Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g31570 | OGI:04059920 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:18875322-18876537 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATATCTGAGAACCCCATTGCCACATGACAGGGATTCGGTGACCACAACCCGCATAGGCGCATAGTGCTATCAGGGGGTGGAAGAGGAGAGAAGGAGCTCCGCCGCAGTCGTTCTTGCTGCTGCCCGCCTTTCCGGCGAGCTGCTCAAGCGGGGGTGAGCGCGGACGAAGAGGGCCGGAGGGGGATGGAGCAGCGGCGGCGGTTTTTGAGCCTGTGGATCAGACCCCTAATGATTCATAAATCCATCACATTGACTTGATTGTCTTAATAATTACGAAATCTAATTGAGACTAGACTCTCCACATATGGAACATAGTAATGCTGACTATACAAATCATAGCCTAGCTTATATTTGCTCCCATCCGACCGCGCGTATTCCACCTCTGCCGTGTCGACCACCTTCTCCAGAACCCTACTCCTCTCACCATACAGATACAAGTTCTCATCCACCGACAGCAAGATGTGCTCCCCGCCGGCCACCAGCGGGGAGACGCAGCTCACGTAGTCGCCGACATCGATGCAGCAGCGCATGGACCACTCCGGCCGTGCCATGTCGCCGCCGCCGTCCAGCATGCATCCAGAGACGGGAGGTCGTCTTCGTCGTCTCCGTGGCTGTGTGGGTGTAGAACAGCTTACCGTCCAGCTCCGACACGGTGTTGAATGCGAAGACGTCGGATGAGCAGCCCGGATGGCATGGAACCATGTCGAACTTGTGGCTGCGAAGGCTAAACCGGAGCAACATGCTCGGGTTGCCGACGTCCTCGTTGGTGCACCAGTAGAAGCACCCTCCGATGCAAGCCGGCGGAGTGCTGGGCACGACGGCGCTGGTTGGTGGTGGATCCTCGGTGGCCTCCCATGAGCCGGCGCCGCCGCCGCCGAGAACGAAGATCTCATGCCCGATTTCGGCGACGCCGGCCCTGTTTGGGTAGCGCCGGTGGAAGTACCTACAGACGACGTACCGGTTGCGCGGCGCCACGGATCATAGCCGATGGCCGCGAACCGATCCCAGACGACGCAGCCGTTGTGGCAGCTGATGCCGAGCGGCAGCGTGACGAGCTCCTTGGTGGCTGGGTTGCAGACGAATGTCTCGCCGGCGTCCGTCGTGACGGCGATGAGGCCGTCGCAGTGCGTGGCGACGTCTATCTCGACCCCATCCGGGAACGCCCTCTCGAGCATCAGCTCAACCTCGCTGCTGCTACTGCTGCTGTCGTCCAT
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| CDS seq | ATGGACGACAGCAGCAGTAGCAGCAGCGAGGTTGAGCTGATGCTCGAGAGGGCGTTCCCGGATGGGGTCGAGATAGACGTCGCCACGCACTGCGACGGCCTCATCGCCGTCACGACGGACGCCGGCGAGACATTCGTCTGCAACCCAGCCACCAAGGAGCTCGTCACGCTGCCGCTCGGCATCAGCTGCCACAACGGCTGCGTCGTCTGGGATCGGTTCGCGGCCATCGGCTATGATCCGTGGCGCCGCGCAACCGGTACGTCGTCTGCCGGCGTCGCCGAAATCGGGCATGAGATCTTCGTTCTCGGCGGCGGCGGCGCCGGCTCATGGGAGGCCACCGAGGATCCACCACCAACCAGCGCCGTCGTGCCCAGCACTCCGCCGGCTTGCATCGGAGGGTGCTTCTACTGGTGCACCAACGAGGACGTCGGCAACCCGAGCATGTTGCTCCGGTTTAGCCTTCGCAGCCACAAGTTCGACATGGTTCCATGCCATCCGGGCTGCTCATCCGACGTCTTCGCATTCAACACCGTGTCGGAGCTGGACGGCTCAAAAACCGCCGCCGCTGCTCCATCCCCCTCCGGCCCTCTTCGTCCGCGCTCACCCCCGCTTGAGCAGCTCGCCGGAAAGGCGGGCAGCAGCAAGAACGACTGCGGCGGAGCTCCTTCTCTCCTCTTCCACCCCCTGATAGCACTATGCGCCTATGCGGGTTGTGGTCACCGAATCCCTGTCATGTGGCAATGGGGTTCTCAGATATAG
