Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g57890 | OGI:03092480 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:32974276-32976913 | ||||||||
| Gene Symbol | SAP6, OsSAP6 | ||||||||||
| DNA seq | TTATCACCAACCAGGATCCTTCTAAACAAGCTCTGAATAAGAGGTATTGACACTGGATAACAACATTATGGCACCAAAAGTATTATATCTACAATACACACAGTAATCTATCTAAACAAACTGTAGCAGGTGATAATGGAAGCCTGGCGAACCTTGGGCATAATAATATAATCAGTAGAATTGCATACTGAATAAAATATAAATATTTACATTATTCATACTGCAAATAAGGAGAAGTGCACCTGTGCCAATCAAAGTTCCCACGCAAACACCAAGAAATATAGCCTTGAAGGCGTGCCCAAGCGCATTGAGCAGTGCTCCAGTGCTAGAGAGACATCAATCCGTGGTGTTTGTCGAAGGCGTTCATTGGCAAAGCAAATCCCAGGAGAATGATAGATACATCCAACCCCTGAAGTATAATCTTGAAGTAAACTTGACAGATCAAGTAACACCATGAGGAAATAAACGAGCATCGCTCCTCTAGAACCGCCATCAGATTTTGGTGATCTTGTCAGCTTTCACAAGAGGATTCTGTTTGGCAATCTGCTCCCTCCCGACCTGCTTGTAATCAAATGTGCATTTGTGTGAATCGGCATAGCGGTGCATTGAACAGAAGGTGCCTCCGCAGCGGCACTTGAATCCTGTCAACCCAACCTTCTTCCGGCATGATAAGCAACGGTTACTGGGTGGCTTTGGTGTATCCTCCTCCATTACTTGTTTCCCATCTGCAACTGAACCAGACCCTCCATCTGTGACTTCTGTCACCAAAGGTGTGGAAGACAATGAAGCAAGAGGTTTCTTCTCCACAACAGTGGCCACTGTCTTGGCCTTAACGGTGTCCCTATAACACTTTGAGCACATGTTTTCTGTCATCCGGCTGCCAAAGAAGCCACAGTTGTTAACGCACAATATAGGGGCCTCAGGTGTGTGGACTCCAGTCTCCTCTGCCTCCTTTTTCCAGCTCTCTTGTGCCATTGTAAGGAACACCAACTGCACCTTCAATAGAAAATAACAACTTAATCATTAATCAATAAACTTCAAGACCATTCGACATGGCCATTGCACCAAATGTATAAGGTAGTTGGAACTAGGTAAGAGTCAGATAGCCATCACCCCTTCAGCAAGAATTTTCTCACAAGTGTGGAGTATAACTTTATTACATGATATAATTGAGTAGACCATGCATGACAAGACAACATCCCAACCTACAGAACAAATTTAGTTGGTTGTACCTGCCAATAAGGTTCAAGGTCACAAAGAATAGTGCTAATAAAACTCCATTGCATCTGATCACCCAAGGGCAATAACAATTGGGAGGAACTGCCCTGTCTGTGACAATAACTCATCCCCACATACAACACGAATTTAGTAATCCATTCCTATCATTGAGATGAAATGCCACAGGTACTCACTGAGTATTACCAAATAAGTGGCATATTTATGGACAGAGGAACTGCCTTAGCAGTTAGCACATGAGTTTGATCAGACCTCAACAATTGACACAGACTAGTTCATAACCATATACCTGATTGGGCTACTCCCATTCTCAAAAGGTATTCCCTGGTGATATATCAACAGAAAAAAATATGCATATATATGGATAGAATCTAGATTGGACTACTTCACTTTTCAATATGTATTACCTGGTGCTAAAAATATTCCCTAGCACGCACATATGTGGGAGATAAACTAAAAATGTGCCTATTTGCAATAAGTTGTGTGTGAGACCAGCCCAGCAAAACAGAGAGGGTGCCATGATGAGCTAAACCAATGCAAACAAATGAAGCGATGATATATTAAGCTGGTACAATGTATTGTCGTTTCCATACACATGAAAATACCTTGTACAATCACCAATTTCCATATTCGTCGTCGGCAAGCAACACCACACCATTGTGAATTCCCATGCTTAGATCACAAAAATTCGATGCAATTGCCTTCATGATCATTGCAATCTCTGCTGACTAAACCGCAAGAAACCTCAACAAGACAACAATATCCTGTCCACAGAAGTGAACACCACAAGAAAGCCATCCTACCAGCTAAACGCACTTGGTATGTTGGTCTGCAAATCTCAGCTACGCCACATGGAAGAAGCTACGTCCGGCGTGTAATCAAGGCCATAAACAAACAATTACCCCATCCGGAAACTAATCTCTCTGCGTAAATTTACCCCCATGTTTTCATACCCAAAAAGTCAAAGGCAATTCATCCATCATCATAGCAGGCACACCAAATTGAGACATACTAATCCGTGCCTAACCATCAACCACGCCAATCTACTCATCGAATCCTAGATCGACCATCAAATCCTAGATCGACCTCAACCAAGACTAAAACATCTTACAATTCAACAAACCAACCATACCAGCAAGCAAAATTACATGCCACCACCAAATAGCAAACAATCTCAGATCGAGCCTTACCGCGAGGAGGACGAGGGGTTCGCCGGAGAGGCCCGATCGATCGGATCTGCGGGGGGCAGCCTACGCGGATTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTTCCCCAACCTGTTCTTCCAGGAGAGAACGGAGTTTTTTTTTTTTCCTTTCTGCTTTTCGCGTCGCCTTCTCTTTTTTTTTTTCCTTCCTTTTTTTTTTCTTCTTCGGGCGA
