Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g04410 | OGI:04004940 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:2098144-2101258 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAATTGGGAGCATGAACTGGAACTTGTTGTTTAAAGCTGGGATGACCGAAGGGAACTTAGAAACCCAGTTTGGTATATCCTCGCCCCAATCTGGAAATGCAAGCTTCATGCACTCCTTCAGAGCAGATGAAATGTGAAATTTTGTTTTTAAGTGTCTTTCTGCTGTATCCTCTTATCTTTTCGAGGCGTCTCTCAGTGGGTCAAGAATGCATATTTTTTTTCTCCATATCAAATGCGTATAGAGAATAGTGCAGTGGTTGAAGTAGTGGAATAAATATCTGCAAATTAATATTGACATTGCAAAAGTTAGTGGCCTGAACATTTGCACTTGATGTACTGAATTTTTCAAGATGCTGTTAATTATCAAACCAGGTGGCAACTAGGTACGACATATGGTATCAGGGAGTCATCTTTGAATGAGGGGAGATGGTCCTCTGGGTTCCACTGGTCATCACCAGCTGTTGCAAACATCTACAGCGCCATATTATGTTAAAACACACCATATTTAAAAATTGAAATAGTCGATCTAGAGTAATTGGAAGCACTTACTGCAAAATCTTGATTTAAGAAATGTCTCCAGCCTACAAAATCAGTTCCTCCAAATCTCTGTATCGCATCCGCTACTAATACTTGAACTGCAACATTGAATGTTTCTTCTTGCATTTGAGTGTCCAGCCGAATAGCCTATTGTATGTCATGTAGGCTTAATGACATAGGGACAGGTTGGGAGATGTGAACCCAGATTTTCCTGTTAAATGTGATATCTTTACAATTAGTGGTGAAAGAAAGGAACATTTCAGGTAGGTGGCTTACATTAGAGCTTCTGCATAAGCTATTGAAGTTGTATATGTGTATAAATCATCAAGTGTTTCAGATAGGTGGCTTACTTAAGAGCTTCTGCATCAGCGATTGAAATTGCATATGTGCATAAATCATCAAGTGCCTTCTGGTCATGCCTGACGAAAGAGTGTTGCTTGCTCAGAAATGGTGATTTCACCAAATGGCTTGGTTTAATCGACCTCTTTGGCCGATCGAATAGGATATCAGAAGGACCGCCAATAATTCTCCTCTTGGATTTAGGTGGGAGCTTTGTACATGCGTACTCCTCACGCCCCACTCGTCTCTTTCAACATAGAGTACGGAGAGAAACTACTAAGTTTTGTTTGTTGGTAACCTATTATGAGTCAAAACAGTAAGAGTGAGTCATATTATGTGCATGTGGTTGGTTATGAATGAAAATGAAAAACTGATACAGGCTTGTGGGTATCATTACCTCTATGCGAAGAGGGAGTTTTGTGCACTGCATTACCTTCTCCGGATTTGTCAGAGGCATCTACTGACTTTGAGATTGGCTGATCTGGGGTACGTGCTAAAAAGTTGAGTTCTTGTTCTTTGTCAGAGTCTTCAGCCACATTGGATATGTCATGACCTGGGGTACATGCCACCATGTTTACTTCTTCGATATCTTGTGTTATTCCTAGATTAAAGCTTGGGGGCTCGATGTCAGACCTGGCATCGTAGGTATGATCCACATGGATAGCCTGTGTACAGATATATCAACAATTCTTATAGAAAAATGGATTTTTTTCATATTGAATAGATTGACAAACTACATGAGATTGCACCTCTATTGCACCCGTATGATGGCCAATATTGTATTTTTCATCATGTTTGTTTCGCAGCTGAAACCCAATAAAAATGTCAATAGTCTGAAGTTTCTGCAGAAGAGAAATTTCAACAAGAATATACTACCGGCAGGAGAGTTGATTTTACCTTCATCTTTCCATACGCGGGGAAAGGATTCCGGTTCTTGAGAATTACATCCTTCTCAATGAATTCCGCTATCATGGAGTCATTGTACATGCCAATCCGTGGAATGTTTTCCTGCTCGGGAGTGTCCGTCCCGAAATCCAGATTGTCCAAATAAAAAAGCTGAGCAGTATAAATTATAGCATGTGAAAGATGTTGCGAGTATATTAGAAAGTAAAAGGCAAATAATTCGAACGAATAATAGGATAATTTCACCTGAGGTAGTATAATGCAGCCATTGATGTAACCAATGCTTTTCCGATGGCGTATTTTGTGTTGCAATGCTGCTGCTGCATCTTTGATGTCATGCAAAACAAATTCCGCCCAGTTGTACTTGTGAATATTTTCTACATCAACCAAAGCCTTCATATACCTTATAGATATGTGATTGTTAACAGATTGAGGAGCCAAGAATTTGGTTACAACGAAGATTATAAAAGCAGTCTTGAATACAATTTGTTCGTGAACAGTCATCGTCCTGTTAAATTTTTTCTCCAATATCCTCTGAATTGTTACAATGGTAAGTCCATCAAAGGAATCTTTCTCGAAGATTTCATACATATAAGCCTTAACATCTTTTACCTCGTTTTTTATTGCAGGCAAAATCTCCTTCCGTCCACAAGGGATTCCCAAAAGTAGGCTGACATCCTCACATGTCAAACAAATTTCATGTCTAGATCCCGTAAACAGATTACCTGATGATGGGTCTAGCTTGCACAGAATCCATGCTCCGAATTGCTTGTTCAGTTTAGTCAGCCTCATGGAAAGCAACCCATCAAACCCCATCTGTTTCACTAGCTCTTTTTGCTGATCACCAAAACTTGAGAACAGATCTGAGAGAATAGCAGGAGTGCACCTGGTGTAAATTTTTTCTTGTACTACCTTTTTACCCTTGATGCCACTTGTTTTTTTGGAATTTGATACTGCAGAACCAGGTAGCTGCTTCCGCTGATGCATCTTTCTTGCTTGAGCAGCATGAAGGGCTCTAGTGAAAACAGAACTAGAGCCACCACCACCTGAAACATTCGCACCTGCTGCAGGACTGCAAAGGTGCTGCAAATGCAAAAACATAAACAAAACAAACTATTAAGAGATACGATCAAAAAAAGACTCAAAGATTAGGAAAAAAAATCCATCCATGGCTACCGCGAGCTTTGACGGCGCCGGCGTTGGGGCGCTCGGCGTGCACGCGGCACATTGGGGCGCTCCTCTCCGGTAAGATTGGGGCGCTCCACTCCGGCAGCCTGCAGCTTGACACTGCTATACCGTACCAATGTCGGGTTGGTGCTGTTCATCGTCGCCAT
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| CDS seq | ATGGCGACGATGAACAGCACCAACCCGACATTGCACCTTTGCAGTCCTGCAGCAGGTGCGAATGTTTCAGGTGGTGGTGGCTCTAGTTCTGTTTTCACTAGAGCCCTTCATGCTGCTCAAGCAAGAAAGATGCATCAGCGGAAGCAGCTACCTGGTTCTGCAGTATCAAATTCCAAAAAAACAAGTGGCATCAAGGGTAAAAAGGTAGTACAAGAAAAAATTTACACCAGGTGCACTCCTGCTATTCTCTCAGATCTGTTCTCAAGTTTTGGTGATCAGCAAAAAGAGCTAGTGAAACAGATGGGGTTTGATGGGTTGCTTTCCATGAGGCTGACTAAACTGAACAAGCAATTCGGAGCATGGATTCTGTGCAAGCTAGACCCATCATCAGGTAATCTGTTTACGGGATCTAGACATGAAATTTGTTTGACATGTGAGGATGTCAGCCTACTTTTGGGAATCCCTTGTGGACGGAAGGAGATTTTGCCTGCAATAAAAAACGAGGTAAAAGATGTTAAGGCTTATATGTATGAAATCTTCGAGAAAGATTCCTTTGATGGACTTACCATTGTAACAATTCAGAGGATATTGGAGAAAAAATTTAACAGGACGATGACTGTTCACGAACAAATTGTATTCAAGACTGCTTTTATAATCTTCGTTGTAACCAAATTCTTGGCTCCTCAATCTGTTAACAATCACATATCTATAAGGTATATGAAGGCTTTGGTTGATGTAGAAAATATTCACAAGTACAACTGGGCGGAATTTGTTTTGCATGACATCAAAGATGCAGCAGCAGCATTGCAACACAAAATACGCCATCGGAAAAGCATTGGTTACATCAATGGCTGCATTATACTACCTCAGCTTTTTTATTTGGACAATCTGGATTTCGGGACGGACACTCCCGAGCAGGAAAACATTCCACGGATTGGCATGTACAATGACTCCATGATAGCGGAATTCATTGAGAAGGATGTAATTCTCAAGAACCGGAATCCTTTCCCCGCGTATGGAAAGATGAAGAAACTTCAGACTATTGACATTTTTATTGGGTTTCAGCTGCGAAACAAACATGATGAAAAATACAATATTGGCCATCATACGGGTGCAATAGAGGCTATCCATGTGGATCATACCTACGATGCCAGGTCTGACATCGAGCCCCCAAGCTTTAATCTAGGAATAACACAAGATATCGAAGAAGTAAACATGGTGGCATGTACCCCAGGTCATGACATATCCAATGTGGCTGAAGACTCTGACAAAGAACAAGAACTCAACTTTTTAGCACGTACCCCAGATCAGCCAATCTCAAAGTCAGTAGATGCCTCTGACAAATCCGGAGAAGCTGGTGATGACCAGTGGAACCCAGAGGACCATCTCCCCTCATTCAAAGATGACTCCCTGATACCATATGTCGTACCTAGTTGCCACCTGGAGTGCATGAAGCTTGCATTTCCAGATTGGGGCGAGGATATACCAAACTGGGTTTCTAAGTTCCCTTCGGTCATCCCAGCTTTAAACAACAAGTTCCAGTTCATGCTCCCAATTTGA
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| Protein seq | MATMNSTNPTLHLCSPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPGSAVSNSKKTSGIKGKKVVQEKIYTRCTPAILSDLFSSFGDQQKELVKQMGFDGLLSMRLTKLNKQFGAWILCKLDPSSGNLFTGSRHEICLTCEDVSLLLGIPCGRKEILPAIKNEVKDVKAYMYEIFEKDSFDGLTIVTIQRILEKKFNRTMTVHEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHDIKDAAAALQHKIRHRKSIGYINGCIILPQLFYLDNLDFGTDTPEQENIPRIGMYNDSMIAEFIEKDVILKNRNPFPAYGKMKKLQTIDIFIGFQLRNKHDEKYNIGHHTGAIEAIHVDHTYDARSDIEPPSFNLGITQDIEEVNMVACTPGHDISNVAEDSDKEQELNFLARTPDQPISKSVDASDKSGEAGDDQWNPEDHLPSFKDDSLIPYVVPSCHLECMKLAFPDWGEDIPNWVSKFPSVIPALNNKFQFMLPI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g04410 | LOC_Os04g04410.1 | Chr04 | 2098144 | 2101258 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGACGATGAACAGCACCAACCCGACATTGCACCTTTGCAGTCCTGCAGCAGGTGCGAATGTTTCAGGTGGTGGTGGCTCTAGTTCTGTTTTCACTAGAGCCCTTCATGCTGCTCAAGCAAGAAAGATGCATCAGCGGAAGCAGCTACCTGGTTCTGCAGTATCAAATTCCAAAAAAACAAGTGGCATCAAGGGTAAAAAGGTAGTACAAGAAAAAATTTACACCAGGTGCACTCCTGCTATTCTCTCAGATCTGTTCTCAAGTTTTGGTGATCAGCAAAAAGAGCTAGTGAAACAGATGGGGTTTGATGGGTTGCTTTCCATGAGGCTGACTAAACTGAACAAGCAATTCGGAGCATGGATTCTGTGCAAGCTAGACCCATCATCAGGTAATCTGTTTACGGGATCTAGACATGAAATTTGTTTGACATGTGAGGATGTCAGCCTACTTTTGGGAATCCCTTGTGGACGGAAGGAGATTTTGCCTGCAATAAAAAACGAGGTAAAAGATGTTAAGGCTTATATGTATGAAATCTTCGAGAAAGATTCCTTTGATGGACTTACCATTGTAACAATTCAGAGGATATTGGAGAAAAAATTTAACAGGACGATGACTGTTCACGAACAAATTGTATTCAAGACTGCTTTTATAATCTTCGTTGTAACCAAATTCTTGGCTCCTCAATCTGTTAACAATCACATATCTATAAGGTATATGAAGGCTTTGGTTGATGTAGAAAATATTCACAAGTACAACTGGGCGGAATTTGTTTTGCATGACATCAAAGATGCAGCAGCAGCATTGCAACACAAAATACGCCATCGGAAAAGCATTGGTTACATCAATGGCTGCATTATACTACCTCAGCTTTTTTATTTGGACAATCTGGATTTCGGGACGGACACTCCCGAGCAGGAAAACATTCCACGGATTGGCATGTACAATGACTCCATGATAGCGGAATTCATTGAGAAGGATGTAATTCTCAAGAACCGGAATCCTTTCCCCGCGTATGGAAAGATGAAGAAACTTCAGACTATTGACATTTTTATTGGGTTTCAGCTGCGAAACAAACATGATGAAAAATACAATATTGGCCATCATACGGGTGCAATAGAGGCTATCCATGTGGATCATACCTACGATGCCAGGTCTGACATCGAGCCCCCAAGCTTTAATCTAGGAATAACACAAGATATCGAAGAAGTAAACATGGTGGCATGTACCCCAGGTCATGACATATCCAATGTGGCTGAAGACTCTGACAAAGAACAAGAACTCAACTTTTTAGCACGTACCCCAGATCAGCCAATCTCAAAGTCAGTAGATGCCTCTGACAAATCCGGAGAAGCTGGTGATGACCAGTGGAACCCAGAGGACCATCTCCCCTCATTCAAAGATGACTCCCTGATACCATATGTCGTACCTAGTTGCCACCTGGAGTGCATGAAGCTTGCATTTCCAGATTGGGGCGAGGATATACCAAACTGGGTTTCTAAGTTCCCTTCGGTCATCCCAGCTTTAAACAACAAGTTCCAGTTCATGCTCCCAATTTGA
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| Protein seq | MATMNSTNPTLHLCSPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPGSAVSNSKKTSGIKGKKVVQEKIYTRCTPAILSDLFSSFGDQQKELVKQMGFDGLLSMRLTKLNKQFGAWILCKLDPSSGNLFTGSRHEICLTCEDVSLLLGIPCGRKEILPAIKNEVKDVKAYMYEIFEKDSFDGLTIVTIQRILEKKFNRTMTVHEQIVFKTAFIIFVVTKFLAPQSVNNHISIRYMKALVDVENIHKYNWAEFVLHDIKDAAAALQHKIRHRKSIGYINGCIILPQLFYLDNLDFGTDTPEQENIPRIGMYNDSMIAEFIEKDVILKNRNPFPAYGKMKKLQTIDIFIGFQLRNKHDEKYNIGHHTGAIEAIHVDHTYDARSDIEPPSFNLGITQDIEEVNMVACTPGHDISNVAEDSDKEQELNFLARTPDQPISKSVDASDKSGEAGDDQWNPEDHLPSFKDDSLIPYVVPSCHLECMKLAFPDWGEDIPNWVSKFPSVIPALNNKFQFMLPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0517900 | SBH | 1.345377 | 0.845570 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39490 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0517900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020490 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001410 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001390 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018790 | SBH | 0.398189 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019030 | SBH | 0.031512 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018750 | SBH | 0.412376 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018900 | SBH | 0.264230 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001520 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
