Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g56140 | OGI:03089480 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:31986702-31991788 | ||||||||
| Gene Symbol | OSH43, OsH43, H43, - | ||||||||||
| DNA seq | ATGGAGAGCTTCGCCAGTCTCGCAGGAGGTGGCAGCAGCAGCACCACAGCTCGGTTGCCGGAGCTGATCCCGCCGGAGAACCCGGACCGCATCTCGCCGCCCCCGTTGCTGTACCAGCTGCTCGCCGGCTCGGCGTCGTCGGCGCGGCATGGGCATGGACACCACCACGGCGGCGGTGGCGGCGCAGCAGCAGCAGCTGTGCAGGGACTACAGGTCTCGCCGGCGGGCGCGGAGGCGGCGATGAAGGCCGAGATCATGTCGCATCCGCAGTACTCGGCTCTCCTCGCCGCCTACTTAGGCTGCAAAAAGGTTAGCTAGCTAGCAGAAGTATATATATTTTAAACCCATGCAGACACAGAGGTTGTGTTTAGTTTCACGTCAAAATTATAAGTTTAAAAAAATTAGAACGATACGATAGAAAAATTAAAAGTTTGAAAAAAAAAGTTAGAATCTAAACACGCCATGTGCTTTGTTTGACTGGTTCATTTTGTTGGATTTTTATCAGGTCGGGGCGCCGCCGGATGTACTGACCAAGCTCACGGCCGTGCCGGCGGCGCAGCAGCAGCTGGACGCAGCCGACGGCCACCCTCGTCGCCGGCACGAGCCACGGCGTGATGACGACGTCCCGGATCATCAGCTCGATCAGTTCATGGTCTCGACATAGCAATTAATTTGCTCGCATGCATGCTAGCTGCTTAGTACATGTGTTCCGCTGTTCTTCTGATCGATCGAGATTCGAGACACGGGGATCTGATCTTGTTATTATCACAGGACGCGTACTGCAGCATGCTGACGAGGTACAGGGAGGAGCTGGAGCGGCCGATCCTGGAAGCCGCGGAGTTCTTCAGCTTGATTCGATCGCTGGTGAGTACTCCCTCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTTTACCGTTCGTCTTATTAAAAAAAATTTGTGAAATATGTAAAACTATATGTGTACATGAAAGTATATTTAACAATGAATCAAATGATGTGAAAAGAATAAATAATTACTTAAATTTTCTGAATAAGACAAATGGTCAAACACGTACTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGAGAGAGTATTTTATACGCCTCTTCTATACAGAAATTTCCATATTGGGAAATGGTATATCACTCTATGGCTGATTGGAGTTAGTCTTTTTTTTTTCTTGGTCACCTCCTCTTTGGACTCGTATGGTTGTTGCAGCTGTTATTTCTTAAGGCTGCTAATTTGAGGCTTTAATTTGTTTATTAGGGTAGGGGAGATAAGTTTTGCAGCCTAGCTTGTCGCATGCAATTAGATCACTTTCACAAAAATTGGAGCTTAACAAAGTATACTTGAGCAGTATGATCGATAAACTAGCAAGCATATCATGAGGTCACACGGCCGGTGAGGCTGTGAGCTGAGCTCCAGGGTTTCCAAATTGCATGCCATGCATGGTTCTCCTGCTTTCCTGTCCCCAATATCTCTGCAGGTCCTTGTCTAACCTACATTTTTGCTCTCTTATCATGTCTTCCGCTGGTAGTCACAGAGAAATGGCTAGACGATCTTTGTTTTCAACATAGACGATTTATGTTACTATTAAGGGCCAAAAGGTAAATTAAATGAACCATCAAAGTTTGCAGAACATAGTGGCCAAATTGAGGTGTAAGTAACATCTAGCTGGTTGAAAACATGAGTGGCGGTGGATGACAGAATGAGTGGCCGGTGGGCCTATTGTCATTGTGCCTCCGTGAGTGTAATTAGTTTACGGACCTCAAATCCTGGATCGAGTCTTGGCTGTCGGACATAGTACCCTGTGCACTTTGTCTCATGGCCTGGAGTGGGGTAAGGATCCAGCTATATATATTACTCGTAGACTATTGATAAGTGCGTATTACCATCTAGTTGTGTCCTTTCAAATGCAGTTGTTTCCAAACATTATTGAGCACTTTCCATAGCCATAGGAATAGATTTCCAGATCAGAACTCTTTCTTATATATATACAGACATCAATCGAGTGCCAAATAATTGAAAGAATGAAAGCAGCTAGCATGGTGACCAGCATGCATATCATATTGTATTTTGTTGAAACCTAGTTCAATAATTTTGTCTATATGAACTAGTGTAGTTTTTTACACTAGTAATTGCATATATACAAGGTGGTGTTTCATAAGACGACTAATATGGCAAAATTTATGAAATTCACTATCCGTACAAATCCTGGATAATATATATATATGGAAGAATTATCTGGTTTCTTATATATTTAGTCTGCAAAAATGTCATTCAGCTATTCCCCTACCGATGAGACATTTTTTTTTGTGTCTACACATATATTCCTGTCTACAGATGGTCTCTTTTGAGAATTGAATTTTTTTTCTAATTTGTTGGATATTTGTTTGACTGGTGCAACAATTCATCCCCTTACACATGATTTGATCTATTCCATATACTCAGATGAATTGTTGGAATCCTACTATTTCACCAGTATGGATCATACTAAGATATTAGCTATTGACTTTTGTTTGATCGTTCGTCTTATTAAAATAATATATAAATATAAATTATTTTTTGTGACTTGTTTATTATTAAAGGTACATCAAACATAAATTATATTTTTACATATTTGCACTATTTTTTTAAGGTGAATGGACAGACGTTATGTTCAAAAGTCAACAATGTTATATATTTAAAAAAAAGGAGGAGGATTGCATTAGGAGTTCGTAAGAGTGATAAACACGGCTTGTTTCTTAGTGGATGATTATCTAACTTAACATATATATCATCCACAACAATAGAGAAAATATAGTCTATGCACACATTTACTTTAACCTGCAGTGTCTTGTACTAGCATCAATACTAACTAGACTTTGCATCCTTGATGTCATTTCTTGTCTCAATGTTGTCATTTCAGAAATATCCATTTAACTGTTCATAAGTAGCACTTTTCATGCTGTTAATTACTTTTTGAATCATATTCTGGCTGCATGCTGCTGTACTGTCTGGAAATATTCCAATGTCAACAGAATGTGTATGTGCACACATGCAGCATAAATAGCTCCCAGAAAGTTTCAAATAAATTTTTATATTTGATGGAAAATTTGAACTGCATGCTATATATATTGTCCTATGAATTGTAGTTGTGTAATATATCTGTTATTTATATGATTTTTTTTATCTTCTGAAATCAAGGGTACGGTGAATAAATTTTAGTGGAACTAGTTTAGTCTTTGTAAGTATTTGGCGTTATTTCATTTTTAAAATCAATAATTTTAATTGTCTATATGAACTAGTGTAGTTTTTACACTAATAATTGCATATATACAAGGTGGTGTTTCATAAGACGACTAATATGGCAAAATTTATGAAATTCACTATCCGTACAAATCATGGATCTATATATTACAATCGCTTTGAGATGAATGCAAATTAGGATGGGCACAATTTTTTCATAGCACGGTGGAATGGTTTCTCTTGTCATCATCGTTTTGAACTCATCTTTATTATGTGCCTGCTAATTATATTTTAAAACCGTTCTCTAAGTGTTCACACAATATCACTAAATTTTTATTTTTTTATTTTTGCCTTCGAATAAACAGAACACAAGCAGGCCTTGTAATATTTAGTATATATTCTTGTCATAGCTTTTCCCTATGAATCAAAATGAATATCCTTGTCTCAAATTGAACGGTATGACGGCTGTTTGACTAGTCTAGTTTTCTGCTTGAAATTTGGAAATACTGTGTTTAGATGAGCAAGGACAATTATTGGGTGCGCAGCTGAGTGTACAACATGTTCAGGCCTTCAGGGTTGCACTGTTGCTTGCTTCAATCCACTAGGAGTCCTAGTAAACACAAAGAATTAATTGACTGACTGGTGGCCTGGTGGGGCTGACCGATTGAGTAATACACAGTACTACCATTATACTCTCCGGGGCAATCTAAGGCCGGGTTTAGTTCTAAAATTTTTCTTTAAACTTTTAACTTTTTCATCACATTAAAACTTTTCTACATACATAAACTTTCAAACTTTTCCGTCACATCGTTCCAATTTCAACAAAACTTCCAATTTTAGCGTGAACTAAACACACCCTAACCAGAATTGTAACTATGCATAATCTACTCGATCTCTCACACCTCCCTTCATATGAGGTTTACCTGCTGTGACGCACGCAGTCATGTAATTTTTTAATTATTTTGATAGCACATCATGTTAAACAATAATTAACCTTTTTGAGCTGCTGTTTTTAACAGACAGTAATTGTGAAGGCACGGGATCATCCGAGGAAGAGCAAGACACGAGCTGTCCTGAGGCTGAGGAGATCGACCCTAGTGACAAGCAGCTGAAGCACCAGCTTCTGATGAAGTACGGTGGCTCGTTGGGCGATCTCCGGCAGGCGTTCTCCAAGAGGACCAAGAAAGGGAAGCTCCCCAAGGAGGCCAGGCTGAAGCTTCTGCACTGGTGGGAGCTGCACTACGACAAATGGCCCTATCCCTCCGTACGCACGCATATATATGCTTCCCATTTGATCAATTCAACCACATTTTTCTGCACCAAACTCGATCTTATGAAAATGCGTGAACTTCTCGGGTGTACATGTGTGTATGAGCAGGAGGTGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAGCAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGCCGGTGGCAGGCATGACCTTCCCGACAGTGGAAGCTGCCGGAGGCGGCTTCCGACACTCCGGCCACGACGGCGGCCTTGCGGCGGCGGCGGCGGCGGCGGCGCTGCCGCTGTACATGGGCAGCTGGCCGTTCGTTGTGGACGGCATGTACCGGCTCGGGTCTTGAAGCCTCTGGGGATCGCATGATGTTCCCATGATCAGCCTGTGGGACGGTGAAATGGAAAAACTGGTGAATCTTCATCACGATCTTTCCTCTCATTTTTTTTTCTTTTTTCCTTTTTGTGTGTGATAAAAGCTCAGATGTACCACGTACTACTGTCTGCTTCTTCGCAAATGGATATGTAATTGAAAGCTTTAATTCTAAACA
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| CDS seq | ATGGAGAGCTTCGCCAGTCTCGCAGGAGGTGGCAGCAGCAGCACCACAGCTCGGTTGCCGGAGCTGATCCCGCCGGAGAACCCGGACCGCATCTCGCCGCCCCCGTTGCTGTACCAGCTGCTCGCCGGCTCGGCGTCGTCGGCGCGGCATGGGCATGGACACCACCACGGCGGCGGTGGCGGCGCAGCAGCAGCAGCTGTGCAGGGACTACAGGTCTCGCCGGCGGGCGCGGAGGCGGCGATGAAGGCCGAGATCATGTCGCATCCGCAGTACTCGGCTCTCCTCGCCGCCTACTTAGGCTGCAAAAAGGTCGGGGCGCCGCCGGATGTACTGACCAAGCTCACGGCCGTGCCGGCGGCGCAGCAGCAGCTGGACGCAGCCGACGGCCACCCTCGTCGCCGGCACGAGCCACGGCGTGATGACGACGTCCCGGATCATCAGCTCGATCAGTTCATGCATGCTGACGAGGTACAGGGAGGAGCTGGAGCGGCCGATCCTGGAAGCCGCGGAGTTCTTCAGCTTGATTCGATCGCTGACAGTAATTGTGAAGGCACGGGATCATCCGAGGAAGAGCAAGACACGAGCTGTCCTGAGGCTGAGGAGATCGACCCTAGTGACAAGCAGCTGAAGCACCAGCTTCTGATGAAGTACGGTGGCTCGTTGGGCGATCTCCGGCAGGCGTTCTCCAAGAGGACCAAGAAAGGGAAGCTCCCCAAGGAGGCCAGGCTGAAGCTTCTGCACTGGTGGGAGCTGCACTACGACAAATGGCCCTATCCCTCCGTACGCACGCATATATATGCTTCCCATTTGATCAATTCAACCACATTTTTCTGCACCAAACTCGATCTTATGAAAATGCGTGAACTTCTCGGGTGTACATGTGTGTATGAGCAGGAGGTGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAGCAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGCCGGTGGCAGGCATGACCTTCCCGACAGTGGAAGCTGCCGGAGGCGGCTTCCGACACTCCGGCCACGACGGCGGCCTTGCGGCGGCGGCGGCGGCGGCGGCGCTGCCGCTGTACATGGGCAGCTGGCCGTTCGTTGTGGACGGCATGTACCGGCTCGGGTCTTGA
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| Protein seq | MESFASLAGGGSSSTTARLPELIPPENPDRISPPPLLYQLLAGSASSARHGHGHHHGGGGGAAAAAVQGLQVSPAGAEAAMKAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQQLDAADGHPRRRHEPRRDDDVPDHQLDQFMHADEVQGGAGAADPGSRGVLQLDSIADSNCEGTGSSEEEQDTSCPEAEEIDPSDKQLKHQLLMKYGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSVRTHIYASHLINSTTFFCTKLDLMKMRELLGCTCVYEQEVEKMTLAQTTGLDQKQISNWFINQRKRHWKPTPVAGMTFPTVEAAGGGFRHSGHDGGLAAAAAAAALPLYMGSWPFVVDGMYRLGS |
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| Function | Homeobox protein knotted-1-like 9 [UniProtKB/Swiss-Prot:Q10EC6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g56140 | LOC_Os03g56140.1 | Chr03 | 31986702 | 31991779 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGCTTCGCCAGTCTCGCAGGAGGTGGCAGCAGCAGCACCACAGCTCGGTTGCCGGAGCTGATCCCGCCGGAGAACCCGGACCGCATCTCGCCGCCCCCGTTGCTGTACCAGCTGCTCGCCGGCTCGGCGTCGTCGGCGCGGCATGGGCATGGACACCACCACGGCGGCGGTGGCGGCGCAGCAGCAGCAGCTGTGCAGGGACTACAGGTCTCGCCGGCGGGCGCGGAGGCGGCGATGAAGGCCGAGATCATGTCGCATCCGCAGTACTCGGCTCTCCTCGCCGCCTACTTAGGCTGCAAAAAGGTCGGGGCGCCGCCGGATGTACTGACCAAGCTCACGGCCGTGCCGGCGGCGCAGCAGCAGCTGGACGCAGCCGACGGCCACCCTCGTCGCCGGCACGAGCCACGGCGTGATGACGACGTCCCGGATCATCAGCTCGATCAGTTCATGCATGCTGACGAGGTACAGGGAGGAGCTGGAGCGGCCGATCCTGGAAGCCGCGGAGTTCTTCAGCTTGATTCGATCGCTGACAGTAATTGTGAAGGCACGGGATCATCCGAGGAAGAGCAAGACACGAGCTGTCCTGAGGCTGAGGAGATCGACCCTAGTGACAAGCAGCTGAAGCACCAGCTTCTGATGAAGTACGGTGGCTCGTTGGGCGATCTCCGGCAGGCGTTCTCCAAGAGGACCAAGAAAGGGAAGCTCCCCAAGGAGGCCAGGCTGAAGCTTCTGCACTGGTGGGAGCTGCACTACGACAAATGGCCCTATCCCTCCGTACGCACGCATATATATGCTTCCCATTTGATCAATTCAACCACATTTTTCTGCACCAAACTCGATCTTATGAAAATGCGTGAACTTCTCGGGTGTACATGTGTGTATGAGCAGGAGGTGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAGCAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGCCGGTGGCAGGCATGACCTTCCCGACAGTGGAAGCTGCCGGAGGCGGCTTCCGACACTCCGGCCACGACGGCGGCCTTGCGGCGGCGGCGGCGGCGGCGGCGCTGCCGCTGTACATGGGCAGCTGGCCGTTCGTTGTGGACGGCATGTACCGGCTCGGGTCTTGA
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| Protein seq | MESFASLAGGGSSSTTARLPELIPPENPDRISPPPLLYQLLAGSASSARHGHGHHHGGGGGAAAAAVQGLQVSPAGAEAAMKAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQQLDAADGHPRRRHEPRRDDDVPDHQLDQFMHADEVQGGAGAADPGSRGVLQLDSIADSNCEGTGSSEEEQDTSCPEAEEIDPSDKQLKHQLLMKYGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSVRTHIYASHLINSTTFFCTKLDLMKMRELLGCTCVYEQEVEKMTLAQTTGLDQKQISNWFINQRKRHWKPTPVAGMTFPTVEAAGGGFRHSGHDGGLAAAAAAAALPLYMGSWPFVVDGMYRLGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g56140 | LOC_Os03g56140.2 | Chr03 | 31986702 | 31991788 