Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0037730 | OGI:03092490 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:36119035-36127624 | ||||||||
| Gene Symbol | SAP6, OsSAP6, SAP7, OsSAP7, OsiSAP7 | ||||||||||
| DNA seq | ctgaataagaggtattgacactggataacaacattatggcaccaaaagtattatatctacaatacacacagtaatctatctaaacaaactgtagcaggtgataatggaagcctggcgaaccttgggcataataatataatcagtagaattgcatactgaataaaatataaatatttacattattcatactgcaaataaggagaagagcacctgtgccaatcaaagttcccacgcaaacaccaagaaatatagccttgaaggcgtgcccaagcgcattgagcagtgctccagtgctagagagacatcaatccgtggtgtttgtcgaaggcgttcattggcaaagcaaatcccaggagaatgatagatacatccaacccctgaagtataatcttgaagtaaacttgacagatcaagtaacaccatgaggaaataaacgagcatcgctcctctagaaccgccatcagattttggtgatcttgtcagctttcacaagaggattctgtttggcaatctgctccctcccggcctgcttgtaatcaaatgtgcatttgtgtgaatcggcatagcggtgcattgaacagaaggtgcctccgcagcggcacttgaatcctgtcaacccaaccttcttccggcatgataagcaacggttactgggtggctttggtgtatcctcctccattacttgtttcccatctgcaactgaaccagaccctccatctgtgacttctgccaccaaaggtgtggaagacaatgaagcaagaggtttcttctccacaacagtggccactgtcttggccttaacggtgtccctataacactttgagcacatgttttctgtcatccggctgccaaagaagccacagttgttaacgcacaatataggggcctcaggtgtgtggactccagtctcctctgcctcctttttccagctctcttgtgccattgtaaggaacaccaactgcaccttcaatagaaaataacaacttaatcattaatcaataaacttcaagaccattcgacatggccattgcaccaaatgtataaggtagttggaactaggtaagagtcagatagccatcaCcccttcagcaagaattttctcacaagtgtggagtataactttattacatgatataattgagtagaccatgcatgacaagacaacatcccaacctacagaacaaatttagttggttgtacctgccaataaggttcaaggtcacaaagaatagtgctaataaaactccattgcatctgatcacccaagggcaataacaattgggaggaactgccctgtctgtgacaataactcatccccacatacaacacgaatttagtaatccattcctatcattgagatgaaatgccacaggtactcactgagtattaccaaataagtggcatatttatggacagaggaactgccttagcagttagcacatgagtttgatcagacctcaacaattgacacagactagttcataaccatatacctgattgggctactcccattctcaaaaggtattccctggtgatatatcaacagaaaaaaaatatgcatatatatggatagaatctagattggactacttcacttttcaatatgtattacctggtgctaaaaatattccctagcacgcgcatatgtgggagataaactaaaaatgtgcctatttgcaataagttgtgtgtgagaccagcccagcaaaacagagagggtgccatgatgagctaaaccaatgcaaacaaatgaagcgatgatatattaagctggtacaatgtattgtcgtttccatacacatgaaaatacattgtacaatcaccaatttccatattcgtcgtcggcaagcaacaccacaccattgtgaattcccatgcttagatcacaaaaattcgatgcaattgccttcatgatcattgcaatctctgctgactaaaccgcaagaaacctcaacaagacaacaatatcctgtccacagaagtgaacaccacaagaaagccatcctaccagctaaacgcacttggtatgttggtctgcaaatctcagctacgccacatggaagaagctacgtccggcgtgtaatcaaggccataaacaaacaattaccccatccggaaactaatctctctgcgtaaatttacccccatgttttcatacccaaaaagtcaaaggcaattcatccatcatcatagcaggcacaccaaattgagacatactaatccgtgcctaaccatcaaccacgccaatctactcatcgaatcctagatcgaccatcaaatcctagatcgacctcaaccaagactaaaacatcttacaattcaacaaaccaaccataccagcaagcaaaattacatgccaccaccaaatagcaaacaatctcagatcgagccttaccgtgaggaggacgaggggttcgccggagaggcccgatcgatcggatctgcggggggcagcctacgcggattctcctctcctctcctctccttccccaacctgttcttccaggagagaacggagttttttttttttcctttctgcttttcgcgtcgccttctcTtttttttttttccttccttttttttttcttcttcgggcgagctgcgtggcgtcggggtttgtatataaaggccacccatttccgcattcggacacggctttttcaacttttcgcttcgattttttagaagtggggatgattaaatttgattatgtgattaggggggtggttgggttgggctgaaaggattaattaattaaattaagctaggtggaatggtagtgtaatctggtggggattaggagccggatgcttctagacgcgaagattcaacatgagggcgattgttgtggggcccatttgaaatcactttgtgggacccagctgaagctggatgattgagtgtttaatgtgtacaggtggggctcgtcgcctgaacacggctggttaaattcggatttagttgaaagttttagtagttgtcacaagtggagcttcattaaggtccaatttgttggttaagcattgcacaactcaagctagcgcagatgatattaatgtacaattcgatatggttagaggtaatcccattgaattgttgtcgcagtcagtggtggagccagaatttatataattctgtctttatattctagttttaaaagttttaaaataaaattttaatgaatatttaggatcaagagtagggcggcagcgctagctaccctactcctgtctccgcccctagttacagcggctacggtaattgaatgccgctgcagtttgcaataattttaagttgctgttgtgacagccatcgtagccgatcaattgttgctacatcaatgtatgtagttgcatgtagcttcatgtatactccctccggtttcattttaattgacaatttggacaatgatacggtctacaaaatgtacctttaaccttatttttctattataatatacataagaaatagatgaatgcttacattataatgttttgaaagacaaatctatatatgttgttctagtttctttgaattaaatatttttgaagttattgatgatcaaagttattaaagtttgaccttaaccttgtccaaaacgttaattattatagaaccggagggagtacttgttaagtgctttagatttgtcctaaattggcaaccacgcttatcatggtcttgctaccttgttcttcgggtcaacattgggagcactatagacgtgctcatcatctttcacactggcagttgccttctcttctccatagccatcggttcatcgtgttgtttgtgtgctatagagaagctacttccaccttccaagtcgcacgccgaagaaatcacaagttcacagcaggctcaacatggcggcaaccgtgcttgagtcggtggccatctcgtcgtttggggtactttcatatcagcaatcgggattgagaagcctgatgcattgacgtcaacaaaaagtcaatgaaacaaattctttttcattttcaaagcgcaaactaccttaattattgttatttgtgttttaggaatcttatgtttggagataaaattgtttcgagaaacctcatatttttatgtagggtaaaatacacatatactccgcatgcattacaaatgttttaacaattattatagatgaacatatttattaaattaacgatataaccttgcagctagggttttatgaaatattttgctaagaaactcacgaaacaaattgtacaacttagtttttacgttattgatgtctatggttttgtgaatttactgtttataaaaaatcaaaggaatatggaatgtaagtatggttgtgtttagttacacgctagaattggaagtttgaagaaattataacgatgtgacgaaaaagttaaaagtttgtgtgtagaaaagtttgatgtgacagaaaagttagaagtttgaagaagaaaaattagaatataaaccgggcatatgtaaccttgattaaagaggaagaaaagaaaaaaaatataacctaaggccaactacgggcccactaagatgggccgcgtcacgtccgcggcccgcaacccgcgtcggggcggtgagtgggccgcggagaaacggcagcgtacgtcgtgaagatgaccgcggcggccagcggcaaaggggggacggcggagctgagccgatcacgtaggcaggggcagcataacaTaacccaacctcacggtgtaattttgatcaaaaggatcaaaatcttttgtcggatcgattagatctgctggttgcaattgctactacaggctgcacagtacctataaatcttgcatctcaggggaaactaaattaacagtgaacaatccattgtcatcgaggaactttgagcaattgagcattgctcccaaggcttccgttccaaaaagaaagaaagAaaaaaggtagcgtatgctgccaaggggtgcggagtgtgctaaagcgagcaattcattcagcgtgattgcattatttatagctggctgcaaacgctttcaccaaactaggacttttttttacataatggaagcttttattgaactcagtcaattacattaaggtgatacaattatcctgagaacactagttgtcaagagattcaattgagatattgggattggtagaactttttttttagataatggattatattaaacccggcctctacaccttgcgagggtgtacacagccaaaaccatagtcacgagtacaaaagactcctctcattacatagggacacacaaataaaagtttaacaaacgattaaagagaaatggaggctaaacttcaattcttcttcgaaaattccatccaaaggtagagaagaactccataactcgcttctccaaaattctgcacttgacttgagcttcttctccttcaacttttttaagaagcaaagaccaaagccttgcccaatgaattgccttgaatattacctgtaagaaagaaatatgattgtagccgttaaagactatgtcattcctactaagccacaaagcccaacaaattgccgctatgccctcccaagtttgtcttttgagtttaggttcaaaaccattcaaccaattaccaaacatatgagcgcaacttctgagttgtctaaccccgaaagtaaaataaaccgcactccatatgtatctaaccattatacaatcaaagaaaaggtgttgtatcaactctttagagttacaaaagctacacaataagctacccttccatcttctcttagctagattatcctttgttagaatcacccctttattcaaatactataggaaaatcttaatctttaatggaattattagcttccaaattaaAGatttcctaggtattactccatcaaacataagtaacttatacatagagtttacggtaaacaacccttgtttattagttttccatatgaattggtcaagatgacttgtcaggttaacattagccactttcgagacaattacataccaatcttccaagtttttcccaactatcgctcttctaaaggacatattcaacagtatcgtttccaaaaccttagcaactactgtattcttattctgaaccaggttgtacaaattagaaaattcTttctcaagagatttgtttcccatccaacaatcctcccaaaatctaacttgtttcccatttctcaccttaaagtgtccaagtaattggaatgattcttttaccgtcatgagactagcccagaaataagaatctccttgttgctcttgaacctgtagaatggttttttttttgccaaatatttttttctaagcaaattttgccaaattccctcttcattgattaacttaaagatccatttactaagcatgcacttattttgaatctctaagttctgaatccctaaacctccacactccttgggtttgcaaagtacaatccatttggccagcatatacttctttttatgttcatcacattgccaaaaaaatatggatctataatagttcagtttctttaagatacctttaggtatctcaaagaatgaaagcatatacattgctagactgcttagcactgaattgatgaggattaacctccctcctgttgacagaaactttcctttccagctactgagctttttttcgaatctatcctctaactccttccagtcattgtttgccagccttttatagtgcattggaaggcctagatatctaaaagggtaggaccctatcttgcagccaaatagaaaagaaaatgtattttctacttccttagcttttccgtaacagaacatctcactcttatgaaaattgatttttaagcctgaaagcttctcataggcacttagtaccattttaatatttttggcttcttctacatcattttccataaagataatggtatcatctgcatattgcaaaattgacagcccgttatctaccaaattcggtattacacctcgtgtcattcctctttcagtcgacctattgattataattgccaacatatccgccaccaaattaaataaaattggtgataagggatccccttgtcgcaaccctttttttgtttgaaaaaaattcccgatttcatcgttgacttttacagctacacttcctcctgtcactatctgctctatccatttgcaccaacgttccgaaaagcctttcatcctcatggtctgctgaagaaatttccagtctaccttatcatatgctttttcgaaatctagcttgagaatgaccccatctaacttcttcctatgcatctcatgtaacgtttcatgaaggataatggccccttccatgatatttcttccttttaaaaaggcagtctgtgaaggtcttatgactttttgtgctactagagcaatcctatttgtcataatcttagtaaagaccttgaaacttacattaagtaagcatatcggtttatattgttgaatctgccttgcctccttattcttgggtagaagagtaataataccaaaattcaaattattgagagaaagattgcccctatgaaagtctctaaagactgccattaggtcatccttaattacctcccagaacacttgataaaactccgccggaaaaccatcaggccctagggctttattatgttccatttgaaatatagcatttttcacctcttcTtttgaaaactcactcgtaagcaactcattttccgctacgggattggtagaactagaacatcgatcaaattcagcttgaagattgtatagcaaatcagcaagtgactgtttgacactaaaaaattatgtgcaagccggtaagcagggattgaaccagagcctgcttgtgtcaatttgtactatttgatgcgtgcatcaatcaacaacaagcttaacaaatggatgatttctatcacctaaacaaagatctgttcttttggctcataaataaagattattgtcaatgggaacatgtttcttcagtgaaaacaaatactaaattacatgcaagtattcaatcttacatgtttcagaacagatcactgagcttgctactctatgtttgcttgtgctcgtcgatggttttgcagattgctgttggattccatggaagagagagaggagagctcaaatccgggtggccagcttgtcggcgacgacgagcgggttctgcttggcgatctgctccttcccggcgctcttgtagtcgaagccgcagccgtgggcgtcggcgtggcggtggccgccacagaagttgccgccgcaccggcacttgaaccccgtcagccccaccttcttccggcacgccgcgcaccggttaggcgccgtagcagccttcgccgccggctgctctgccgccgccgatgaagatgacgcgacggcgacggggacgacggcgctcatcctggccttcttcgtcgtcgtctccgccacgccaaccagctcgaggtcgctgttggctgccgccgcctcctccacggcgtcgttgtccgcggagtgctcgcggtagcaccgggagcacatgttgttggtggcctcggagccgaagaatccgcagccggtgacgcacatggcggcgccggcgccggagccgcaggccgtctcgtcatcggggcacttccgcttcatcgacgccat
