Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g34410 | OGI:02059430 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:20588271-20589687 | ||||||||
| Gene Symbol | PUB43, OsPUB43 | ||||||||||
| DNA seq | AGCTTTTCTTTTTTTTTTCTCCGTCGTCGATGCTTGGTTGCTACTACCGCCGCCGCTGCCGCCGGCCGCAATGGCGGTTGTTAGTATGGTTGGAGGAAGTCGTCGGAGTTGGCGATGGAGTCGGCGGCGGGCCACGCCGACCGGAGCAGCTTGAGCAGGTGCTGCGCCTTCCGCTTCGCCCGCTCCGAGCACCCGCCCTGCACCATGAGGAGGAGCTGGCTCATGGCGCCCGCGCGGACCGCCTCCACCTGGAGCGGCTCCGATCCGCCCACCACCGCCACCAGCGCCCCCGCCGCGTGCTCCGCTGACCGCCCGGACATGGCGCGCACCAGCGCGCACACCGCCGCCGCGCCTCCCCCGGCGCCCGCGACCACCGCGTCGCGCCCGCCCTCCGTCCGGCACAGCCGCTCCACCGCGGCCAGCGCGCGCTCCGGCTCCCCCGCGCCACCGCCTCCCTCCGCGACGCGACGCGCGAGCGCCGCCGCGGCACCGGCGGCGACGGCGCGGGGGCGGTTCTCCTTGGCGAGGCAGAGCGCGAACAGTCCACGGATCCCGACGCGGACGGCGCGCGCGTGGGCCTTCTCCTCGACCAGCGCGACGAGCCCCTCCATGACCCCCTCCGCCGCGCCCAGCACCGCCCTGGCGTCCGCGCCGGACACCGCCGCAACCGCCTCCACCACAGCCCCAGCATTAACCCTGCACTCCAGCGTCGCCGTCGTCGTCGCCGCCCCTTCCCCACTCACCAGCAGCTCCCCGAGCCTCGCCACCCTCTCCCTCCTCCCCACCACCTCCACAGCCTCAGCCTCACCCAACCCAACCATAGCAAGAACCGCCATCGCCTCGGCCTCGACCTCCTCCCCACCAGCGTTCGTCCCAAACGCCATGTCAACGAGCGCCGCCCGTGTCTCGTGGGTGGCCATGACGAGGCGGTTCTTGTCGGAGTCCCGGGCGAGCGCCCTGAGCTTGCGGAGCGGCGGGAGCGCGGGGCACTGGGCGAGGAGGGAGCGGATGAGGTCGGGGTCGGCTGGCTGCTTCGGGGTGGGGATGCGCTCGACGCCGAGGGAGCGGTGGGCGACGCACCAGTCCTGGATGAGGCGGCGGAGGGTGTGGTTGGGGATGAGGGTGAAGGCGCGGTCGAGCGGGGAGCGGGTGACGGGGCAGGTGGTGTTGCCGGTGGCCACCCACGACTCGATGCTGGCGCGGTCGTAGGTCTGGCCGGTGGACACCGTCACCGGGTCGCGCATCAGCTCCAGGGAGATGGGGCACCGGAAGTACCAGGGCACCTGCACCCCCGCCGTGTCCAGGCCCAGCGCCAGCGGCACGCTCCCCGGCATCCGATTCTCAGCTCAGCTTCGCGGAATCGCGGCGTGGGGTGGGTTGGTGGGTGGGTGGAGAGGAGGAGGAGGTGAGGAGTGGG
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| CDS seq | ATGCCGGGGAGCGTGCCGCTGGCGCTGGGCCTGGACACGGCGGGGGTGCAGGTGCCCTGGTACTTCCGGTGCCCCATCTCCCTGGAGCTGATGCGCGACCCGGTGACGGTGTCCACCGGCCAGACCTACGACCGCGCCAGCATCGAGTCGTGGGTGGCCACCGGCAACACCACCTGCCCCGTCACCCGCTCCCCGCTCGACCGCGCCTTCACCCTCATCCCCAACCACACCCTCCGCCGCCTCATCCAGGACTGGTGCGTCGCCCACCGCTCCCTCGGCGTCGAGCGCATCCCCACCCCGAAGCAGCCAGCCGACCCCGACCTCATCCGCTCCCTCCTCGCCCAGTGCCCCGCGCTCCCGCCGCTCCGCAAGCTCAGGGCGCTCGCCCGGGACTCCGACAAGAACCGCCTCGTCATGGCCACCCACGAGACACGGGCGGCGCTCGTTGACATGGCGTTTGGGACGAACGCTGGTGGGGAGGAGGTCGAGGCCGAGGCGATGGCGGTTCTTGCTATGGTTGGGTTGGGTGAGGCTGAGGCTGTGGAGGTGGTGGGGAGGAGGGAGAGGGTGGCGAGGCTCGGGGAGCTGCTGGTGAGTGGGGAAGGGGCGGCGACGACGACGGCGACGCTGGAGTGCAGGGTTAATGCTGGGGCTGTGGTGGAGGCGGTTGCGGCGGTGTCCGGCGCGGACGCCAGGGCGGTGCTGGGCGCGGCGGAGGGGGTCATGGAGGGGCTCGTCGCGCTGGTCGAGGAGAAGGCCCACGCGCGCGCCGTCCGCGTCGGGATCCGTGGACTGTTCGCGCTCTGCCTCGCCAAGGAGAACCGCCCCCGCGCCGTCGCCGCCGGTGCCGCGGCGGCGCTCGCGCGTCGCGTCGCGGAGGGAGGCGGTGGCGCGGGGGAGCCGGAGCGCGCGCTGGCCGCGGTGGAGCGGCTGTGCCGGACGGAGGGCGGGCGCGACGCGGTGGTCGCGGGCGCCGGGGGAGGCGCGGCGGCGGTGTGCGCGCTGGTGCGCGCCATGTCCGGGCGGTCAGCGGAGCACGCGGCGGGGGCGCTGGTGGCGGTGGTGGGCGGATCGGAGCCGCTCCAGGTGGAGGCGGTCCGCGCGGGCGCCATGAGCCAGCTCCTCCTCATGGTGCAGGGCGGGTGCTCGGAGCGGGCGAAGCGGAAGGCGCAGCACCTGCTCAAGCTGCTCCGGTCGGCGTGGCCCGCCGCCGACTCCATCGCCAACTCCGACGACTTCCTCCAACCATACTAA
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| Protein seq | MPGSVPLALGLDTAGVQVPWYFRCPISLELMRDPVTVSTGQTYDRASIESWVATGNTTCPVTRSPLDRAFTLIPNHTLRRLIQDWCVAHRSLGVERIPTPKQPADPDLIRSLLAQCPALPPLRKLRALARDSDKNRLVMATHETRAALVDMAFGTNAGGEEVEAEAMAVLAMVGLGEAEAVEVVGRRERVARLGELLVSGEGAATTTATLECRVNAGAVVEAVAAVSGADARAVLGAAEGVMEGLVALVEEKAHARAVRVGIRGLFALCLAKENRPRAVAAGAAAALARRVAEGGGGAGEPERALAAVERLCRTEGGRDAVVAGAGGGAAAVCALVRAMSGRSAEHAAGALVAVVGGSEPLQVEAVRAGAMSQLLLMVQGGCSERAKRKAQHLLKLLRSAWPAADSIANSDDFLQPY |
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| Function | U-box domain-containing protein 25 [UniProtKB/Swiss-Prot:Q9LT79] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g34410 | LOC_Os02g34410.1 | Chr02 | 20588271 | 20589687 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCGGGGAGCGTGCCGCTGGCGCTGGGCCTGGACACGGCGGGGGTGCAGGTGCCCTGGTACTTCCGGTGCCCCATCTCCCTGGAGCTGATGCGCGACCCGGTGACGGTGTCCACCGGCCAGACCTACGACCGCGCCAGCATCGAGTCGTGGGTGGCCACCGGCAACACCACCTGCCCCGTCACCCGCTCCCCGCTCGACCGCGCCTTCACCCTCATCCCCAACCACACCCTCCGCCGCCTCATCCAGGACTGGTGCGTCGCCCACCGCTCCCTCGGCGTCGAGCGCATCCCCACCCCGAAGCAGCCAGCCGACCCCGACCTCATCCGCTCCCTCCTCGCCCAGTGCCCCGCGCTCCCGCCGCTCCGCAAGCTCAGGGCGCTCGCCCGGGACTCCGACAAGAACCGCCTCGTCATGGCCACCCACGAGACACGGGCGGCGCTCGTTGACATGGCGTTTGGGACGAACGCTGGTGGGGAGGAGGTCGAGGCCGAGGCGATGGCGGTTCTTGCTATGGTTGGGTTGGGTGAGGCTGAGGCTGTGGAGGTGGTGGGGAGGAGGGAGAGGGTGGCGAGGCTCGGGGAGCTGCTGGTGAGTGGGGAAGGGGCGGCGACGACGACGGCGACGCTGGAGTGCAGGGTTAATGCTGGGGCTGTGGTGGAGGCGGTTGCGGCGGTGTCCGGCGCGGACGCCAGGGCGGTGCTGGGCGCGGCGGAGGGGGTCATGGAGGGGCTCGTCGCGCTGGTCGAGGAGAAGGCCCACGCGCGCGCCGTCCGCGTCGGGATCCGTGGACTGTTCGCGCTCTGCCTCGCCAAGGAGAACCGCCCCCGCGCCGTCGCCGCCGGTGCCGCGGCGGCGCTCGCGCGTCGCGTCGCGGAGGGAGGCGGTGGCGCGGGGGAGCCGGAGCGCGCGCTGGCCGCGGTGGAGCGGCTGTGCCGGACGGAGGGCGGGCGCGACGCGGTGGTCGCGGGCGCCGGGGGAGGCGCGGCGGCGGTGTGCGCGCTGGTGCGCGCCATGTCCGGGCGGTCAGCGGAGCACGCGGCGGGGGCGCTGGTGGCGGTGGTGGGCGGATCGGAGCCGCTCCAGGTGGAGGCGGTCCGCGCGGGCGCCATGAGCCAGCTCCTCCTCATGGTGCAGGGCGGGTGCTCGGAGCGGGCGAAGCGGAAGGCGCAGCACCTGCTCAAGCTGCTCCGGTCGGCGTGGCCCGCCGCCGACTCCATCGCCAACTCCGACGACTTCCTCCAACCATACTAA
