Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g15560 | OGI:04027330 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:8462927-8464331 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATCAAATACCAATTCAAATTCTCAATGGCACATCACTTTATGTGTCCCTCGACTTGTCAAACAACTTACTTACAGGATATATTTCTTTCAACAAATTCTCTGGTGAAATTCCATCTTCACTTGGTCAATGTGTTTCTCTACTGTCTCTTGACTTGAAACATAACATGCTTAATGGAAGCATACCTCAGTTGTTAGGTCAACTAAAGTCCATTGTTCTGCTTGATCTTTCTCAAAATATGTTTGTCGGGCAAATTCCTGAGTTTCTTGTGAACTTCTCTTTTTTGAACCAACTTGATCTGTCGAACAACTACTTTGAAGGACCTATTCCAACTGGTGGCATCTTTCAGAGTAGCAGTGCAGTGATCTTAGATGGCAACACAAGACTATGCTCAAGTTCATCTTACTCTATATTTGGATTCCCAATTTGCCCAACTACAACACTTGCCAAAAGAAAGAATAATGCACACTTACTAATAATAGTGATTCCTCCTGTTACTATCGTCGTATTGTCATTCTTCTTTTTTATGGTGACACTTCTGAAGGGAAAGCAAGCGCATACGACTTCATGCTACAAAGAGACAATGAAGAAAGTATCATATGTTGACATCCTTAAGGCCACCAATTGGTTCTCCCCTGTCAACAAGATAAGCTCGAGTCATACTGGTTCGATATACATTGGAAGGTTCAGTTTGAAATAGACCTCATTGCCATCAAGCTGTTCCATCTTGATGAACTTGGCGCGTACAATAGCTTTCTTACTGAGTGTGAGGTGCTAAGAAACACCCGCCATCGCAACCTTGTTAAAGCAATCACCGTATGCTCCACGGTCGACCTAGAGAACAATGAATTCAAAGCTATAGTTTTGGAGTTCATGGCCAATGGAAGCTTGGACATGTGGGTTCATCCAAAGCTACATCAAAATAGTCCCAAGAGAGGTCTGAGCTTAGGACAGATGATAAGGATAGCTGCAGACGTGACTATATGCATAACCAGTTGACATCTCCTCTAACTCACTGTGATTTGAAGCCAAGCAATGTTCTATTGGACTATGATATGACCGCAATTGGTGATTTTGGCTCAGCAAAGTTTCTCAATGCAAGTTCTTGTAGCTCTGAATGCTTGGTTGGTGTCGGAGGAACAATCGGATATATCGCACCTGGTGAGTCTTGATTCCTATTTTATTCTTATTAGTTTCTCTTGCATTAAAATTTAACTGTTTCTTTCACAGAGTATGGAATGGGATACAAAATCTCGACCGGATGTGATGTGTACAGTTTTGGAGTGTTACTGCTTGAAATGCTCACTGGAATGAGACCGACAGATGCAATGTTCATCGACGGCATCAGCCTTCACAAGTTTGTTAGCATGGAAACCTTCACCTCTACATGCATTTTTCTCTAG
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| CDS seq | ATGGATCAAATACCAATTCAAATTCTCAATGGCACATCACTTTATGTGTCCCTCGACTTGTCAAACAACTTACTTACAGGATATATTTCTTTCAACAAATTCTCTGGTGAAATTCCATCTTCACTTGGTCAATGTGTTTCTCTACTGTCTCTTGACTTGAAACATAACATGCTTAATGGAAGCATACCTCAGTTGTTAGGTCAACTAAAGTCCATTGTTCTGCTTGATCTTTCTCAAAATATGTTTGTCGGGCAAATTCCTGAGTTTCTTGTGAACTTCTCTTTTTTGAACCAACTTGATCTGTCGAACAACTACTTTGAAGGACCTATTCCAACTGGTGGCATCTTTCAGAGTAGCAGTGCAGTGATCTTAGATGGCAACACAAGACTATGCTCAAGTTCATCTTACTCTATATTTGGATTCCCAATTTGCCCAACTACAACACTTGCCAAAAGAAAGAATAATGCACACTTACTAATAATAGTGATTCCTCCTGTTACTATCGTCGTATTGTCATTCTTCTTTTTTATGGTGACACTTCTGAAGGGAAAGCAAGCGCATACGACTTCATGCTACAAAGAGACAATGAAGAAAGTATCATATGTTGACATCCTTAAGGCCACCAATTGGTTCTCCCCTGTCAACAAGATAAGCTCGAGTCATACTGGTTCGATATACATTGGAAGCTTTCTTACTGAGTGTGAGGTGCTAAGAAACACCCGCCATCGCAACCTTGTTAAAGCAATCACCGTATGCTCCACGGTCGACCTAGAGAACAATGAATTCAAAGCTATAGTTTTGGAGTTCATGGCCAATGGAAGCTTGGACATGTGGGTTCATCCAAAGCTACATCAAAATAGTCCCAAGAGAGAGTATGGAATGGGATACAAAATCTCGACCGGATGTGATGTGTACAGTTTTGGAGTGTTACTGCTTGAAATGCTCACTGGAATGAGACCGACAGATGCAATGTTCATCGACGGCATCAGCCTTCACAAGTTTGTTAGCATGGAAACCTTCACCTCTACATGCATTTTTCTCTAG
