Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0771500 | OGI:03089460 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:31964738-31970261 | ||||||||
| Gene Symbol | OSH43, OsH43, H43 | ||||||||||
| DNA seq | CTCTTCACATTCCCTGCATCCATCCATCTCAACCACCACCACCTCATTTCAGGAGATCATCTCCTCCTTTTCTTTGCTAGGGTTTGTTTGCCATAACTACTATCTATCGCCTCTTCTTCACCTCACCTGTCCTGTCGGCCATGGAGAGCTTCGCCAGTCTCGCAGGAGGTGGCAGCAGCAGCACCACAGCTCGGTTGCCGGAGCTGATCTCGCCGGAGAACCCGGACCACATCTCGCCGCCCCCGTTGCTGTACCAGCTGCTCGCCGGCCCGGAGTCGTCGGCGCGGCAGCATGGGCATGATGGGCATCACCACGGCGGCGGTGGCGGCGAAGCAGCAGCAGCAGCTGTGCAGGGACAGGTCTCGCCGGCAGGCGCGGAGGCGGCGGTCAAGGCCGAGATCATGTCGCATCCACAGTACTCGGCTCTCCTAGCCGCCTACTTAGGCTGCAAAAAGGTGTAGTAGCTAAGCTAGCAGATGCATATATTTAAACCCATGCAGATACAGACGACAACACGCCATGTGCTGACCAAGCTCACGGCCGTGCCGGATGTACTGACCAAGTTGATTTTGTTGGTTTTTTTATCAGGTCGGGGCGCCGCCGGATGTACTGACCAAGCTCACGGCTGTGCCGGCGGCGCAGCAGCTGGACGAAGCCGACGGCCACCCTCGTCGCCGGCACGAGCCACAGCGTGATGACGACCCGGATCAGCTCGATCAGTTCATGGTATCAACATATATAGATCATCAACTCCTTTGCTCGCATGCGTGCATATATATAGACAGACACACACACATATATATCCACTGTTCTTCTGATCGATCGACATGGGATCTGATCTTGTCATCACAGGACGCGTACTGCAGCATGCTGACGAGGTACAGGGAGGAGCTGGAGCGGCCGATCCTGGAAGCCGCGGAGTTCTTCAGCAGGGTGGAGACGCAGCTCGATTCGCTCGCTGGTGAGTATTTTATACGCCTCTTCTCTACAAAGATTTGCAGCTTGCCATATTGGGAAATGCCGAAATGGTATCTCACTTTATGGAATTGGAGTTAGTTTTTTTTTTGTCACCTCTTTGGACTCATGTGGCTGTTGCAGCAGTATTTCTTAAGGCTGCTAATCTCAGGCTTTAATATGTTTATTAGGGTGGGGGATAAGGGTTGCATGCATTAGATCAGTTTCGTAATAATTGGAGCTTAATTAAGTATACATGACCAGTATGATAAGCATCATGAGGTCACACGGTGAGGCTGCGAGCTGAGCTCCAGGGTTTCCAAATTGCCATATATGCATGGCTCTCCTACTTTCCAGTCTCCACTTCCTCCTGTGCAATACAACGATGGTGTCCTCCCTCTGTCGTACAATCTTAATGAATCATACAAAGGAATAATTAATACTGGAGCACATGCAGTTCTTTGAACTTGTACCTTGTACTGACGTTATTTTTTTTCCTCTGATTTTCTTTTATTTTTAGAATTAAGACCCAACCTTGCTGACATTATTAGCTTCTAATTAAAGAGTTCAGTGCATGCATCACAAGTGATGAACTGACAGGAGAAAGCTCTCAGCACGTTCTGTCCCCAATATCTCTGCAGGTCCTTGTCTAACCTACATTTTTGCTCTCTTGTCATGTCTTCCGCTGGTAGTCACAGAGAAATGGCTAGACGATCTTTGTTTTCAACTTAGACGATTTATGTTAAGATTAAGGGCCAAGAGGTAAATTAAACGAACCATCAAAGTTTGCAGAACATAGTGGCCAAATTGAGGTGTAAGTAACATCTAGCTGGTTGAAAACATGAGTGGCGGTGGATGACAGAATGAGTGGCCGGTGGGCCTATTGTCATTGTGCCTCCGTGAGTGTAATTGGTTTACCGACCTCAAATCCTGGATCGAGTCTTGGCTGTCGGACATGAATGGGCACTGTTAGTACCCTGTGCACTTTGTCTCATGGCCTGGATATATAGTTACTGGAGTGGGGTAAGGATCCAGCTATATATTAGACAATTGATAAGTGTGTATGACCATCTAGTTGTGTCCTTTCAAGTGCAGTTGTTTCCGAACATTATTGAGCACTTTCCGTAGCCATACGAATAGATTTCCAGATCAGAACTCTTTCTTATATATACAGACATCAATCGAGTGCCAAATAATTGAAAGAATGAAAGCAGCATAGTGACCAGCATGCATATCATATTGTGTTTTGTTGAAACATAGTTCAATAATTTTGTCTATATGAACTAGTGTAGTTTTTTACACTGGTAATTGCATATATACAAGGTGGTGTTTCATAAGACGACTAATATGGCAAAATTATGAAATTCACTATCCGTACAAATCCTGGATAATATATAGGAGTACATATATGGAAGAATTATCTGGTTTCTTATATATTTAGTCTGCCAAAATGTCATTCAGCTATTCCCCTACCGATGAGGCATTTTTTTTTGTGTCTACACATATATTCCTGTCTACAGATGGTCTCTTTTGGAATTGATTTTTGTTTCTAATTTGTTGGACAGATGGTCTCTTTTGGAATTGATTTTTTTTCTAATTTGTTGGATATTTATTGGACTGGTGCAACAATTCATCCCCTCACACATGATTTGATCTATTCCATATACTCAGATGAATTGTTGGAATCCTACTATTTCACCAGTATGGATCATGTTCAGATATTAGCTATTGACTTTTAGATATGACGTTTGAAATATAAATTATTTTTTGTGACTTGTTTATTATTAAAGGTACATCAAACATAACTTATAATTTTACATATTTGCACTATTTTTTTTTGTAAGGTGAATGGACAAACGTCATGTTCAAAAGTCAGCAATGTCATATATTTAAAAAAGGAGGGAGGATTGCATTAGGAGTTCATAAGAGTGATAAACACGGCTTGTTAATAAGTGAATGATTATCTAACTTAACATATATATCATCCACAACAATGAAAATACAGTCTATGCACACATTACTTTAACCAGTGTCTTGTACTAGCATCAATACTAACTAGACTTTGCACTCTTTTGATGTCATTTCGTCTCAATGTTGTCATTTCAGAAATATCCATTTAACTGTTCATAAGTAACACTTTTCATTCTGTTAATTACTTTTTGAATCATATTCTGGTTGCATGCTGCTCTACTGTCTGGAAATATTCCAATGTCAACAGAATGTGTATGTGCACACATGCAGCATAAATAGCTCCCAGAAAGTTTCAAATAAATTTTTATATTGGATGGAATTTGAACTGCATACTATAAATATTATCCTATGAATTGTAGGAGTTGTGTAATATATTTGTTATTTATATTTTTTTTAATCTTCTGAAATCAAGGGTATGAATAATTTTTTTAGTGGAACTAGTGTAGTCTTTGTAAGTATTTGGCCTTATTTCATTGTTAAAATCAATAGTTTTGTCTATATGAATTAGTGTAGTTTTTTACACTAGTAGTTGCATATATACAAGGTGGTGTTTCAAAAGACGACTAATATGGCAAAATTTATGAGATTCACTATCCGTACAAATCCTGGATCTATATATTACAATCGCTTTGAGATGAATGCAAATTAGGATGGGCACAATTTTTTCATAGCATGGTGGAATGGTTTCTCTTGTCACCATCGTTTTGAACTCATCTTTATTATGTGCCCGCTAATTACTCCCTCCTTTCTAAATTGATTATCATGTAATAGAAATCAAAATTTCTTAAATTGATCATCATATAACTGCATGGAGACGGATTTCATCGGAATACAATTAATACAACATGGGAGAATGCGTGCATGCTAGGGTGGAGTAATTGGCATGGAGTTTTAATCGATGTATGCATTGTGGGAGAATGTGTGCATTGTGTCTTGATTGATGTGATTTAAATTATTTTTTGGTCTTGGTGCGTAAATTTATATGATGATCAATTTGAGAAGGAGACAGTATATTTTAAAACCGTTCTGTCTAAGTGTTCACACAAGATCACTGATTTTTTTTTTTGCCTTCGAATAAACAGAACACAAGCAGGCCTTGTAATATTTAGTATATATTCTTGTCATAGCTTTTCCCTACGAATCAAAATGAATATCCTTGTCTCAAATTGAACGGTATGGCGGCTGTTTGACTAGTCTAGTTTTCTGCTTGGAATTTGGAAATACCGTGGCCTGTTTGGTGGAGCTTTAGATTCTGATAATCAGCTGTTTGGTAGCAAGCTTCTGAAAATCTGGAAATGCTCTGAAACCCAGCTTCTCCAGCTTCTGGCTTCTTAGTTCAATTTTCAGAATCTGTAACTACAGATTCTCAGAAGCTGTGGACTGTTTGGGACAGCTTCTAGCAGAAGTAGCTTTTGGGAAAAGTTGCAGCTGGAAGAAGCTCCTCCAAACAGGGCCTGTCTAGCTGAGCAAGGACAATTATTGGGTGCACAGAGTGTACAACATGTTCAGGCCTTCAGGGTTGCACTGTTGCTTACTTCGATACACTCCTACCTAGTAAACACAAAGAATTAATTGACTGACTGGTGGCCTGGTGGGGCTGACCGATTGAGTAATACACAGTACTACCATTATACTCTATGCATAATCTATTCGATCTCCCACACCTCCCTTCATATGAGGTTTACCTGCTGTGACGCACGCAGTCATGTAATTTTTAATTATTTTGATAGAACATCATGTTGAACAATTAACCTTTTTGAGCTGCTGTTTTTAACAGAGAGTAATTGTGAAGGCACGGGATCATCAGAGGAAGAGCAAGACCCTAGTGACAAGCAGCTGAAGCACCAGCTTCTGAGGAAGTACGGTGGCTCGTTGGGCGATCTCCGGCAGGTGTTCTCCAAGAGGACCAAGAAAGGGAAGCTTCCCAAGGAGGCCAGGCAGAAGCTTCTGCACTGGTGGGAGCTGCACTACAAGTGGCCCTATCCCTCCGTACGCACGCATCACATCCCGTTTGATCAATTCAACCACATTTTCTGCACCAAATTAACTCGTTTGAAAATGCGTGAAATTTACGGGGTTGTGTATGAGCAGGAGATGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGCCGGTGGCAGGCACGGCCTTCCCGACGATGGAAGCTGCCGGAGGCGGCTTCCGACACTCCGGCCACGGCGGCGGCCTTGCGGCGGCGGCGGCGCTGCCGCTGTACATGGGCAGGCCGTTCGTTGTGGACGGCATGTACCGGCTCGGGTCTTGAAGCCTCTGGGGATCGCATGGTGTTTGCATGGTGTTTTTTGCTTGGTAAATATTTGCTAGCAGCTTCCCATGATCAGCCTGTGGGATGGTGAAATGGAAGAACTGATGAATCTTCATCACGATCTTTCCTCTCATTTTTTTTTCTTTGGTGTGTGATAAAAGCTCAGATGTACCACGTACTACTGTCTGCTTCTTTGCAAATGGATATGTAATTGAAAGCTTTAATTCTAAACATGGGACTCCTCCGTTTTTATATT
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| CDS seq | ATGGAGAGCTTCGCCAGTCTCGCAGGAGGTGGCAGCAGCAGCACCACAGCTCGGTTGCCGGAGCTGATCTCGCCGGAGAACCCGGACCACATCTCGCCGCCCCCGTTGCTGTACCAGCTGCTCGCCGGCCCGGAGTCGTCGGCGCGGCAGCATGGGCATGATGGGCATCACCACGGCGGCGGTGGCGGCGAAGCAGCAGCAGCAGCTGTGCAGGGACAGGTCTCGCCGGCAGGCGCGGAGGCGGCGGTCAAGGCCGAGATCATGTCGCATCCACAGTACTCGGCTCTCCTAGCCGCCTACTTAGGCTGCAAAAAGGTCGGGGCGCCGCCGGATGTACTGACCAAGCTCACGGCTGTGCCGGCGGCGCAGCAGCTGGACGAAGCCGACGGCCACCCTCGTCGCCGGCACGAGCCACAGCGTGATGACGACCCGGATCAGCTCGATCAGTTCATGGACGCGTACTGCAGCATGCTGACGAGGTACAGGGAGGAGCTGGAGCGGCCGATCCTGGAAGCCGCGGAGTTCTTCAGCAGGGTGGAGACGCAGCTCGATTCGCTCGCTGGCACGGGATCATCAGAGGAAGAGCAAGACCCTAGTGACAAGCAGCTGAAGCACCAGCTTCTGAGGAAGTACGGTGGCTCGTTGGGCGATCTCCGGCAGGTGTTCTCCAAGAGGACCAAGAAAGGGAAGCTTCCCAAGGAGGCCAGGCAGAAGCTTCTGCACTGGTGGGAGCTGCACTACAAGTGGCCCTATCCCTCCGAGATGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGCCGGTGGCAGGCACGGCCTTCCCGACGATGGAAGCTGCCGGAGGCGGCTTCCGACACTCCGGCCACGGCGGCGGCCTTGCGGCGGCGGCGGCGCTGCCGCTGTACATGGGCAGGCCGTTCGTTGTGGACGGCATGTACCGGCTCGGGTCTTGA
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| Protein seq | MESFASLAGGGSSSTTARLPELISPENPDHISPPPLLYQLLAGPESSARQHGHDGHHHGGGGGEAAAAAVQGQVSPAGAEAAVKAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQLDEADGHPRRRHEPQRDDDPDQLDQFMDAYCSMLTRYREELERPILEAAEFFSRVETQLDSLAGTGSSEEEQDPSDKQLKHQLLRKYGGSLGDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRHWKPTPVAGTAFPTMEAAGGGFRHSGHGGGLAAAAALPLYMGRPFVVDGMYRLGS |
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| Function | Homeobox protein knotted-1-like 8 [UniProtKB/Swiss-Prot:Q10ED2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0771500 | OsNip_03t0771500-01 | Chr03 | 31964738 | 31970261 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGAGCTTCGCCAGTCTCGCAGGAGGTGGCAGCAGCAGCACCACAGCTCGGTTGCCGGAGCTGATCTCGCCGGAGAACCCGGACCACATCTCGCCGCCCCCGTTGCTGTACCAGCTGCTCGCCGGCCCGGAGTCGTCGGCGCGGCAGCATGGGCATGATGGGCATCACCACGGCGGCGGTGGCGGCGAAGCAGCAGCAGCAGCTGTGCAGGGACAGGTCTCGCCGGCAGGCGCGGAGGCGGCGGTCAAGGCCGAGATCATGTCGCATCCACAGTACTCGGCTCTCCTAGCCGCCTACTTAGGCTGCAAAAAGGTCGGGGCGCCGCCGGATGTACTGACCAAGCTCACGGCTGTGCCGGCGGCGCAGCAGCTGGACGAAGCCGACGGCCACCCTCGTCGCCGGCACGAGCCACAGCGTGATGACGACCCGGATCAGCTCGATCAGTTCATGGACGCGTACTGCAGCATGCTGACGAGGTACAGGGAGGAGCTGGAGCGGCCGATCCTGGAAGCCGCGGAGTTCTTCAGCAGGGTGGAGACGCAGCTCGATTCGCTCGCTGGCACGGGATCATCAGAGGAAGAGCAAGACCCTAGTGACAAGCAGCTGAAGCACCAGCTTCTGAGGAAGTACGGTGGCTCGTTGGGCGATCTCCGGCAGGTGTTCTCCAAGAGGACCAAGAAAGGGAAGCTTCCCAAGGAGGCCAGGCAGAAGCTTCTGCACTGGTGGGAGCTGCACTACAAGTGGCCCTATCCCTCCGAGATGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGCCGGTGGCAGGCACGGCCTTCCCGACGATGGAAGCTGCCGGAGGCGGCTTCCGACACTCCGGCCACGGCGGCGGCCTTGCGGCGGCGGCGGCGCTGCCGCTGTACATGGGCAGGCCGTTCGTTGTGGACGGCATGTACCGGCTCGGGTCTTGA
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| Protein seq | MESFASLAGGGSSSTTARLPELISPENPDHISPPPLLYQLLAGPESSARQHGHDGHHHGGGGGEAAAAAVQGQVSPAGAEAAVKAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQLDEADGHPRRRHEPQRDDDPDQLDQFMDAYCSMLTRYREELERPILEAAEFFSRVETQLDSLAGTGSSEEEQDPSDKQLKHQLLRKYGGSLGDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRHWKPTPVAGTAFPTMEAAGGGFRHSGHGGGLAAAAALPLYMGRPFVVDGMYRLGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0771500 | OsNip_03t0771500-02 | Chr03 | 31964773 | 31970251 | + | IsoSeq | ||
| CDS seq | ATGGGCATGATGGGCATCACCACGGCGGCGGTGGCGGCGAAGCAGCAGCAGCAGCTGTGCAGGGACAGGTCTCGCCGGCAGGCGCGGAGGCGGCGGTCAAGGCCGAGATCATGTCGCATCCACAGTACTCGGCTC |
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| Protein seq | MGMMGITTAAVAAKQQQQLCRDRSRRQARRRRSRPRSCRIHSTRL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 31965698 | 31969455 | + | OsNip_03t0771500-02 | OsNip_03t0771500-01,OsNip_03t0771500-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.482966 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0129700 | RBH | 0.0 | 0.0 | 4.489302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56110 | RBH | 0.0 | 0.0 | 0.291277 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0771500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036290 | RBH | 0.0 | 0.0 | 2.636848 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035960 | RBH | 0.0 | 0.0 | 0.689571 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036040 | RBH | 0.0 | 0.0 | 2.414839 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036340 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035830 | RBH | 0.0 | 0.0 | 3.546253 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0545000 | RBH | 0.021468 | 0 | 0.5604125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035630 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0545400 | RBH | 0.0597465 | 0.1029225 | 0.830451 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035780 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035820 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035650 | RBH | 0.0 | 0.0 | 1.389912 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035440 | SBH | 0.0 | 0.0 | 1.654512 |
