Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os04g15660 OGI:04027980 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr04:8515231-8518000
Gene Symbol -
DNA seq

ATGGAGCTCACTGGGGTCCTGCCTGATTGCATCGGCAACCTCACTTCTCTGCAAAGTCTGCTGCTTGCAAGAAACAACCTTGAAGGTACCATCCCTGAATCCTTGGCAAGAAGTTCATCACTCATAGAGCTAAATCTTTCGCGTAACAACCTATCAGGAGAGATCCCTCCTAGTTTTTTCAATGGCTCATCCAAGCTTGTCACTGTTGATCTACAAACGAATTCTTTTGTTGGCAAAATTCCACTTCCTCGTAACATGGGGACTCTTCGATTTCTTGACCTTACTGGAAACTTGCTTTCTGGAAGAATACCACCATCTCTAGCAAATATTTCATCTCTAAGTTCCATATTGCTAGGACAAAACAATTTATCAGGACCAATTCCAGAATCCTTGAGTCAAATCGCAAACCTGAATAAGCTAGATCTGAGTGGAAACAGATTATCAGGGTTTGTCCCAGTCACACTGTACAATAAGTCGTCGCTTGAATTCTTTGGTATAGGAAACAACAGTCTTATTGGAAAGATACCTCCTGACATTGGTCACACACTTCCAAATCTCAAATCGTTGGTCATGTCTCTGAATAGGTTTGATGGATCAATTCCAACTTCCTTGGCCAATGCATCAAACCTACAAATGCTTGATCTCTCTAGCAATCATCTAAGCGGATCTGTACCAGCATTAGGATCCTTGAGAAACTTGAACAAACTTTTGCTAGGAAGTAACAGGCTAGGAGCTGATATCTGGTCATTAATTACATCTCTGACAAATTGTACTCGATTATTAGAACTGTCGATGGATGGAAATAACCTGAACGGTAGCCTGCCAAAATCAATTGGCAACCTTTCAACACATCTACAAAAGTTGAAATTTGGCGGCAATCAAATAACAGGAATAATACCAGACGAGATAGGGAAGCTTATAAATCTCTCTCTGCTTGAGATCAACACAAACAAGCAGTCAGGGCAAATTCCCATGACAATTGGGAACTTGAAAAAATTGTTTATCTTGAACCTATCCATGAATGAATTGTCAGGACAAATCCCATCTACAATTGGTAACCTTTCACAACTTGGCCAGCTTTATCTTGATAATAATAACTTATCTGGTAAAATACCGGCAAATATAGGGCAGTGCATAAGGCTAGCAATGCTAAACTTATCAGTGAACAACCTTGATGGATCCATACCAATTGAACTCGTCAATATATCTTCTCTTTCCTTGGGTTTGGATCTTTCAAATAACAAACTTTCAGGGTTGATACCACAGCAAGTCGGTACATTGCACAATCTTGGCCACCTAAATTTTTCCAACAACCAGTTATCAGGCCAAATTCCTTCTTCACTCATACAGTGTGCTGTTCTATTGTCCCTTAACTTGGAAAACAACAACCTAAGTGGGAGTATACCAGAGTCATTAAGCCAACTGCCGGCAATTCAACAAATTGATCTCTCGGAAAACAATTTATCCGGTGTTGTTCCCACCGGAGGTATCTTTGGAAAACCAAATTCTGTAAACCTGAAAGGAAATAAAGGGTTGTGTGCACTTACATCCATATTTGCATTGCCGATTTGCCCCACCTCACCTGCTAAAAGGAAGAAGAACAATACACGATGGCTACTGATAGTGATTCTCATTCCAACCGTTACTGTTGCTTTATTCTCAATTCTATGCATAATGTTCACTCTTAGAAAGGAAAGTACAACCCAACAATCTTCAAACTACAAAGAAACAATGAAGAGGGTATCATATGGGGACATTCTTAAAGCCACCAATTGGTTCTCCCCAGTCAATAAAATCAGCTCAAGTCACACAGGATCAGTCTACATCGGACGATTCGAGTTTGATACAGACCTAGTTGCCATCAAGGTATTTCATCTTGATGAGCAAGGTGCACATAACAGCTTCTTTAGAGAGTGTGAAGTACTAAAATGCACTCGCCATCGCAACCTGGTCAAAGCAATAACCTTGTGCTCAACGGTGGATTTTGACAATAATGAATTCAAAGCTCTAATATATGAGTTCATGGCAAATGGCAACCTGGAAATGTTTGTACACCCAAAGCTGTACCAAGGCAGCCCAAAGAGGGTGCTAACGTTAGGTCAAAGGATAAGCATAGCGGCAGATATTGCTTCTGCTCTAGATTATCTCCACAACCAATTGGTACCTCCTCTGATCCACTGTGACTTGAAACCGAGTAATATTCTTTTGGATTATGACATGACCTCACGCATTGGTGATTTTGGGTCAGCTAAGTTTCTATCATCAAATTTTACTAAGCCAGAAGGATTTGTTGGTTTTGGAGGAACCATTGGATATATCCCACCTGGTCAGTTTTTCCATTCCAACAACTGGTTATTTGTTCAGCTTTACATCTATCTTTTTGTTGTTTTTAGCATACTTTCATTAATATTGTCTTACAGAATATGGGATGGGATGCAAAATCTCAACTGCTGGTGATGTGTACAGTTTTGGGGTGCTTCTACTTGAAATGTTCACAGCGAAGCGGCCAACTGACACACAATTCGGCAGCGACCTCAGCCTTCATAAGTATGTGGACTCTGCTTTCCCAAACACAATTGGTGAGGTTTTAGATCCCCATATGCCCCGAGATGAAAAGGTGGTACATGATCTGTGGATGCAAAGTTTCATCCTACCGATGATTGAAATTGGCCTTCTGTGTTCCAAGGAATCACCAAATGATAGGCCAGGAATGAGGGAAGTTTGTGCCAAAATTGCATCCATCAAACAGGAATTTGACAAAACCATGTGA