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| CDS seq | ATGGCACAAGAGAGCTGGAAAAAGGAGGCAGAGGAGACTGGAGTCCACACACCTGAGGCCCCTATATTGTGCGTTAACAACTGTGGCTTCTTTGGCAGCCGGATGACAGAAAACATGTGCTCAAAGTGTTATAGGGACACCGTTAAGGCCAAGACAGTGGCCACTGTTGTGGAGAAGAAACCTCTTGCTTCATTGTCTTCCACACCTTTGGTGACAGAAGTCACAGATGGAGGGTCTGGTTCAGTTGCAGATGGGAAACAAGTAATGGAGGAGGATACACCAAAGCCACCCAGTAACCGTTGCTTATCATGCCGGAAGAAGGTTGGGTTGACAGGATTCAAGTGCCGCTGCGGAGGCACCTTCTGTTCAATGCACCGCTATGCCGATTCACACAAATGCACATTTGATTACAAGCAGGTCGGGAGGGAGCAGATTGCCAAACAGAATCCTCTTGTGAAAGCTGACAAGATCACCAAAATCTGA
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| Protein seq | MAQESWKKEAEETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPLASLSSTPLVTEVTDGGSGSVADGKQVMEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQVGREQIAKQNPLVKADKITKI |
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| Function | Zinc finger A20 and AN1 domain-containing stress-associated protein 6 [UniProtKB/Swiss-Prot:Q852K5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g57890 | LOC_Os03g57890.1 | Chr03 | 32974276 | 32976913 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCACAAGAGAGCTGGAAAAAGGAGGCAGAGGAGACTGGAGTCCACACACCTGAGGCCCCTATATTGTGCGTTAACAACTGTGGCTTCTTTGGCAGCCGGATGACAGAAAACATGTGCTCAAAGTGTTATAGGGACACCGTTAAGGCCAAGACAGTGGCCACTGTTGTGGAGAAGAAACCTCTTGCTTCATTGTCTTCCACACCTTTGGTGACAGAAGTCACAGATGGAGGGTCTGGTTCAGTTGCAGATGGGAAACAAGTAATGGAGGAGGATACACCAAAGCCACCCAGTAACCGTTGCTTATCATGCCGGAAGAAGGTTGGGTTGACAGGATTCAAGTGCCGCTGCGGAGGCACCTTCTGTTCAATGCACCGCTATGCCGATTCACACAAATGCACATTTGATTACAAGCAGGTCGGGAGGGAGCAGATTGCCAAACAGAATCCTCTTGTGAAAGCTGACAAGATCACCAAAATCTGA
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| Protein seq | MAQESWKKEAEETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPLASLSSTPLVTEVTDGGSGSVADGKQVMEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQVGREQIAKQNPLVKADKITKI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g57890 | LOC_Os03g57890.2 | Chr03 | 32974276 | 32976911 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCACAAGAGAGCTGGAAAAAGGAGGCAGAGGAGACTGGAGTCCACACACCTGAGGCCCCTATATTGTGCGTTAACAACTGTGGCTTCTTTGGCAGCCGGATGACAGAAAACATGTGCTCAAAGTGTTATAGGGACACCGTTAAGGCCAAGACAGTGGCCACTGTTGTGGAGAAGAAACCTCTTGCTTCATTGTCTTCCACACCTTTGGTGACAGAAGTCACAGATGGAGGGTCTGGTTCAGTTGCAGATGGGAAACAAGTAATGGAGGAGGATACACCAAAGCCACCCAGTAACCGTTGCTTATCATGCCGGAAGAAGGTTGGGTTGACAGGATTCAAGTGCCGCTGCGGAGGCACCTTCTGTTCAATGCACCGCTATGCCGATTCACACAAATGCACATTTGATTACAAGCAGGTCGGGAGGGAGCAGATTGCCAAACAGAATCCTCTTGTGAAAGCTGACAAGATCACCAAAATCTGA