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| CDS seq | atggcgtcgatgaagcggaagtgccccgatgacgagacggcctgcggctccggcgccggcgccgccatgtgcgtcaccggctgcggattcttcggctccgaggccaccaacaacatgtgctcccggtgctaccgcgagcactccgcggacaacgacgccgtggaggaggcggcggcagccaacagcgacctcgagctggttggcgtggcggagacgacgacgaagaaggccaggatgagcgccgtcgtccccgtcgccgtcgcgtcatcttcatcggcggcggcagagcagccggcggcgaaggctgctacggcgcctaaccggtgcgcggcgtgccggaagaaggtggggctgacggggttcaagtgccggtgcggcggcaacttctgtggcggccaccgccacgccgacgcccacggctgcggcttcgactacaagagcgccgggaaggagcagatcgccaagcagaacccgctcgtgcagttggtgttccttacaatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggcccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtgctcaaagtgttatagggacaccgttaaggccaagacagtggccactgttgtggagaagaaacctcttgcttcattgtcttccacacctttggtggcagaagtcacagatggagggtctggttcagttgcagatgggaaacaagtaatggaggaggatacaccaaagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaagtgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcacatttgattacaagcaggccgggagggagcagattgccaaacagaatcctcttgtgaaagctgacaagatcaccaaaatctga
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| Protein seq | MASMKRKCPDDETACGSGAGAAMCVTGCGFFGSEATNNMCSRCYREHSADNDAVEEAAAANSDLELVGVAETTTKKARMSAVVPVAVASSSSAAAEQPAAKAATAPNRCAACRKKVGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIAKQNPLVQLVFLTMAQESWKKEAEETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPLASLSSTPLVAEVTDGGSGSVADGKQVMEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQAGREQIAKQNPLVKADKITKI |
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| Function | Zinc finger A20 and AN1 domain-containing stress-associated protein 6 [UniProtKB/Swiss-Prot:Q852K5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0037730 | OsLima_03g0037730.01 | Chr03 | 36119035 | 36127624 | - | NAM | ||
| CDS seq | atggcgtcgatgaagcggaagtgccccgatgacgagacggcctgcggctccggcgccggcgccgccatgtgcgtcaccggctgcggattcttcggctccgaggccaccaacaacatgtgctcccggtgctaccgcgagcactccgcggacaacgacgccgtggaggaggcggcggcagccaacagcgacctcgagctggttggcgtggcggagacgacgacgaagaaggccaggatgagcgccgtcgtccccgtcgccgtcgcgtcatcttcatcggcggcggcagagcagccggcggcgaaggctgctacggcgcctaaccggtgcgcggcgtgccggaagaaggtggggctgacggggttcaagtgccggtgcggcggcaacttctgtggcggccaccgccacgccgacgcccacggctgcggcttcgactacaagagcgccgggaaggagcagatcgccaagcagaacccgctcgtgcagttggtgttccttacaatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggcccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtgctcaaagtgttatagggacaccgttaaggccaagacagtggccactgttgtggagaagaaacctcttgcttcattgtcttccacacctttggtggcagaagtcacagatggagggtctggttcagttgcagatgggaaacaagtaatggaggaggatacaccaaagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaagtgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcacatttgattacaagcaggccgggagggagcagattgccaaacagaatcctcttgtgaaagctgacaagatcaccaaaatctga
