Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g25520 | OGI:04049300 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:14800154-14801544 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTAGATTGTATGAATGGAATTTGGATAGAAAACTCTTTAGCTTTGTTCTTGATAATTGCTCAGTCAATGATGTAGTGATTCGGGAAATACTTGGTATCCTTTTACCCAAGCAAGCATTACATTTAAAAGGTGAATTCTTTCAAATCCGATGTGCAATGCATATATTGAACTTAATAGTTTAGGATGGATTGAAAGTAATTGCCCCCATTCTGGTAAATATTCGAGAGACAATTAGTTATATCAACAAATCCACGTCAAGATTGGAAAAGTTTGAATTGATTACCCAACAAGTGAATGCTCCCAAGTTATCTTTAGAAACTGATACTCCAACCAGATGGAATTCAACTTTTCACATGCTTGAGAGAACCATTAAATTCCGTGAAGCTTTTCTGTGATTGAAAGAATGTGACAAGTTTTTCCCATCAGATGAGGACTGGGTACATGTTACTAAAGTAACAGATTGTTTGCGTGTCATTTATGAAGCAACTCTGAGGGCTTCTGGCTCAAAATTTTCCACAGCAAGTCTTTACTTCAATGATTTTTGTGGAATATATATTTTTCTGCAAGAATTGAAGTTGAGTGATGATAACTTTATTGCTTCAATGGCTGTGCCAATGGCAGAAAAAATTGAGAAATATTGGGAGACATGCAACAAGTTATTATCTATTGCAACCATTCTTGATCCTCGCTACAAATTGAAGTCTATTGAGTACTTCTATGGATTGCTTTATCCTTCTGAAAAAGATGTGAAATTTGAACATATGAGGAGATGCTTTAGTGAATTATTTGATGAGTATTCAAAGCAAGCAACAATGCAATCCTCATCAGTTGTCGACACTTCAAGAAATTTCCAGGAGTGCAGTTCACAATCACATGAGTCCTCGTTGAGCTTATTTTCTACCATAGTAGGATTAGAAAAGTATATCCAAGATAGCAACTCAAGCCAGCAAACAAGATCAGAGCTCGATGTCTATCTTGATGATCCTCCACATCCTGGAATCAGTGATACTTCTTTTGACATCTTGGCTTGGTGGAAGTTGTATGGTTCCAAATATCCAATTATTTCTCGAATGGCTCATGATATCTTAAGTGTTCCTATGTCAACAGTAGCATCTGAATCATGCTTCAGTTTAGCTAATCAAGCACTTTGTGAGAAGAGGTGCAGTCTACTGCCTGAAACACTTGAAGGTGTGATTTGTACACAGGATTAGCTGAGGGATTATATACCAGGTACAGATCTCCAATAAAAGAGTAAAATATTGTATTGCAATTTTGATGAATTTGCTAATCACTTTTTTTTTCTGGAGCAGATGAGTTTTTGGAACAGATGATAGCAGAAGATGTGTCATGTACTCAAGAACAAGCAGTTGTAGATCAACTTGAATGA
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| CDS seq | ATGGCTAGATTGTATGAATGGAATTTGGATAGAAAACTCTTTAGCTTTGTTCTTGATAATTGCTCAGTCAATGATGTAGTGATTCGGGAAATACTTGGTATCCTTTTACCCAAGCAAGCATTACATTTAAAAGAATGTGACAAGTTTTTCCCATCAGATGAGGACTGGGTACATGTTACTAAAGTAACAGATTGTTTGCGTGTCATTTATGAAGCAACTCTGAGGGCTTCTGGCTCAAAATTTTCCACAGCAAGTCTTTACTTCAATGATTTTTGTGGAATATATATTTTTCTGCAAGAATTGAAGTTGAGTGATGATAACTTTATTGCTTCAATGGCTGTGCCAATGGCAGAAAAAATTGAGAAATATTGGGAGACATGCAACAAGTTATTATCTATTGCAACCATTCTTGATCCTCGCTACAAATTGAAGTCTATTGAGTACTTCTATGGATTGCTTTATCCTTCTGAAAAAGATGTGAAATTTGAACATATGAGGAGATGCTTTAGTGAATTATTTGATGAGTATTCAAAGCAAGCAACAATGCAATCCTCATCAGTTGTCGACACTTCAAGAAATTTCCAGGAGTGCAGTTCACAATCACATGAGTCCTCGTTGAGCTTATTTTCTACCATAGTAGGATTAGAAAAGTATATCCAAGATAGCAACTCAAGCCAGCAAACAAGATCAGAGCTCGATGTCTATCTTGATGATCCTCCACATCCTGGAATCAGTGATACTTCTTTTGACATCTTGGCTTGGTGGAAGTTGTATGGTTCCAAATATCCAATTATTTCTCGAATGGCTCATGATATCTTAAGTGTTCCTATGTCAACAGTAGCATCTGAATCATGCTTCAGTTTAGCTAATCAAGCACTTTGTGAGAAGAGGTGCAGTCTACTGCCTGAAACACTTGAAGATGAGTTTTTGGAACAGATGATAGCAGAAGATGTGTCATGTACTCAAGAACAAGCAGTTGTAGATCAACTTGAATGA
