Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g29810 | OGI:04059010 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:17765039-17766782 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTATGTACTTTTAATAAGATCAATCTCATTAATATGAGTTGTCTACAATATAAATTGAACAAACAACAAAAATAATTGAACCATCTTGAATACAATGAGGTAAGTAAAATCTGGAGTTGATCACGAAAGCTACATGATTTGGTCAAACCTATTCAATGTTCCACCTTTGTTAAGGTCAATAATGTGATAGTTTTATATTGGAATAAGTTAAGCTACATGTTACGCTTATGACAATTAATATTGAACTATTTTTCGATACAGATATATACATACTATTTTTATGTTTCTAAACTAGTATTTTATATAAGTCATTAATTGTGAAAGGTTTAAATGTTAACTAGATCCTGTCTAAAATGTCCTTTATTCATGACCAGTATACATATACATACTAACTGGGATGTTTGGAATTGTATATGCATGATAAAATATGTAGAGAAAAGTATTAAATTCTTTGTATACCTACAGTGTAAAACTTACAAAAGATATATCACCAGGACATTTTGCCCTGCTGATCGATAAACTTGTACATAATTATTATATATATAATTTAGGGATAATTGAATTACCTTTGTCACGAGAGCAGCCCTGCGAAATATAGGGATTTCCTGCAAAGCCAGAATCGCAGCTGCACAGATATCCAAAGTATGTTGAACTTGAATTCAAGCATGAGCTATTCGTACTGACACAGGCATAGCTCGTCTGTTTATCAAGGGCGCTGCTGCAACTTGGTTGATCAACAATACTCCAACCGAGGTCGGCAGAGTATAAACTTAATTGGATGCTATTCCACAAGGAATTGTTGCTAGAGTGAGATTCCGTTTTGTTGTGCCGGACGAATTGGAGGTCAAAGAAACTTGTACTGAATGAAAAGTAACAACATCCAGTACCGTTGCAGTTCTTCTTGGCCTCGCCTTCTGTAAATATTTCGTTGGGACATGTAATGTTGCATAGGAGCATGGATTCGTTGTACTGGATAAAGTATACATCGAAGTCGCAACCGGTGATTTGCACCGTGGCATATAATGGAAAAAAGCTTTCAGGATAGGTCCAGGTATAGTTGTAAACATCGACGCCGGGCACCACAGAGATGGTGTCGGACATGCTGACGCTAACACTAGGGACGTTGTTGTCGTCCGAAGAGCTGACAACGATGTCGTCGACAACCTGGGTGCCGCCCTGTAAAAAGAGACTCGGTGGCTGGAGGTGATTGCCGTGGAGGCAAGTGAGCTCAAAATTGGGTTGGCGGAAGCAGCCTTGCCCGATGCCAAAGGGATACTCAAATGTCAAATTGCCACAACTGGTGTTGCAGCCAGCGAGCGTCGGCGCCGTTGGAGCACCACCGGTTGGCATTGGAAGCAGCACCAGTACAAGCAGAGAGTATGCTGCAGGTAATAATAAAATCATCTTCGTCTCACCTTCGAGAGATTCACCTACCTACTAATGACTGAGGTCTGAGGATCTGGAAATTTGATCTTGGCGTTTGAACTAGTGACCCGGGGACTGCATGTCTCATATATAGAAGGCTGCGAAAGAGTTTGTGTGTTTCCTGGCAATTTCCTGACCCATTTAGGTTAACTCTAGGTCCAGCTCTATGTCTTCTATAGCTGGAGCCAACCAAACGGTTTCAGCTTCACCTAAAAACGAGATGGAGTTGGCTAGAATGTTCTCACAAAATGAACTACAGAAATGAACAGCTTCATAACTCAACTTGAGACTCAACTCCAATCCAAAACTAACTCAT
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| CDS seq | ATGATTTTATTATTACCTGCAGCATACTCTCTGCTTGTACTGGTGCTGCTTCCAATGCCAACCGGTGGTGCTCCAACGGCGCCGACGCTCGCTGGCTGCAACACCAGTTGTGGCAATTTGACATTTGAGTATCCCTTTGGCATCGGGCAAGGCTGCTTCCGCCAACCCAATTTTGAGCTCACTTGCCTCCACGGCAATCACCTCCAGCCACCGAGTCTCTTTTTACAGGGCGGCACCCAGGTTGTCGACGACATCGTTGTCAGCTCTTCGGACGACAACAACGTCCCTAGTGTTAGCGTCAGCATGTCCGACACCATCTCTGTGGTGCCCGGCGTCGATGTTTACAACTATACCTGGACCTATCCTGAAAGCTTTTTTCCATTATATGCCACGGTGCAAATCACCGGTTGCGACTTCGATGTATACTTTATCCAGTACAACGAATCCATGCTCCTATGCAACATTACATGTCCCAACGAAATATTTACAGAAGGCGAGGCCAAGAAGAACTGCAACGCTGCGATTCTGGCTTTGCAGGAAATCCCTATATTTCGCAGGGCTGCTCTCGTGACAAAGACAACTCATATTAATGAGATTGATCTTATTAAAAGTACATACTAG