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| Protein seq | MPGSVPLALGLDTAGVQVPWYFRCPISLELMRDPVTVSTGQTYDRASIESWVATGNTTCPVTRSPLDRAFTLIPNHTLRRLIQDWCVAHRSLGVERIPTPKQPADPDLIRSLLAQCPALPPLRKLRALARDSDKNRLVMATHETRAALVDMAFGTNAGGEEVEAEAMAVLAMVGLGEAEAVEVVGRRERVARLGELLVSGEGAATTTATLECRVNAGAVVEAVAAVSGADARAVLGAAEGVMEGLVALVEEKAHARAVRVGIRGLFALCLAKENRPRAVAAGAAAALARRVAEGGGGAGEPERALAAVERLCRTEGGRDAVVAGAGGGAAAVCALVRAMSGRSAEHAAGALVAVVGGSEPLQVEAVRAGAMSQLLLMVQGGCSERAKRKAQHLLKLLRSAWPAADSIANSDDFLQPY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.104813 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0548700 | RBH | 0.0 | 0.0 | 0.371448 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35680 | RBH | 0.000000 | 0.093607 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0548700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020670 | RBH | 0.0 | 4.497322 | 1.952378 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020760 | RBH | 0.0 | 0.0 | 0.342924 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020740 | RBH | 0.0 | 5.466345 | 1.080611 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020490 | RBH | 0.0 | 0.206130 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020410 | RBH | 1.563356 | 10.296676 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0339900 | RBH | 1.804839 | 76.627037 | 14.821352 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020120 | RBH | 0.0 | 0.590307 | 0.181003 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0364800 | RBH | 3.337692 | 93.2658195 | 4.9447275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020620 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020360 | RBH | 0.0 | 5.140136 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020790 | RBH | 0.0 | 4.722701 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020490 | RBH | 0.0 | 1.862997 | 0.172184 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020310 | RBH | 0.0 | 10.392074 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020760 | RBH | 0.0 | 2.279883 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020500 | RBH | 0.0 | 0.0 | 1.160535 |
