGCACGACGCGCACGCGGCGTCGGACGCCGCCGTGCGCGCCGTGGCGGCGATCTGCGCGTCCGAGCCGGCGCGGGGCGGCGCCATCCACCACGGCGCGGTCGGCGCGCTCCTCGGGCACCTCTCGTGGGCGGCGTCGGGGAAGTGCGCCTCCGGCGGCTGCGCCGGCGCCGTGCCGAGCGCGCTGGCGGCGGTGGAGGCGCTGGCGGCGTCGGAGGCCGGGCGCATGGCGGTGGCGCGCGCCCCCGGCGGGACGCGGGCGCTGGTGAGGCACGTGTTCATGATGAACTCGAGCAACGACGGCAGCGAGCACGCGGTGGCGGCGCTGCTGGCCGTGTGCAGGGAGTCGCGGGCGGCGCGGAGCGAGGCGGCCGGCGCCGGCGTGGTGACGCTGCTGCTGCTGCTGCTGCAGAGCCAGTGCGGCGCCAGGGCGAAGGCCAAGGCCAGGTCTCTGCTCAAGCTGCTCAAATCCATGTGAAAATGATGATGAATCTTTTCTTCTAGAATTATTGTAGACGCCATTGCCGGAGTTTAAGGTGGTAGATGATGATGTTCTTGTAAGCTGTAAGTTTGTGCGTCAAGAATGTCTTTGATGGC
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| CDS seq | ATGAGCATTCCGCACCTGTTCAGGTGCCCGATCAGCCTGGACATCTTCACCGACCCGGTGACGCTGTGCACGGGGCAGACGTACGACCGGCCGTGCATCGAGCGGTGGCTCGCCGCCGGCCACCGCACCTGCCCCGTCACAATGCAGCCGCTCGGCGACGCCACCGCGCTCGTGCCCAACCGCACGCTGCGCCACCTCATCGAGCGCTGGCTGTCCACCGACCAACACCACAACCACCACCTCCCCGAGCCGGCGGCGCCGGCGGCGGAGGCCGAGGCCGACGCGGAGGAGCCGTCGCTCGCGGCGCTCAAGCGTTGCCTGCAGCAGCCGGACGCCGCCGGCGCCGGTAAGGCGAAGGTTGGCGCGCTCAAGAAGGTGATGACGCTGGCGTCCGAGTCGGACGTCGGCCGCGCGTGCATGGTCCAGCTGGGCTTCCTGCCCGTGCTGCTGCAGCTCGTGTTCCACGCGCCGGCGGCGCCGCCGTCGGAGCGACGCGGCGGCGAGGCGGCGGTGGTGGAGGAGCTCGCGCTGCAATGCGCGCTCGGCCTCATGCCGTCGAGCGCCGCCTCGCCGCAGCTCGGCTGCCTGAACGTGCTCAAGAGCGAGGCCAGCCTGGCGTCGCTCGTCGCCCTGCTGGAGCGCGGGCGGGGGCGGACGAGGGCGGGGCTGTGCCGCCTCCTCGAGGCCGTCGCCACGGCCGCCGCGACGAGGGAGCTGGCGCTCGTCGTGGCCGCCTCGCCGCGGGTGTGGCAGGCGCTCCTCCCGCTCCTGCGGCACGACGGCCCTGCGCCCACGCCCGCGCCGCCGCACGACGCGCACGCGGCGTCGGACGCCGCCGTGCGCGCCGTGGCGGCGATCTGCGCGTCCGAGCCGGCGCGGGGCGGCGCCATCCACCACGGCGCGGTCGGCGCGCTCCTCGGGCACCTCTCGTGGGCGGCGTCGGGGAAGTGCGCCTCCGGCGGCTGCGCCGGCGCCGTGCCGAGCGCGCTGGCGGCGGTGGAGGCGCTGGCGGCGTCGGAGGCCGGGCGCATGGCGGTGGCGCGCGCCCCCGGCGGGACGCGGGCGCTGGTGAGGCACGTGTTCATGATGAACTCGAGCAACGACGGCAGCGAGCACGCGGTGGCGGCGCTGCTGGCCGTGTGCAGGGAGTCGCGGGCGGCGCGGAGCGAGGCGGCCGGCGCCGGCGTGGTGACGCTGCTGCTGCTGCTGCTGCAGAGCCAGTGCGGCGCCAGGGCGAAGGCCAAGGCCAGGTCTCTGCTCAAGCTGCTCAAATCCATGTGA
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| Protein seq | MSIPHLFRCPISLDIFTDPVTLCTGQTYDRPCIERWLAAGHRTCPVTMQPLGDATALVPNRTLRHLIERWLSTDQHHNHHLPEPAAPAAEAEADAEEPSLAALKRCLQQPDAAGAGKAKVGALKKVMTLASESDVGRACMVQLGFLPVLLQLVFHAPAAPPSERRGGEAAVVEELALQCALGLMPSSAASPQLGCLNVLKSEASLASLVALLERGRGRTRAGLCRLLEAVATAAATRELALVVAASPRVWQALLPLLRHDGPAPTPAPPHDAHAASDAAVRAVAAICASEPARGGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAVAALLAVCRESRAARSEAAGAGVVTLLLLLLQSQCGARAKAKARSLLKLLKSM |
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| Function | U-box domain-containing protein 25 [UniProtKB/Swiss-Prot:Q9LT79] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g35680 | LOC_Os04g35680.1 | Chr04 | 21745662 | 21747557 