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CDS seq

ATGGAGCTCACTGGGGTCCTGCCTGATTGCATCGGCAACCTCACTTCTCTGCAAAGTCTGCTGCTTGCAAGAAACAACCTTGAAGGTACCATCCCTGAATCCTTGGCAAGAAGTTCATCACTCATAGAGCTAAATCTTTCGCGTAACAACCTATCAGGAGAGATCCCTCCTAGTTTTTTCAATGGCTCATCCAAGCTTGTCACTGTTGATCTACAAACGAATTCTTTTGTTGGCAAAATTCCACTTCCTCGTAACATGGGGACTCTTCGATTTCTTGACCTTACTGGAAACTTGCTTTCTGGAAGAATACCACCATCTCTAGCAAATATTTCATCTCTAAGTTCCATATTGCTAGGACAAAACAATTTATCAGGACCAATTCCAGAATCCTTGAGTCAAATCGCAAACCTGAATAAGCTAGATCTGAGTGGAAACAGATTATCAGGGTTTGTCCCAGTCACACTGTACAATAAGTCGTCGCTTGAATTCTTTGGTATAGGAAACAACAGTCTTATTGGAAAGATACCTCCTGACATTGGTCACACACTTCCAAATCTCAAATCGTTGGTCATGTCTCTGAATAGGTTTGATGGATCAATTCCAACTTCCTTGGCCAATGCATCAAACCTACAAATGCTTGATCTCTCTAGCAATCATCTAAGCGGATCTGTACCAGCATTAGGATCCTTGAGAAACTTGAACAAACTTTTGCTAGGAAGTAACAGGCTAGGAGCTGATATCTGGTCATTAATTACATCTCTGACAAATTGTACTCGATTATTAGAACTGTCGATGGATGGAAATAACCTGAACGGTAGCCTGCCAAAATCAATTGGCAACCTTTCAACACATCTACAAAAGTTGAAATTTGGCGGCAATCAAATAACAGGAATAATACCAGACGAGATAGGGAAGCTTATAAATCTCTCTCTGCTTGAGATCAACACAAACAAGCAGTCAGGGCAAATTCCCATGACAATTGGGAACTTGAAAAAATTGTTTATCTTGAACCTATCCATGAATGAATTGTCAGGACAAATCCCATCTACAATTGGTAACCTTTCACAACTTGGCCAGCTTTATCTTGATAATAATAACTTATCTGGTAAAATACCGGCAAATATAGGGCAGTGCATAAGGCTAGCAATGCTAAACTTATCAGTGAACAACCTTGATGGATCCATACCAATTGAACTCGTCAATATATCTTCTCTTTCCTTGGGTTTGGATCTTTCAAATAACAAACTTTCAGGGTTGATACCACAGCAAGTCGGTACATTGCACAATCTTGGCCACCTAAATTTTTCCAACAACCAGTTATCAGGCCAAATTCCTTCTTCACTCATACAGTGTGCTGTTCTATTGTCCCTTAACTTGGAAAACAACAACCTAAGTGGGAGTATACCAGAGTCATTAAGCCAACTGCCGGCAATTCAACAAATTGATCTCTCGGAAAACAATTTATCCGGTGTTGTTCCCACCGGAGGTATCTTTGGAAAACCAAATTCTGTAAACCTGAAAGGAAATAAAGGGTTGTGTGCACTTACATCCATATTTGCATTGCCGATTTGCCCCACCTCACCTGCTAAAAGGAAGAAGAACAATACACGATGGCTACTGATAGTGATTCTCATTCCAACCGTTACTGTTGCTTTATTCTCAATTCTATGCATAATGTTCACTCTTAGAAAGGAAAGTACAACCCAACAATCTTCAAACTACAAAGAAACAATGAAGAGGGTATCATATGGGGACATTCTTAAAGCCACCAATTGGTTCTCCCCAGTCAATAAAATCAGCTCAAGTCACACAGGATCAGTCTACATCGGACGATTCGAGTTTGATACAGACCTAGTTGCCATCAAGGTATTTCATCTTGATGAGCAAGGTGCACATAACAGCTTCTTTAGAGAGTGTGAAGTACTAAAATGCACTCGCCATCGCAACCTGGTCAAAGCAATAACCTTGTGCTCAACGGTGGATTTTGACAATAATGAATTCAAAGCTCTAATATATGAGTTCATGGCAAATGGCAACCTGGAAATGTTTGTACACCCAAAGCTGTACCAAGGCAGCCCAAAGAGGGTGCTAACGTTAGGTCAAAGGATAAGCATAGCGGCAGATATTGCTTCTGCTCTAGATTATCTCCACAACCAATTGGTACCTCCTCTGATCCACTGTGACTTGAAACCGAGTAATATTCTTTTGGATTATGACATGACCTCACGCATTGGTGATTTTGGGTCAGCTAAGTTTCTATCATCAAATTTTACTAAGCCAGAAGGATTTGTTGGTTTTGGAGGAACCATTGGATATATCCCACCTGAATATGGGATGGGATGCAAAATCTCAACTGCTGGTGATGTGTACAGTTTTGGGGTGCTTCTACTTGAAATGTTCACAGCGAAGCGGCCAACTGACACACAATTCGGCAGCGACCTCAGCCTTCATAAGTATGTGGACTCTGCTTTCCCAAACACAATTGGTGAGGTTTTAGATCCCCATATGCCCCGAGATGAAAAGGTGGTACATGATCTGTGGATGCAAAGTTTCATCCTACCGATGATTGAAATTGGCCTTCTGTGTTCCAAGGAATCACCAAATGATAGGCCAGGAATGAGGGAAGTTTGTGCCAAAATTGCATCCATCAAACAGGAATTTGACAAAACCATGTGA