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| Protein seq | MDDSSSSSSEVELMLERAFPDGVEIDVATHCDGLIAVTTDAGETFVCNPATKELVTLPLGISCHNGCVVWDRFAAIGYDPWRRATGTSSAGVAEIGHEIFVLGGGGAGSWEATEDPPPTSAVVPSTPPACIGGCFYWCTNEDVGNPSMLLRFSLRSHKFDMVPCHPGCSSDVFAFNTVSELDGSKTAAAAPSPSGPLRPRSPPLEQLAGKAGSSKNDCGGAPSLLFHPLIALCAYAGCGHRIPVMWQWGSQI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g31570 | LOC_Os04g31570.1 | Chr04 | 18875322 | 18876537 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACGACAGCAGCAGTAGCAGCAGCGAGGTTGAGCTGATGCTCGAGAGGGCGTTCCCGGATGGGGTCGAGATAGACGTCGCCACGCACTGCGACGGCCTCATCGCCGTCACGACGGACGCCGGCGAGACATTCGTCTGCAACCCAGCCACCAAGGAGCTCGTCACGCTGCCGCTCGGCATCAGCTGCCACAACGGCTGCGTCGTCTGGGATCGGTTCGCGGCCATCGGCTATGATCCGTGGCGCCGCGCAACCGGTACGTCGTCTGCCGGCGTCGCCGAAATCGGGCATGAGATCTTCGTTCTCGGCGGCGGCGGCGCCGGCTCATGGGAGGCCACCGAGGATCCACCACCAACCAGCGCCGTCGTGCCCAGCACTCCGCCGGCTTGCATCGGAGGGTGCTTCTACTGGTGCACCAACGAGGACGTCGGCAACCCGAGCATGTTGCTCCGGTTTAGCCTTCGCAGCCACAAGTTCGACATGGTTCCATGCCATCCGGGCTGCTCATCCGACGTCTTCGCATTCAACACCGTGTCGGAGCTGGACGGCTCAAAAACCGCCGCCGCTGCTCCATCCCCCTCCGGCCCTCTTCGTCCGCGCTCACCCCCGCTTGAGCAGCTCGCCGGAAAGGCGGGCAGCAGCAAGAACGACTGCGGCGGAGCTCCTTCTCTCCTCTTCCACCCCCTGATAGCACTATGCGCCTATGCGGGTTGTGGTCACCGAATCCCTGTCATGTGGCAATGGGGTTCTCAGATATAG
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| Protein seq | MDDSSSSSSEVELMLERAFPDGVEIDVATHCDGLIAVTTDAGETFVCNPATKELVTLPLGISCHNGCVVWDRFAAIGYDPWRRATGTSSAGVAEIGHEIFVLGGGGAGSWEATEDPPPTSAVVPSTPPACIGGCFYWCTNEDVGNPSMLLRFSLRSHKFDMVPCHPGCSSDVFAFNTVSELDGSKTAAAAPSPSGPLRPRSPPLEQLAGKAGSSKNDCGGAPSLLFHPLIALCAYAGCGHRIPVMWQWGSQI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g30570 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010990 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011770 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011480 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011140 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011380 | RBH | 0.0 | 0.0 | 1.330160 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0300200 | RBH | 0.014406 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010320 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0297700 | RBH | 0.0150015 | 0 | 0.024144 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010960 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010550 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010600 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011090 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011250 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010470 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010540 | RBH | 0.0 | 0.0 | 0.0 |
