Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g24290 | OGI:04046380 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:13912958-13915062 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGGCGACCCTCCCTCTTCCTCAACGCCGTCGCGGCAGGGGCGGCTTGGCCGCCTTTGGTGGCGCCGCCGCACTGCACGGATCCGGTGCCGCCGCCGACGGCGAGTGGCGGGGCCGACGGATCCGCCGCCGGCGACGACGCCGGGTGGCTGGGCGACGCATCCGGCGACGCCGCCGACGGATCCGCTGGGGGCGATGACGGCAGGCGGCGGGGGAGACGGATCTGGCGAGGACGACGATGGCGGGCGGCGGGGGAGACGGAAGCGGTGGCGGCGACGACGGCGGCGGCTGGGGCGACGGATCCGGTGCTGCCACCAGGGTTTCATTTACCGCCGGGGCCGCGGTTACCGCGCCCCGGCGGTAAGCACGGTTACCGCACGGTAACCGCGGTAACCGTGACAAACCGCGACAAACCGTATAAAATTTATCAAAAATTCAAATTATTTTTCAAATTTATTTGAATTTGACGCGGTTACCGCGGTTTACCCCTTACCGTACCCCCGCGGTAAGCGCGGTAACCGCGGTAACCGCGCGGTTTACCGCGGTAAATGCAACCCTGGCTGCCACCGACGGATCCAGCGGGGGCGACGACGGCGGGCGGCGGCGGGGGGGGGGGGGGGGGGGCAACAGGTCCGCCGCCGGCGACGACGTGCGACGTGGACGGCGGGCTAGGGTTTGTGATTTTTTGGATTTTTATTTTTTTGGGGGGTTTTGGATTTTATTTTTTTTTTGTTTGCTGAATTTATTTTCGCATGCGGCCGGTATAAGCGACCGCATGCGAAAATCCCATGGCGGGCGGCGGGGGAGACGGAACAGAAAATGTCAACCTGAGCTAATGATCATACTTACTACAGGTATTGTCATTGGGCTTAGCTGCGGCTTTGGCATCCTACTTGTCAGCTTAAGTACAATGGTTTTCATTCGTAGATGGAAAAATGACATACAAAAGCAACTACGAAGGAAACATTTTAGAAAGAATCAAGGCCTTCTCCTAGAACAACTGATATCTTCAGATGAAAATGCAAGTGACAAAACAAAGATTTTCTCTTTAGATGAGCTCGAAAAGGCAACTAATAACTTTGACCCCACACATATCCTTGGTCATGGAGGGCATGGTATGGTGTACAAAGGCATTTTATCAGATCAACGCGTGGTTGCAATAAAAAGGTCTAAGGACATTAAGGAAGGTGAGATCAGCCAATTTATTAATGAGGTAGCTATTCTCTCCCAAATAAATCATCGAAATATAGTAAAACTATTTGGATGTTGTCTTGAAACCGAGGTCCCTCTATTGGTCTATGACTTCATTCCCAACGGCTCATTATTTGATATTCTACATTCTGGTTCAAGCAACCGATTTTCCTTGTCATGGGATGATTGTCTCAGAATTGCGGTGGAAGCTGCAGGAGCTCTCTGTTACCTCCATTCCGCAGCTTCAGTATCGGTCTTCCATCGTGATGTCAAATCCTCCAATATACTTCTAGATGCGAACTACACTGCTAAAGTAGCAGACTTTGGTGCTTCAAGATTGGTTCCAATTGACCAAACTCACATTGTCACTAATGTTCAAGGCACATTTGGTTACCTAGATCCAGAATATTACCATACAGGGCAACTAAATGAGAAGAGTGATGTATATAGTTTTGGTGTGGTACTTGTGGAACTACTGCTCAGAAGAGAACCTATTTTTACAACAGTGTCAGGATCAAAGCAGAACTTGTCCAACTATTTCCTCTGGGAGCTGAAGGCAAGGCCAATCAAAGAGATAGTTGCAGCTCAAGTTTGTGAGGAAGCTACCGAGGAAGAGATAAAAAGTGTCAGTTCTCTTGCGGAAATGTGCTTGATGCTCCGAAGTGAAGATAGGCCTACGATGAAGCAAGTTGAAATGACTTTGCAGTTCTTGCGAACAAAAAGGTTGACGTCATCCCATGCTGCAGCAGAAAATGATGAAGAGATGCAGTCATTACTACATACAAGGTCTGAAGTTAGTTGTGAGTCATTGGCTAATAACTTGGGTGTCAGTGCTAATCCTGAGTCTGGAAATAGCCACAAATGCTATAGCTTGGAGCAAGAGTTCATTTCATCTATTGGACTGCCACGCTAA
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| CDS seq | ATGAGGCGACCCTCCCTCTTCCTCAACGCCGTCGCGGCAGGGGCGGCTTGGCCGCCTTTGGTGGCGCCGCCGCACTGCACGGATCCGGTGCCGCCGCCGACGGCGAGTGGCGGGGCCGACGGATCCGCCGCCGGCGACGACGCCGGGTGGCTGGGCGACGCATCCGGCGACGCCGCCGACGGATCCGCTGGGGGCGATGACGGCAGGCGGCGGGGGAGACGGATCTGGCGAGGACGACGATGGCGGGCGGCGGGGGAGACGGAAGCGGTGGCGGCGACGACGGCGGCGGCTGGGGCGACGGATCCGGTGCTGCCACCAGGGTTTCATTTACCGCCGGGGCCGCGGTTACCGCGCCCCGGCGGTATTGTCATTGGGCTTAGCTGCGGCTTTGGCATCCTACTTGTCAGCTTAAGTACAATGGTTTTCATTCGTAGATGGAAAAATGACATACAAAAGCAACTACGAAGGAAACATTTTAGAAAGAATCAAGGCCTTCTCCTAGAACAACTGATATCTTCAGATGAAAATGCAAGTGACAAAACAAAGATTTTCTCTTTAGATGAGCTCGAAAAGGCAACTAATAACTTTGACCCCACACATATCCTTGGTCATGGAGGGCATGGTATGGTGTACAAAGGCATTTTATCAGATCAACGCGTGGTTGCAATAAAAAGGTCTAAGGACATTAAGGAAGGTGAGATCAGCCAATTTATTAATGAGGTAGCTATTCTCTCCCAAATAAATCATCGAAATATAGTAAAACTATTTGGATGTTGTCTTGAAACCGAGGTCCCTCTATTGGTCTATGACTTCATTCCCAACGGCTCATTATTTGATATTCTACATTCTGGTTCAAGCAACCGATTTTCCTTGTCATGGGATGATTGTCTCAGAATTGCGGTGGAAGCTGCAGGAGCTCTCTGTTACCTCCATTCCGCAGCTTCAGTATCGGTCTTCCATCGTGATGTCAAATCCTCCAATATACTTCTAGATGCGAACTACACTGCTAAAGTAGCAGACTTTGGTGCTTCAAGATTGGTTCCAATTGACCAAACTCACATTGTCACTAATGTTCAAGGCACATTTGGTTACCTAGATCCAGAATATTACCATACAGGGCAACTAAATGAGAAGAGTGATGTATATAGTTTTGGTGTGGTACTTGTGGAACTACTGCTCAGAAGAGAACCTATTTTTACAACAGTGTCAGGATCAAAGCAGAACTTGTCCAACTATTTCCTCTGGGAGCTGAAGGCAAGGCCAATCAAAGAGATAGTTGCAGCTCAAGTTTGTGAGGAAGCTACCGAGGAAGAGATAAAAAGTGTCAGTTCTCTTGCGGAAATGTGCTTGATGCTCCGAAGTGAAGATAGGCCTACGATGAAGCAAGTTGAAATGACTTTGCAGTTCTTGCGAACAAAAAGGTTGACGTCATCCCATGCTGCAGCAGAAAATGATGAAGAGATGCAGTCATTACTACATACAAGGTCTGAAGTTAGTTGTGAGTCATTGGCTAATAACTTGGGTGTCAGTGCTAATCCTGAGTCTGGAAATAGCCACAAATGCTATAGCTTGGAGCAAGAGTTCATTTCATCTATTGGACTGCCACGCTAA
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| Protein seq | MRRPSLFLNAVAAGAAWPPLVAPPHCTDPVPPPTASGGADGSAAGDDAGWLGDASGDAADGSAGGDDGRRRGRRIWRGRRWRAAGETEAVAATTAAAGATDPVLPPGFHLPPGPRLPRPGGIVIGLSCGFGILLVSLSTMVFIRRWKNDIQKQLRRKHFRKNQGLLLEQLISSDENASDKTKIFSLDELEKATNNFDPTHILGHGGHGMVYKGILSDQRVVAIKRSKDIKEGEISQFINEVAILSQINHRNIVKLFGCCLETEVPLLVYDFIPNGSLFDILHSGSSNRFSLSWDDCLRIAVEAAGALCYLHSAASVSVFHRDVKSSNILLDANYTAKVADFGASRLVPIDQTHIVTNVQGTFGYLDPEYYHTGQLNEKSDVYSFGVVLVELLLRREPIFTTVSGSKQNLSNYFLWELKARPIKEIVAAQVCEEATEEEIKSVSSLAEMCLMLRSEDRPTMKQVEMTLQFLRTKRLTSSHAAAENDEEMQSLLHTRSEVSCESLANNLGVSANPESGNSHKCYSLEQEFISSIGLPR |
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| Function | Wall-associated receptor kinase-like 22 [UniProtKB/Swiss-Prot:Q8RY17] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g24290 | LOC_Os04g24290.1 | Chr04 | 13912958 | 13915062 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGGCGACCCTCCCTCTTCCTCAACGCCGTCGCGGCAGGGGCGGCTTGGCCGCCTTTGGTGGCGCCGCCGCACTGCACGGATCCGGTGCCGCCGCCGACGGCGAGTGGCGGGGCCGACGGATCCGCCGCCGGCGACGACGCCGGGTGGCTGGGCGACGCATCCGGCGACGCCGCCGACGGATCCGCTGGGGGCGATGACGGCAGGCGGCGGGGGAGACGGATCTGGCGAGGACGACGATGGCGGGCGGCGGGGGAGACGGAAGCGGTGGCGGCGACGACGGCGGCGGCTGGGGCGACGGATCCGGTGCTGCCACCAGGGTTTCATTTACCGCCGGGGCCGCGGTTACCGCGCCCCGGCGGTATTGTCATTGGGCTTAGCTGCGGCTTTGGCATCCTACTTGTCAGCTTAAGTACAATGGTTTTCATTCGTAGATGGAAAAATGACATACAAAAGCAACTACGAAGGAAACATTTTAGAAAGAATCAAGGCCTTCTCCTAGAACAACTGATATCTTCAGATGAAAATGCAAGTGACAAAACAAAGATTTTCTCTTTAGATGAGCTCGAAAAGGCAACTAATAACTTTGACCCCACACATATCCTTGGTCATGGAGGGCATGGTATGGTGTACAAAGGCATTTTATCAGATCAACGCGTGGTTGCAATAAAAAGGTCTAAGGACATTAAGGAAGGTGAGATCAGCCAATTTATTAATGAGGTAGCTATTCTCTCCCAAATAAATCATCGAAATATAGTAAAACTATTTGGATGTTGTCTTGAAACCGAGGTCCCTCTATTGGTCTATGACTTCATTCCCAACGGCTCATTATTTGATATTCTACATTCTGGTTCAAGCAACCGATTTTCCTTGTCATGGGATGATTGTCTCAGAATTGCGGTGGAAGCTGCAGGAGCTCTCTGTTACCTCCATTCCGCAGCTTCAGTATCGGTCTTCCATCGTGATGTCAAATCCTCCAATATACTTCTAGATGCGAACTACACTGCTAAAGTAGCAGACTTTGGTGCTTCAAGATTGGTTCCAATTGACCAAACTCACATTGTCACTAATGTTCAAGGCACATTTGGTTACCTAGATCCAGAATATTACCATACAGGGCAACTAAATGAGAAGAGTGATGTATATAGTTTTGGTGTGGTACTTGTGGAACTACTGCTCAGAAGAGAACCTATTTTTACAACAGTGTCAGGATCAAAGCAGAACTTGTCCAACTATTTCCTCTGGGAGCTGAAGGCAAGGCCAATCAAAGAGATAGTTGCAGCTCAAGTTTGTGAGGAAGCTACCGAGGAAGAGATAAAAAGTGTCAGTTCTCTTGCGGAAATGTGCTTGATGCTCCGAAGTGAAGATAGGCCTACGATGAAGCAAGTTGAAATGACTTTGCAGTTCTTGCGAACAAAAAGGTTGACGTCATCCCATGCTGCAGCAGAAAATGATGAAGAGATGCAGTCATTACTACATACAAGGTCTGAAGTTAGTTGTGAGTCATTGGCTAATAACTTGGGTGTCAGTGCTAATCCTGAGTCTGGAAATAGCCACAAATGCTATAGCTTGGAGCAAGAGTTCATTTCATCTATTGGACTGCCACGCTAA
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| Protein seq | MRRPSLFLNAVAAGAAWPPLVAPPHCTDPVPPPTASGGADGSAAGDDAGWLGDASGDAADGSAGGDDGRRRGRRIWRGRRWRAAGETEAVAATTAAAGATDPVLPPGFHLPPGPRLPRPGGIVIGLSCGFGILLVSLSTMVFIRRWKNDIQKQLRRKHFRKNQGLLLEQLISSDENASDKTKIFSLDELEKATNNFDPTHILGHGGHGMVYKGILSDQRVVAIKRSKDIKEGEISQFINEVAILSQINHRNIVKLFGCCLETEVPLLVYDFIPNGSLFDILHSGSSNRFSLSWDDCLRIAVEAAGALCYLHSAASVSVFHRDVKSSNILLDANYTAKVADFGASRLVPIDQTHIVTNVQGTFGYLDPEYYHTGQLNEKSDVYSFGVVLVELLLRREPIFTTVSGSKQNLSNYFLWELKARPIKEIVAAQVCEEATEEEIKSVSSLAEMCLMLRSEDRPTMKQVEMTLQFLRTKRLTSSHAAAENDEEMQSLLHTRSEVSCESLANNLGVSANPESGNSHKCYSLEQEFISSIGLPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0307900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g24220 | SBH | 2.251413 | 2.234253 | 0.935653 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0307900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007400 | SBH | 0.402589 | 1.287094 | 4.405356 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008040 | RBH | 0.182152 | 0.381324 | 1.294446 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007800 | SBH | 0.435917 | 2.075533 | 3.899006 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007650 | SBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0226000 | SBH | 0.0295675 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007400 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0225500 | RBH | 0.449074 | 1.093232 | 3.2341035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007300 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007540 | RBH | 0.0 | 0.825154 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007610 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007430 | RBH | 0.356466 | 0.198420 | 0.751504 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007810 | RBH | 0.000000 | 0.601851 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007500 | RBH | 0.0 | 1.017611 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007610 | RBH | 0.0 | 0.0 | 0.340674 |