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| Protein seq | MILLLPAAYSLLVLVLLPMPTGGAPTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGGTQVVDDIVVSSSDDNNVPSVSVSMSDTISVVPGVDVYNYTWTYPESFFPLYATVQITGCDFDVYFIQYNESMLLCNITCPNEIFTEGEAKKNCNAAILALQEIPIFRRAALVTKTTHINEIDLIKSTY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g29810 | LOC_Os04g29810.1 | Chr04 | 17765039 | 17766782 | - | MSU_osa1r7 | ||
| CDS seq | ATGATTTTATTATTACCTGCAGCATACTCTCTGCTTGTACTGGTGCTGCTTCCAATGCCAACCGGTGGTGCTCCAACGGCGCCGACGCTCGCTGGCTGCAACACCAGTTGTGGCAATTTGACATTTGAGTATCCCTTTGGCATCGGGCAAGGCTGCTTCCGCCAACCCAATTTTGAGCTCACTTGCCTCCACGGCAATCACCTCCAGCCACCGAGTCTCTTTTTACAGGGCGGCACCCAGGTTGTCGACGACATCGTTGTCAGCTCTTCGGACGACAACAACGTCCCTAGTGTTAGCGTCAGCATGTCCGACACCATCTCTGTGGTGCCCGGCGTCGATGTTTACAACTATACCTGGACCTATCCTGAAAGCTTTTTTCCATTATATGCCACGGTGCAAATCACCGGTTGCGACTTCGATGTATACTTTATCCAGTACAACGAATCCATGCTCCTATGCAACATTACATGTCCCAACGAAATATTTACAGAAGGCGAGGCCAAGAAGAACTGCAACGCTGCGATTCTGGCTTTGCAGGAAATCCCTATATTTCGCAGGGCTGCTCTCGTGACAAAGACAACTCATATTAATGAGATTGATCTTATTAAAAGTACATACTAG
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| Protein seq | MILLLPAAYSLLVLVLLPMPTGGAPTAPTLAGCNTSCGNLTFEYPFGIGQGCFRQPNFELTCLHGNHLQPPSLFLQGGTQVVDDIVVSSSDDNNVPSVSVSMSDTISVVPGVDVYNYTWTYPESFFPLYATVQITGCDFDVYFIQYNESMLLCNITCPNEIFTEGEAKKNCNAAILALQEIPIFRRAALVTKTTHINEIDLIKSTY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.476553 | 0.0 | 0.218055 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0367000 | RBH | 0.315103 | 0.433783 | 0.543453 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g29880 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0367000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009860 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010450 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010030 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010260 | RBH | 0.0 | 0.0 | 0.413655 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0295300 | SBH | 0.0188215 | 0.172501 | 0.0460255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010060 | SBH | 0.0 | 0.270060 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0279000 | RBH | 0.3465955 | 0 | 0.105909 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010060 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010250 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010300 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010790 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010170 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009320 | RBH | 0.426020 | 0.0 | 0.646698 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009360 | RBH | 0.000000 | 0.0 | 0.0 |