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Protein seq

MELTGVLPDCIGNLTSLQSLLLARNNLEGTIPESLARSSSLIELNLSRNNLSGEIPPSFFNGSSKLVTVDLQTNSFVGKIPLPRNMGTLRFLDLTGNLLSGRIPPSLANISSLSSILLGQNNLSGPIPESLSQIANLNKLDLSGNRLSGFVPVTLYNKSSLEFFGIGNNSLIGKIPPDIGHTLPNLKSLVMSLNRFDGSIPTSLANASNLQMLDLSSNHLSGSVPALGSLRNLNKLLLGSNRLGADIWSLITSLTNCTRLLELSMDGNNLNGSLPKSIGNLSTHLQKLKFGGNQITGIIPDEIGKLINLSLLEINTNKQSGQIPMTIGNLKKLFILNLSMNELSGQIPSTIGNLSQLGQLYLDNNNLSGKIPANIGQCIRLAMLNLSVNNLDGSIPIELVNISSLSLGLDLSNNKLSGLIPQQVGTLHNLGHLNFSNNQLSGQIPSSLIQCAVLLSLNLENNNLSGSIPESLSQLPAIQQIDLSENNLSGVVPTGGIFGKPNSVNLKGNKGLCALTSIFALPICPTSPAKRKKNNTRWLLIVILIPTVTVALFSILCIMFTLRKESTTQQSSNYKETMKRVSYGDILKATNWFSPVNKISSSHTGSVYIGRFEFDTDLVAIKVFHLDEQGAHNSFFRECEVLKCTRHRNLVKAITLCSTVDFDNNEFKALIYEFMANGNLEMFVHPKLYQGSPKRVLTLGQRISIAADIASALDYLHNQLVPPLIHCDLKPSNILLDYDMTSRIGDFGSAKFLSSNFTKPEGFVGFGGTIGYIPPEYGMGCKISTAGDVYSFGVLLLEMFTAKRPTDTQFGSDLSLHKYVDSAFPNTIGEVLDPHMPRDEKVVHDLWMQSFILPMIEIGLLCSKESPNDRPGMREVCAKIASIKQEFDKTM