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| Protein seq | MASMKRKCPDDETACGSGAGAAMCVTGCGFFGSEATNNMCSRCYREHSADNDAVEEAAAANSDLELVGVAETTTKKARMSAVVPVAVASSSSAAAEQPAAKAATAPNRCAACRKKVGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIAKQNPLVQLVFLTMAQESWKKEAEETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPLASLSSTPLVAEVTDGGSGSVADGKQVMEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQAGREQIAKQNPLVKADKITKI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0037730 | OsLima_03g0037730.02 | Chr03 | 36119158 | 36121625 | - | IsoSeq | ||
| CDS seq | gaagaaaaaaaaaaggaaggaaaaaaaaaaaAgagaaggcgacgcgaaaagcagaaaggaaaaaaaaaaaactccgttctctcctggaagaacaggttggggaaggagaggagaggagaggagaatccgcgtaggctgccccccgcagatccgatcgatcgggcctctccggcgaacccctcgtcctcctcacggtgcagttggtgttccttacaatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggcccctatattgtgcgttaacaactgtggcttctttggcagcc
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| Protein seq | EEKKKEGKKKKRRRREKQKGKKKNSVLSWKNRLGKERRGEENPRRLPPADPIDRASPANPSSSSRCSWCSLQWHKRAGKRRQRRLESTHLRPLYCALTTVASLAA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr03 | 36119998 | 36127624 | - | OsLima_03g0037730.02 | OsLima_03g0037730.02,OsLima_03g0037730.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.179090 | 0.583152 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0793000 | RBH | 0.866469 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g57900 | RBH | 0.528047 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0793000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0037820 | RBH | 1.440879 | 46.900146 | 13.450528 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0037510 | RBH | 1.643125 | 12.242498 | 5.944865 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0037560 | RBH | 2.036286 | 18.441265 | 12.299129 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0037870 | RBH | 0.393412 | 0.898722 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0037390 | RBH | 10.506262 | 41.343384 | 27.953392 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0563400 | SBH | 0.0126835 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0037190 | RBH | 0.801936 | 3.035801 | 4.856494 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0564900 | RBH | 28.7800115 | 28.2227305 | 17.6970255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004220 | RBH | 1.120605 | 0.477844 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0037730 | RBH | 1.363888 | 53.677124 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0037340 | RBH | 10.786758 | 37.547714 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0037400 | RBH | 2.395340 | 2.532367 | 2.762871 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0037420 | RBH | 0.210924 | 17.588417 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037200 | RBH | 2.439715 | 7.450448 | 12.902216 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0036980 | RBH | 5.657808 | 20.841438 | 33.031956 |