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| Protein seq | MDQIPIQILNGTSLYVSLDLSNNLLTGYISFNKFSGEIPSSLGQCVSLLSLDLKHNMLNGSIPQLLGQLKSIVLLDLSQNMFVGQIPEFLVNFSFLNQLDLSNNYFEGPIPTGGIFQSSSAVILDGNTRLCSSSSYSIFGFPICPTTTLAKRKNNAHLLIIVIPPVTIVVLSFFFFMVTLLKGKQAHTTSCYKETMKKVSYVDILKATNWFSPVNKISSSHTGSIYIGSFLTECEVLRNTRHRNLVKAITVCSTVDLENNEFKAIVLEFMANGSLDMWVHPKLHQNSPKREYGMGYKISTGCDVYSFGVLLLEMLTGMRPTDAMFIDGISLHKFVSMETFTSTCIFL |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g15560 | LOC_Os04g15560.1 | Chr04 | 8462927 | 8464331 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATCAAATACCAATTCAAATTCTCAATGGCACATCACTTTATGTGTCCCTCGACTTGTCAAACAACTTACTTACAGGATATATTTCTTTCAACAAATTCTCTGGTGAAATTCCATCTTCACTTGGTCAATGTGTTTCTCTACTGTCTCTTGACTTGAAACATAACATGCTTAATGGAAGCATACCTCAGTTGTTAGGTCAACTAAAGTCCATTGTTCTGCTTGATCTTTCTCAAAATATGTTTGTCGGGCAAATTCCTGAGTTTCTTGTGAACTTCTCTTTTTTGAACCAACTTGATCTGTCGAACAACTACTTTGAAGGACCTATTCCAACTGGTGGCATCTTTCAGAGTAGCAGTGCAGTGATCTTAGATGGCAACACAAGACTATGCTCAAGTTCATCTTACTCTATATTTGGATTCCCAATTTGCCCAACTACAACACTTGCCAAAAGAAAGAATAATGCACACTTACTAATAATAGTGATTCCTCCTGTTACTATCGTCGTATTGTCATTCTTCTTTTTTATGGTGACACTTCTGAAGGGAAAGCAAGCGCATACGACTTCATGCTACAAAGAGACAATGAAGAAAGTATCATATGTTGACATCCTTAAGGCCACCAATTGGTTCTCCCCTGTCAACAAGATAAGCTCGAGTCATACTGGTTCGATATACATTGGAAGCTTTCTTACTGAGTGTGAGGTGCTAAGAAACACCCGCCATCGCAACCTTGTTAAAGCAATCACCGTATGCTCCACGGTCGACCTAGAGAACAATGAATTCAAAGCTATAGTTTTGGAGTTCATGGCCAATGGAAGCTTGGACATGTGGGTTCATCCAAAGCTACATCAAAATAGTCCCAAGAGAGAGTATGGAATGGGATACAAAATCTCGACCGGATGTGATGTGTACAGTTTTGGAGTGTTACTGCTTGAAATGCTCACTGGAATGAGACCGACAGATGCAATGTTCATCGACGGCATCAGCCTTCACAAGTTTGTTAGCATGGAAACCTTCACCTCTACATGCATTTTTCTCTAG
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| Protein seq | MDQIPIQILNGTSLYVSLDLSNNLLTGYISFNKFSGEIPSSLGQCVSLLSLDLKHNMLNGSIPQLLGQLKSIVLLDLSQNMFVGQIPEFLVNFSFLNQLDLSNNYFEGPIPTGGIFQSSSAVILDGNTRLCSSSSYSIFGFPICPTTTLAKRKNNAHLLIIVIPPVTIVVLSFFFFMVTLLKGKQAHTTSCYKETMKKVSYVDILKATNWFSPVNKISSSHTGSIYIGSFLTECEVLRNTRHRNLVKAITVCSTVDLENNEFKAIVLEFMANGSLDMWVHPKLHQNSPKREYGMGYKISTGCDVYSFGVLLLEMLTGMRPTDAMFIDGISLHKFVSMETFTSTCIFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0226340 | RBH | 1.189854 | 1.123004 | 1.424481 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g15660 | SBH | 1.860139 | 2.462513 | 0.856360 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0226340 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004980 | SBH | 0.244290 | 0.967602 | 2.680362 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005610 | SBH | 0.153115 | 0.776981 | 0.993871 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005200 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005050 | SBH | 0.056989 | 0.043205 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004930 | RBH | 0.0 | 0.0 | 2.347362 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0125800 | RBH | 0.048081 | 0.2694265 | 0.105891 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005070 | SBH | 0.0 | 0.047596 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0133400 | RBH | 0.318297 | 0.413695 | 1.0462685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004870 | SBH | 0.024502 | 0.107929 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004750 | RBH | 0.0 | 0.0 | 0.140373 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005100 | RBH | 0.101089 | 0.370662 | 0.578283 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004920 | RBH | 1.695326 | 36.677280 | 6.392571 |