Function Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os04g15660 LOC_Os04g15660.1 Chr04 8515231 8518000 + MSU_osa1r7
CDS seq

ATGGAGCTCACTGGGGTCCTGCCTGATTGCATCGGCAACCTCACTTCTCTGCAAAGTCTGCTGCTTGCAAGAAACAACCTTGAAGGTACCATCCCTGAATCCTTGGCAAGAAGTTCATCACTCATAGAGCTAAATCTTTCGCGTAACAACCTATCAGGAGAGATCCCTCCTAGTTTTTTCAATGGCTCATCCAAGCTTGTCACTGTTGATCTACAAACGAATTCTTTTGTTGGCAAAATTCCACTTCCTCGTAACATGGGGACTCTTCGATTTCTTGACCTTACTGGAAACTTGCTTTCTGGAAGAATACCACCATCTCTAGCAAATATTTCATCTCTAAGTTCCATATTGCTAGGACAAAACAATTTATCAGGACCAATTCCAGAATCCTTGAGTCAAATCGCAAACCTGAATAAGCTAGATCTGAGTGGAAACAGATTATCAGGGTTTGTCCCAGTCACACTGTACAATAAGTCGTCGCTTGAATTCTTTGGTATAGGAAACAACAGTCTTATTGGAAAGATACCTCCTGACATTGGTCACACACTTCCAAATCTCAAATCGTTGGTCATGTCTCTGAATAGGTTTGATGGATCAATTCCAACTTCCTTGGCCAATGCATCAAACCTACAAATGCTTGATCTCTCTAGCAATCATCTAAGCGGATCTGTACCAGCATTAGGATCCTTGAGAAACTTGAACAAACTTTTGCTAGGAAGTAACAGGCTAGGAGCTGATATCTGGTCATTAATTACATCTCTGACAAATTGTACTCGATTATTAGAACTGTCGATGGATGGAAATAACCTGAACGGTAGCCTGCCAAAATCAATTGGCAACCTTTCAACACATCTACAAAAGTTGAAATTTGGCGGCAATCAAATAACAGGAATAATACCAGACGAGATAGGGAAGCTTATAAATCTCTCTCTGCTTGAGATCAACACAAACAAGCAGTCAGGGCAAATTCCCATGACAATTGGGAACTTGAAAAAATTGTTTATCTTGAACCTATCCATGAATGAATTGTCAGGACAAATCCCATCTACAATTGGTAACCTTTCACAACTTGGCCAGCTTTATCTTGATAATAATAACTTATCTGGTAAAATACCGGCAAATATAGGGCAGTGCATAAGGCTAGCAATGCTAAACTTATCAGTGAACAACCTTGATGGATCCATACCAATTGAACTCGTCAATATATCTTCTCTTTCCTTGGGTTTGGATCTTTCAAATAACAAACTTTCAGGGTTGATACCACAGCAAGTCGGTACATTGCACAATCTTGGCCACCTAAATTTTTCCAACAACCAGTTATCAGGCCAAATTCCTTCTTCACTCATACAGTGTGCTGTTCTATTGTCCCTTAACTTGGAAAACAACAACCTAAGTGGGAGTATACCAGAGTCATTAAGCCAACTGCCGGCAATTCAACAAATTGATCTCTCGGAAAACAATTTATCCGGTGTTGTTCCCACCGGAGGTATCTTTGGAAAACCAAATTCTGTAAACCTGAAAGGAAATAAAGGGTTGTGTGCACTTACATCCATATTTGCATTGCCGATTTGCCCCACCTCACCTGCTAAAAGGAAGAAGAACAATACACGATGGCTACTGATAGTGATTCTCATTCCAACCGTTACTGTTGCTTTATTCTCAATTCTATGCATAATGTTCACTCTTAGAAAGGAAAGTACAACCCAACAATCTTCAAACTACAAAGAAACAATGAAGAGGGTATCATATGGGGACATTCTTAAAGCCACCAATTGGTTCTCCCCAGTCAATAAAATCAGCTCAAGTCACACAGGATCAGTCTACATCGGACGATTCGAGTTTGATACAGACCTAGTTGCCATCAAGGTATTTCATCTTGATGAGCAAGGTGCACATAACAGCTTCTTTAGAGAGTGTGAAGTACTAAAATGCACTCGCCATCGCAACCTGGTCAAAGCAATAACCTTGTGCTCAACGGTGGATTTTGACAATAATGAATTCAAAGCTCTAATATATGAGTTCATGGCAAATGGCAACCTGGAAATGTTTGTACACCCAAAGCTGTACCAAGGCAGCCCAAAGAGGGTGCTAACGTTAGGTCAAAGGATAAGCATAGCGGCAGATATTGCTTCTGCTCTAGATTATCTCCACAACCAATTGGTACCTCCTCTGATCCACTGTGACTTGAAACCGAGTAATATTCTTTTGGATTATGACATGACCTCACGCATTGGTGATTTTGGGTCAGCTAAGTTTCTATCATCAAATTTTACTAAGCCAGAAGGATTTGTTGGTTTTGGAGGAACCATTGGATATATCCCACCTGAATATGGGATGGGATGCAAAATCTCAACTGCTGGTGATGTGTACAGTTTTGGGGTGCTTCTACTTGAAATGTTCACAGCGAAGCGGCCAACTGACACACAATTCGGCAGCGACCTCAGCCTTCATAAGTATGTGGACTCTGCTTTCCCAAACACAATTGGTGAGGTTTTAGATCCCCATATGCCCCGAGATGAAAAGGTGGTACATGATCTGTGGATGCAAAGTTTCATCCTACCGATGATTGAAATTGGCCTTCTGTGTTCCAAGGAATCACCAAATGATAGGCCAGGAATGAGGGAAGTTTGTGCCAAAATTGCATCCATCAAACAGGAATTTGACAAAACCATGTGA