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGCATTCCGCACCTGTTCAGGTGCCCGATCAGCCTGGACATCTTCACCGACCCGGTGACGCTGTGCACGGGGCAGACGTACGACCGGCCGTGCATCGAGCGGTGGCTCGCCGCCGGCCACCGCACCTGCCCCGTCACAATGCAGCCGCTCGGCGACGCCACCGCGCTCGTGCCCAACCGCACGCTGCGCCACCTCATCGAGCGCTGGCTGTCCACCGACCAACACCACAACCACCACCTCCCCGAGCCGGCGGCGCCGGCGGCGGAGGCCGAGGCCGACGCGGAGGAGCCGTCGCTCGCGGCGCTCAAGCGTTGCCTGCAGCAGCCGGACGCCGCCGGCGCCGGTAAGGCGAAGGTTGGCGCGCTCAAGAAGGTGATGACGCTGGCGTCCGAGTCGGACGTCGGCCGCGCGTGCATGGTCCAGCTGGGCTTCCTGCCCGTGCTGCTGCAGCTCGTGTTCCACGCGCCGGCGGCGCCGCCGTCGGAGCGACGCGGCGGCGAGGCGGCGGTGGTGGAGGAGCTCGCGCTGCAATGCGCGCTCGGCCTCATGCCGTCGAGCGCCGCCTCGCCGCAGCTCGGCTGCCTGAACGTGCTCAAGAGCGAGGCCAGCCTGGCGTCGCTCGTCGCCCTGCTGGAGCGCGGGCGGGGGCGGACGAGGGCGGGGCTGTGCCGCCTCCTCGAGGCCGTCGCCACGGCCGCCGCGACGAGGGAGCTGGCGCTCGTCGTGGCCGCCTCGCCGCGGGTGTGGCAGGCGCTCCTCCCGCTCCTGCGGCACGACGGCCCTGCGCCCACGCCCGCGCCGCCGCACGACGCGCACGCGGCGTCGGACGCCGCCGTGCGCGCCGTGGCGGCGATCTGCGCGTCCGAGCCGGCGCGGGGCGGCGCCATCCACCACGGCGCGGTCGGCGCGCTCCTCGGGCACCTCTCGTGGGCGGCGTCGGGGAAGTGCGCCTCCGGCGGCTGCGCCGGCGCCGTGCCGAGCGCGCTGGCGGCGGTGGAGGCGCTGGCGGCGTCGGAGGCCGGGCGCATGGCGGTGGCGCGCGCCCCCGGCGGGACGCGGGCGCTGGTGAGGCACGTGTTCATGATGAACTCGAGCAACGACGGCAGCGAGCACGCGGTGGCGGCGCTGCTGGCCGTGTGCAGGGAGTCGCGGGCGGCGCGGAGCGAGGCGGCCGGCGCCGGCGTGGTGACGCTGCTGCTGCTGCTGCTGCAGAGCCAGTGCGGCGCCAGGGCGAAGGCCAAGGCCAGGTCTCTGCTCAAGCTGCTCAAATCCATGTGA
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| Protein seq | MSIPHLFRCPISLDIFTDPVTLCTGQTYDRPCIERWLAAGHRTCPVTMQPLGDATALVPNRTLRHLIERWLSTDQHHNHHLPEPAAPAAEAEADAEEPSLAALKRCLQQPDAAGAGKAKVGALKKVMTLASESDVGRACMVQLGFLPVLLQLVFHAPAAPPSERRGGEAAVVEELALQCALGLMPSSAASPQLGCLNVLKSEASLASLVALLERGRGRTRAGLCRLLEAVATAAATRELALVVAASPRVWQALLPLLRHDGPAPTPAPPHDAHAASDAAVRAVAAICASEPARGGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAVAALLAVCRESRAARSEAAGAGVVTLLLLLLQSQCGARAKAKARSLLKLLKSM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.093607 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0437300 | RBH | 0.000000 | 0.139175 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34410 | RBH | 0.0 | 0.0 | 0.104813 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0437300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014060 | RBH | 0.086758 | 1.894520 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014650 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014240 | RBH | 0.000000 | 0.030326 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014560 | RBH | 0.000000 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0340000 | RBH | 0.5781285 | 2.0028485 | 0.092208 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013480 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0336700 | RBH | 0.6481185 | 2.391036 | 1.414597 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014020 | RBH | 0.050887 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014390 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014590 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013650 | RBH | 0.0 | 0.452068 | 0.397906 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013670 | RBH | 0.000000 | 0.000000 | 0.403210 |