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGCTTCGCCAGTCTCGCAGGAGGTGGCAGCAGCAGCACCACAGCTCGGTTGCCGGAGCTGATCCCGCCGGAGAACCCGGACCGCATCTCGCCGCCCCCGTTGCTGTACCAGCTGCTCGCCGGCTCGGCGTCGTCGGCGCGGCATGGGCATGGACACCACCACGGCGGCGGTGGCGGCGCAGCAGCAGCAGCTGTGCAGGGACTACAGGTCTCGCCGGCGGGCGCGGAGGCGGCGATGAAGGCCGAGATCATGTCGCATCCGCAGTACTCGGCTCTCCTCGCCGCCTACTTAGGCTGCAAAAAGGTCGGGGCGCCGCCGGATGTACTGACCAAGCTCACGGCCGTGCCGGCGGCGCAGCAGCAGCTGGACGCAGCCGACGGCCACCCTCGTCGCCGGCACGAGCCACGGCGTGATGACGACGTCCCGGATCATCAGCTCGATCAGTTCATGCATGCTGACGAGGTACAGGGAGGAGCTGGAGCGGCCGATCCTGGAAGCCGCGGAGTTCTTCAGCTTGATTCGATCGCTGACAGTAATTGTGAAGGCACGGGATCATCCGAGGAAGAGCAAGACACGAGCTGTCCTGAGGCTGAGGAGATCGACCCTAGTGACAAGCAGCTGAAGCACCAGCTTCTGATGAAGTACGGTGGCTCGTTGGGCGATCTCCGGCAGGCGTTCTCCAAGAGGACCAAGAAAGGGAAGCTCCCCAAGGAGGCCAGGCTGAAGCTTCTGCACTGGTGGGAGCTGCACTACGACAAATGGCCCTATCCCTCCGAGGTGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAGCAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGCCGGTGGCAGGCATGACCTTCCCGACAGTGGAAGCTGCCGGAGGCGGCTTCCGACACTCCGGCCACGACGGCGGCCTTGCGGCGGCGGCGGCGGCGGCGGCGCTGCCGCTGTACATGGGCAGCTGGCCGTTCGTTGTGGACGGCATGTACCGGCTCGGGTCTTGA
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| Protein seq | MESFASLAGGGSSSTTARLPELIPPENPDRISPPPLLYQLLAGSASSARHGHGHHHGGGGGAAAAAVQGLQVSPAGAEAAMKAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQQLDAADGHPRRRHEPRRDDDVPDHQLDQFMHADEVQGGAGAADPGSRGVLQLDSIADSNCEGTGSSEEEQDTSCPEAEEIDPSDKQLKHQLLMKYGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSEVEKMTLAQTTGLDQKQISNWFINQRKRHWKPTPVAGMTFPTVEAAGGGFRHSGHDGGLAAAAAAAALPLYMGSWPFVVDGMYRLGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.063135 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0771500 | SBH | 0.0 | 0.0 | 1.482966 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0771500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036320 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035990 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036070 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036370 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035860 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0545000 | SBH | 0.021468 | 0 | 0.5604125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035660 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0545700 | SBH | 0.0827005 | 0 | 0.1027895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036140 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035890 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035850 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035470 | RBH | 0.0 | 0.0 | 0.000000 |