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Protein seq

MELTGVLPDCIGNLTSLQSLLLARNNLEGTIPESLARSSSLIELNLSRNNLSGEIPPSFFNGSSKLVTVDLQTNSFVGKIPLPRNMGTLRFLDLTGNLLSGRIPPSLANISSLSSILLGQNNLSGPIPESLSQIANLNKLDLSGNRLSGFVPVTLYNKSSLEFFGIGNNSLIGKIPPDIGHTLPNLKSLVMSLNRFDGSIPTSLANASNLQMLDLSSNHLSGSVPALGSLRNLNKLLLGSNRLGADIWSLITSLTNCTRLLELSMDGNNLNGSLPKSIGNLSTHLQKLKFGGNQITGIIPDEIGKLINLSLLEINTNKQSGQIPMTIGNLKKLFILNLSMNELSGQIPSTIGNLSQLGQLYLDNNNLSGKIPANIGQCIRLAMLNLSVNNLDGSIPIELVNISSLSLGLDLSNNKLSGLIPQQVGTLHNLGHLNFSNNQLSGQIPSSLIQCAVLLSLNLENNNLSGSIPESLSQLPAIQQIDLSENNLSGVVPTGGIFGKPNSVNLKGNKGLCALTSIFALPICPTSPAKRKKNNTRWLLIVILIPTVTVALFSILCIMFTLRKESTTQQSSNYKETMKRVSYGDILKATNWFSPVNKISSSHTGSVYIGRFEFDTDLVAIKVFHLDEQGAHNSFFRECEVLKCTRHRNLVKAITLCSTVDFDNNEFKALIYEFMANGNLEMFVHPKLYQGSPKRVLTLGQRISIAADIASALDYLHNQLVPPLIHCDLKPSNILLDYDMTSRIGDFGSAKFLSSNFTKPEGFVGFGGTIGYIPPEYGMGCKISTAGDVYSFGVLLLEMFTAKRPTDTQFGSDLSLHKYVDSAFPNTIGEVLDPHMPRDEKVVHDLWMQSFILPMIEIGLLCSKESPNDRPGMREVCAKIASIKQEFDKTM

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 1.860139 2.462513 0.856360

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0227200 RBH 0.000000 0.000000 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g23890 SBH 13.558038 13.749624 1.823807
Nipponbare | IRGSP 1.0 | RAP-db Os04g0227200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0004980 SBH 0.244290 0.967602 2.680362
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0005610 SBH 0.153115 0.776981 0.993871
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0005230 SBH 0.295748 0.296784 3.057565
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0005050 SBH 0.056989 0.043205 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0004960 SBH 0.436180 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0128500 RBH 0.370506 3.8667275 0.0338725
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0005070 RBH 0.0 0.047596 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0134900 RBH 0.426296 3.8378665 0.018465
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0004870 RBH 0.024502 0.107929 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0005240 RBH 0.0 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0004990 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0004820 RBH 0.0 0.0 0.113852
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0005140 RBH 0.0 0.382693 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G005160 RBH 0.184732 0.0 0.105294
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0004980 RBH 0.0 4.528508 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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