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| Protein seq | MARLYEWNLDRKLFSFVLDNCSVNDVVIREILGILLPKQALHLKECDKFFPSDEDWVHVTKVTDCLRVIYEATLRASGSKFSTASLYFNDFCGIYIFLQELKLSDDNFIASMAVPMAEKIEKYWETCNKLLSIATILDPRYKLKSIEYFYGLLYPSEKDVKFEHMRRCFSELFDEYSKQATMQSSSVVDTSRNFQECSSQSHESSLSLFSTIVGLEKYIQDSNSSQQTRSELDVYLDDPPHPGISDTSFDILAWWKLYGSKYPIISRMAHDILSVPMSTVASESCFSLANQALCEKRCSLLPETLEDEFLEQMIAEDVSCTQEQAVVDQLE |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g25520 | LOC_Os04g25520.1 | Chr04 | 14800154 | 14801544 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTAGATTGTATGAATGGAATTTGGATAGAAAACTCTTTAGCTTTGTTCTTGATAATTGCTCAGTCAATGATGTAGTGATTCGGGAAATACTTGGTATCCTTTTACCCAAGCAAGCATTACATTTAAAAGAATGTGACAAGTTTTTCCCATCAGATGAGGACTGGGTACATGTTACTAAAGTAACAGATTGTTTGCGTGTCATTTATGAAGCAACTCTGAGGGCTTCTGGCTCAAAATTTTCCACAGCAAGTCTTTACTTCAATGATTTTTGTGGAATATATATTTTTCTGCAAGAATTGAAGTTGAGTGATGATAACTTTATTGCTTCAATGGCTGTGCCAATGGCAGAAAAAATTGAGAAATATTGGGAGACATGCAACAAGTTATTATCTATTGCAACCATTCTTGATCCTCGCTACAAATTGAAGTCTATTGAGTACTTCTATGGATTGCTTTATCCTTCTGAAAAAGATGTGAAATTTGAACATATGAGGAGATGCTTTAGTGAATTATTTGATGAGTATTCAAAGCAAGCAACAATGCAATCCTCATCAGTTGTCGACACTTCAAGAAATTTCCAGGAGTGCAGTTCACAATCACATGAGTCCTCGTTGAGCTTATTTTCTACCATAGTAGGATTAGAAAAGTATATCCAAGATAGCAACTCAAGCCAGCAAACAAGATCAGAGCTCGATGTCTATCTTGATGATCCTCCACATCCTGGAATCAGTGATACTTCTTTTGACATCTTGGCTTGGTGGAAGTTGTATGGTTCCAAATATCCAATTATTTCTCGAATGGCTCATGATATCTTAAGTGTTCCTATGTCAACAGTAGCATCTGAATCATGCTTCAGTTTAGCTAATCAAGCACTTTGTGAGAAGAGGTGCAGTCTACTGCCTGAAACACTTGAAGATGAGTTTTTGGAACAGATGATAGCAGAAGATGTGTCATGTACTCAAGAACAAGCAGTTGTAGATCAACTTGAATGA
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| Protein seq | MARLYEWNLDRKLFSFVLDNCSVNDVVIREILGILLPKQALHLKECDKFFPSDEDWVHVTKVTDCLRVIYEATLRASGSKFSTASLYFNDFCGIYIFLQELKLSDDNFIASMAVPMAEKIEKYWETCNKLLSIATILDPRYKLKSIEYFYGLLYPSEKDVKFEHMRRCFSELFDEYSKQATMQSSSVVDTSRNFQECSSQSHESSLSLFSTIVGLEKYIQDSNSSQQTRSELDVYLDDPPHPGISDTSFDILAWWKLYGSKYPIISRMAHDILSVPMSTVASESCFSLANQALCEKRCSLLPETLEDEFLEQMIAEDVSCTQEQAVVDQLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31210 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027550 | SBH | 0.997823 | 14.929879 | 7.169707 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028340 | SBH | 0.322403 | 1.722096 | 3.304581 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028050 | SBH | 1.502465 | 8.118349 | 10.972941 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027830 | SBH | 0.155189 | 0.321003 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0238800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0428300 | SBH | 0.020812 | 0 | 0.0789655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027170 | SBH | 0.746404 | 0.090532 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027680 | SBH | 0.135441 | 7.204219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