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| Protein seq | MAQESWKKEAEETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPLASLSSTPLVTEVTDGGSGSVADGKQVMEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQVGREQIAKQNPLVKADKITKI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g57890 | LOC_Os03g57890.3 | Chr03 | 32974276 | 32975464 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCACAAGAGAGCTGGAAAAAGGAGGCAGAGGAGACTGGAGTCCACACACCTGAGGCCCCTATATTGTGCGTTAACAACTGTGGCTTCTTTGGCAGCCGGATGACAGAAAACATGTGCTCAAAGTGTTATAGGGACACCGTTAAGGCCAAGACAGTGGCCACTGTTGTGGAGAAGAAACCTCTTGCTTCATTGTCTTCCACACCTTTGGTGACAGAAGTCACAGATGGAGGGTCTGGTTCAGTTGCAGATGGGAAACAAGTAATGGAGGAGGATACACCAAAGCCACCCAGTAACCGTTGCTTATCATGCCGGAAGAAGGTTGGGTTGACAGGATTCAAGTGCCGCTGCGGAGGCACCTTCTGTTCAATGCACCGCTATGCCGATTCACACAAATGCACATTTGATTACAAGCAGGTCGGGAGGGAGCAGATTGCCAAACAGAATCCTCTTGTGAAAGCTGACAAGATCACCAAAATCTGA
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| Protein seq | MAQESWKKEAEETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPLASLSSTPLVTEVTDGGSGSVADGKQVMEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQVGREQIAKQNPLVKADKITKI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.032214 | 3.119066 | 4.563294 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0792900 | RBH | 3.493012 | 4.907670 | 18.840544 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07350 | RBH | 3.946112 | 5.398742 | 5.550876 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0792900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0037820 | SBH | 1.440879 | 46.900146 | 13.450528 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0037510 | SBH | 1.643125 | 12.242498 | 5.944865 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0037560 | SBH | 2.036286 | 18.441265 | 12.299129 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0037870 | RBH | 0.393412 | 0.898722 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0037390 | RBH | 10.506262 | 41.343384 | 27.953392 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0563400 | SBH | 0.0126835 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0037190 | SBH | 0.801936 | 3.035801 | 4.856494 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0564900 | RBH | 28.7800115 | 28.2227305 | 17.6970255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0037730 | SBH | 1.179090 | 0.583152 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0037730 | SBH | 1.363888 | 53.677124 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0037340 | SBH | 10.786758 | 37.547714 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0037400 | SBH | 2.395340 | 2.532367 | 2.762871 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0037420 | RBH | 0.210924 | 17.588417 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037200 | SBH | 2.439715 | 7.450448 | 12.902216 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0036980 | SBH | 5.657808 | 20.841438 | 33.031956 |
