Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g30570 | OGI:02052880 | 12/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:18187498-18190634 | ||||||||
| Gene Symbol | OsFbox088, OsFbox88, Os_F0475 | ||||||||||
| DNA seq | ATGGCGGCGCCGCCGCTAGACATCACCGCCGAGATTGATCCGATGCTCCACAAGTCTATCCCTAAGGGCGGCCGTATCACCCGCCATATCATCCCCACCCACTGCGACGGCCTTGTCGCCTTTGCCACCTATGGCAGGGCCATGTTCGTGTGCAACCCGGCCACCCAGGAGCTCGTCGTGCTACCGCCCGGCAGCGGCAGCGGCCCATGCCCACAGTCTACAGAATCAACGGCAGCGGTCGGCTTCAACCTGTGGTGGAACAGGTACATCGTTGTCAGGTGCTTCTACCGCAAGTCCCACAACGATCTGCCGGTCTACGACATCGGACACGAGATCTTCACGCTCGGCGCAGGCGCTGGCGATGGATGGCAGCGCATGCAAGACCCGTCGCGTGCCATCAGTCTTGGCGGGAGGAGACCCGCTGCCTGCACGCGTGGGGGTTCCATCTACAGGTTCATCAACGAGTCTCAGCCATGCGCGCTGCTGTGGTTCAGCCTGCGAGACGAGGCGTTCGACGCGGTCCCATCCTCTCCGGGCTGCACGGCCTGCGACAACGACGACCGTCTCGCGGACCTCGCCGGCGAGCTGTGCTACGTGCATCGCATCCGCACGAGCGTGGCCACCCACGAAGTTTGGATGGCGGCGGCGGTTGATGACGATGACCAAGAGTGGTGGTTGCGATACCGAGTGGACCTGTGGCACAACCCGTGGGGCGTGCGCCGCCGCTGTGGCGGCGGCGGCAACGGCCAACGCTGGTTCCACAGCTTCGGCGCCACGGCGGCCGGCGACGTTGGTGGCCATGTTGTACAAGGAGCTGTGGTGTCACAGGGAGCAGAGCAAACCGGTGGTGAAAGACGTGAACGTGTAGGGGAGCCGGTACAGCTGTGAGTCGGCTCATCATGAAAATAACTTACACACGTTGACATGTTTAGTCAGTGTTTGTTGCTGCTTCAGACATATGCAGAGGGAAAATGTCAGTGTCCGGAAGAAAAATGGCATAGAGAAAGGCATGGGGGTAGGGGGTTTATTTTTACAAATTCAAAATAAATTTGATCAAACAAGAAATCTTTAAGTACATACATAACCTCAAATTGATATGGTAAGCTCGCCAACATGTGAAAAGATAACCAATGAGGATTGATATGGGACTTACTATCAACATCTTCAGGAATGATTTATTCCGATAAGATTACATTACTAACATAGGTTTTTTTTTATGATTTATGTTACCACATACTAACCCTCATGATTGATTTAGACGATGGATGTATATGGTCAATATATGTTGACGTGCCTTGTACGTGCACGCTCATTATGTTTTACAATGGAGGAGTATCCCGTTGTAAAATGTGCATAAATATATGACAACGCGAAATATTTCGTATGTATTTATTATTTCCTTTTTGAAAAAAGAAATGGTGCTGTTGTTGAGATACGGTGCCTTAGTAACGTACTACCTCCATTTCAGGTTATAAGACTTTCAAGCATTGCTCACATTCATATAGATGTTAATGAATCTAGATACACATATATGTCTAAATTCATTAACATATATATGAACGTGGACAATGTTAGAAAGTCTTATAATATGAAACGAAGGAAGTAGTGAATATTCCGTGTTCGAGTGTCGCTCGACGCTGGTTTCGCATCGGGGATTACCATAGTCCATAGTTTCTGATGCTATGCAGGGTTCACAATTCCGATGAAAAAGTGGTCGAATTCCATGGAAAATCGAGGTTTTGACGTGGCTCGAAAGTAGAAGCTGTCTGAAATTTCAATGGGTTTCATTCAAATTCAAATTTGAATTGATAAAAAGGAAATAAAATCAAATAAAATCCTATAAATAGTATGATATTCATAGAACTTACTCCCTCTGTTACTAAATATTTGACGCCGTTGACTTTTTAAATATGTTTGACCGTTCGTCTTATTCAAAAAAATTTAAGTAATTATTAATTCTTTTCCTATCATTTGTTTTATTGTTAAATATACTTATATGTATACATATAGTTTCACATATTTCACAAAAGTTTTTGAATAAGACGAACGGTTAAACATGTGCTAAAAAGTTAATGGTGTCAAATATTTAGAAACAGAGGGAGTATTTGGCTATAAATTTTCCAATTGGTGTATTCCGTGTATTTCTTGAACTTTACAGTAAGAAAGAGAAGTGATTTAAAAAAAGGGAAAACATTTTCCTGAGACGAATTCCATGTATTAGGCCCACTTAGAGCAAGGTCAATAACACAGCCCGCTGTTGGTTCCAAAAAAATAGCCATGCCATATATAGTAAACAGTGTAGCCAATATCTACAATAGAAATACTATAACACAGATATTTTATAGATTTGTGGGACCCACCATCTTCTCCTACCTCACGTTCTCTTTCTCCCTCTATCCCCTCAGTTCCTGACACCGACGAGGGTCTCACGGCGGCGGCGGACACAGGAGATGGTGGCGGCTGCGCCACGGACGTGGTAGACATCGGCGGCGGGCGACGGGGGCAGCGGCGGCCGGGCCACTTGGCGGAGGAGGAAGATGGCAGCGGCGGTACGGTGGCCGGGCCACGCGGCGGAGGCGGAAGACAGCGGCGGCCGTGCGGCGGGTGCCCGGGGCAGCGGCGGCCGGGCCGCGCGGCTGAGGCAGAAGACGGCGGCAGCGGCAACCGGGCCGCGCGGCTGAGGCGGAAGACGGCGGCGGCCGGGCCGCGTGGTGAAGGCGACAGACGACGACAGCTGTGCGGCGCGCGACGCCCGTCGCCCGGGCCGCGCGGCTGATGAAGACGTGTCACACCCAGAAATCCACAAACCAGAATTTCTAAGCTGAATGTGCATTAAACCCCTGTCCAGGACCAGCCAGGGTACACAAACGACAATTGTTGACATATAGATCCACGTCTTACAAAAATATAACAAATTACAAATACAGCGGAAAAGATAAAAGCGAGCTAAGCCTGAAGACTTGACTCTTGCAGCGGGCGATTCCATTCCACAGGCAATCCTTAACGGCAGCGACGAAACCAACCTCTTCGAGACATCTCCAACTGAGAAGAACTTCAACTCTGGAGAGGGGGAAAACAGAGCAAGACTGAGTATTATCTACTGTACTCAGCAAGTCATACCGGAAGAGAAGGTATGA
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| CDS seq | ATGGCGGCGCCGCCGCTAGACATCACCGCCGAGATTGATCCGATGCTCCACAAGTCTATCCCTAAGGGCGGCCGTATCACCCGCCATATCATCCCCACCCACTGCGACGGCCTTGTCGCCTTTGCCACCTATGGCAGGGCCATGTTCGTGTGCAACCCGGCCACCCAGGAGCTCGTCGTGCTACCGCCCGGCAGCGGCAGCGGCCCATGCCCACAGTCTACAGAATCAACGGCAGCGGTCGGCTTCAACCTGTGGTGGAACAGGTACATCGTTGTCAGGTGCTTCTACCGCAAGTCCCACAACGATCTGCCGGTCTACGACATCGGACACGAGATCTTCACGCTCGGCGCAGGCGCTGGCGATGGATGGCAGCGCATGCAAGACCCGTCGCGTGCCATCAGTCTTGGCGGGAGGAGACCCGCTGCCTGCACGCGTGGGGGTTCCATCTACAGGTTCATCAACGAGTCTCAGCCATGCGCGCTGCTGTGGTTCAGCCTGCGAGACGAGGCGTTCGACGCGGTCCCATCCTCTCCGGGCTGCACGGCCTGCGACAACGACGACCGTCTCGCGGACCTCGCCGGCGAGCTGTGCTACGTGCATCGCATCCGCACGAGCGTGGCCACCCACGAAGTTTGGATGGCGGCGGCGGTTGATGACGATGACCAAGAGTGGTGGTTGCGATACCGAGTGGACCTGTGGCACAACCCGTGGGGCGTGCGCCGCCGCTGTGGCGGCGGCGGCAACGGCCAACGCTGGTTCCACAGCTTCGGCGCCACGGCGGCCGGCGACGTTGGTGGCCATGTTGTACAAGGAGCTGTGGTGTCACAGGGAGCAGAGCAAACCGGTGGTGAAAGACGTGAACGTGTAGGGGAGCCGGTACAGCTACATATGCAGAGGGAAAATGTCAGTGTCCGGAAGAAAAATGGCATAGAGAAAGGCATGGGGAAACAGAGGGAGTATTTGGCTATAAATTTTCCAATTGGTGTATTCCGTGTATTTCTTGAACTTTACATTCCTGACACCGACGAGGGTCTCACGGCGGCGGCGGACACAGGAGATGGTGGCGGCTGCGCCACGGACGTGGTAGACATCGGCGGCGGGCGACGGGGGCAGCGGCGGCCGGGCCACTTGGCGGAGGAGGAAGATGGCAGCGGCGCGGGCGATTCCATTCCACAGGCAATCCTTAACGGCAGCGACGAAACCAACCTCTTCGAGACATCTCCAACTGAGAAGAACTTCAACTCTGGAGAGGGGGAAAACAGAGCAAGACTGAGTATTATCTACTGTACTCAGCAAGTCATACCGGAAGAGAAGGTATGA
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| Protein seq | MAAPPLDITAEIDPMLHKSIPKGGRITRHIIPTHCDGLVAFATYGRAMFVCNPATQELVVLPPGSGSGPCPQSTESTAAVGFNLWWNRYIVVRCFYRKSHNDLPVYDIGHEIFTLGAGAGDGWQRMQDPSRAISLGGRRPAACTRGGSIYRFINESQPCALLWFSLRDEAFDAVPSSPGCTACDNDDRLADLAGELCYVHRIRTSVATHEVWMAAAVDDDDQEWWLRYRVDLWHNPWGVRRRCGGGGNGQRWFHSFGATAAGDVGGHVVQGAVVSQGAEQTGGERRERVGEPVQLHMQRENVSVRKKNGIEKGMGKQREYLAINFPIGVFRVFLELYIPDTDEGLTAAADTGDGGGCATDVVDIGGGRRGQRRPGHLAEEEDGSGAGDSIPQAILNGSDETNLFETSPTEKNFNSGEGENRARLSIIYCTQQVIPEEKV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g30570 | LOC_Os02g30570.1 | Chr02 | 18187498 | 18190634 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCGCCGCCGCTAGACATCACCGCCGAGATTGATCCGATGCTCCACAAGTCTATCCCTAAGGGCGGCCGTATCACCCGCCATATCATCCCCACCCACTGCGACGGCCTTGTCGCCTTTGCCACCTATGGCAGGGCCATGTTCGTGTGCAACCCGGCCACCCAGGAGCTCGTCGTGCTACCGCCCGGCAGCGGCAGCGGCCCATGCCCACAGTCTACAGAATCAACGGCAGCGGTCGGCTTCAACCTGTGGTGGAACAGGTACATCGTTGTCAGGTGCTTCTACCGCAAGTCCCACAACGATCTGCCGGTCTACGACATCGGACACGAGATCTTCACGCTCGGCGCAGGCGCTGGCGATGGATGGCAGCGCATGCAAGACCCGTCGCGTGCCATCAGTCTTGGCGGGAGGAGACCCGCTGCCTGCACGCGTGGGGGTTCCATCTACAGGTTCATCAACGAGTCTCAGCCATGCGCGCTGCTGTGGTTCAGCCTGCGAGACGAGGCGTTCGACGCGGTCCCATCCTCTCCGGGCTGCACGGCCTGCGACAACGACGACCGTCTCGCGGACCTCGCCGGCGAGCTGTGCTACGTGCATCGCATCCGCACGAGCGTGGCCACCCACGAAGTTTGGATGGCGGCGGCGGTTGATGACGATGACCAAGAGTGGTGGTTGCGATACCGAGTGGACCTGTGGCACAACCCGTGGGGCGTGCGCCGCCGCTGTGGCGGCGGCGGCAACGGCCAACGCTGGTTCCACAGCTTCGGCGCCACGGCGGCCGGCGACGTTGGTGGCCATGTTGTACAAGGAGCTGTGGTGTCACAGGGAGCAGAGCAAACCGGTGGTGAAAGACGTGAACGTGTAGGGGAGCCGGTACAGCTACATATGCAGAGGGAAAATGTCAGTGTCCGGAAGAAAAATGGCATAGAGAAAGGCATGGGGAAACAGAGGGAGTATTTGGCTATAAATTTTCCAATTGGTGTATTCCGTGTATTTCTTGAACTTTACATTCCTGACACCGACGAGGGTCTCACGGCGGCGGCGGACACAGGAGATGGTGGCGGCTGCGCCACGGACGTGGTAGACATCGGCGGCGGGCGACGGGGGCAGCGGCGGCCGGGCCACTTGGCGGAGGAGGAAGATGGCAGCGGCGCGGGCGATTCCATTCCACAGGCAATCCTTAACGGCAGCGACGAAACCAACCTCTTCGAGACATCTCCAACTGAGAAGAACTTCAACTCTGGAGAGGGGGAAAACAGAGCAAGACTGAGTATTATCTACTGTACTCAGCAAGTCATACCGGAAGAGAAGGTATGA
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| Protein seq | MAAPPLDITAEIDPMLHKSIPKGGRITRHIIPTHCDGLVAFATYGRAMFVCNPATQELVVLPPGSGSGPCPQSTESTAAVGFNLWWNRYIVVRCFYRKSHNDLPVYDIGHEIFTLGAGAGDGWQRMQDPSRAISLGGRRPAACTRGGSIYRFINESQPCALLWFSLRDEAFDAVPSSPGCTACDNDDRLADLAGELCYVHRIRTSVATHEVWMAAAVDDDDQEWWLRYRVDLWHNPWGVRRRCGGGGNGQRWFHSFGATAAGDVGGHVVQGAVVSQGAEQTGGERRERVGEPVQLHMQRENVSVRKKNGIEKGMGKQREYLAINFPIGVFRVFLELYIPDTDEGLTAAADTGDGGGCATDVVDIGGGRRGQRRPGHLAEEEDGSGAGDSIPQAILNGSDETNLFETSPTEKNFNSGEGENRARLSIIYCTQQVIPEEKV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0474000 | SBH | 1.774810 | 1.569194 | 2.945289 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g31530 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0474000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0033900 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016970 | SBH | 0.572420 | 2.524544 | 4.199785 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0033890 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0033470 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0033550 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0270100 | SBH | 8.955091 | 42.019552 | 49.291393 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0033360 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0291000 | SBH | 17.5057705 | 88.479702 | 34.999449 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0033620 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0033440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0033760 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0033650 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0033250 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G033930 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0033640 | RBH | 0.0 | 0.0 | 0.0 |
