Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g52100 | OGI:03072530 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:29914238-29917317 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCGTCTTCCGCCAGCCCATCTGGTGCGCCATTAGTCGAATACGCTGAGGTAAGTTCTCATCGGCTAAATCCCCTTCCTTAGCAGCAGATCGATTTATCCTACCACATATTGCTTTCCTTCTCTTGGTTGCCTCGGATTTGTAGCATCTTTCTCACCAAGTCACAATTCCCAGTCTGACGCATGAAAACCACTACTTTCTCGGCCCAATCAGCACTCCTGACCCCACCAAGTTCATTATTGGTGAAACCAATAGGATCTCCTTCAGATTAACCAACCCAGATCTAGGTCACTGGAAGAATACTTTCAAGTCCTGGCCATCTCTAGAGAAAGTTCCACCAGAAAAGAGCTGGACTACATGGTTCGAACGTGTATCAGCCAGCAAGAGGGTCCACTGGGATGAAATCGGAATCGGCCAAGCACTTGACCTTACTATAGAAAACTCGACCAAAGATGAACCCCTGATGGCAGCTGCTTCTTACTTCTGGTCAAACACTATTAATGTCTTTTTATTCAATCAAGGGCCGATGACCCCAACTCTTATAGATATCAGCATGATCACGGGTCTGGATGTCACCTCATCGGCCAACCCTATGAGCTTGAACACAAATAACCATTATGACTTCAAGACCAAAAGCATAGGAGGTTGGTCAGGCTATGTAGCGGCATATATGGGTCAGGGCTCGGTCACCCCTCGGGAACATGTGGCCTTTTTGTTAATGTGGCTAGAAAAATTTCTTTTCTGTGGATCAAGTTGCGGCCCCACAACCAATTGGCAATTTCTAGCTGAAGCTCTAGAAACAAAGAGACAATTTCCCTTGGGCAAAATTCTCCTCGGCTATCTATACCAGATGTTGAACAATGCATCGGCTAAGATAGCCGTCGGCTCAGTAGTTGGAGCAGGTAGATCCTGGTGGTTGCTACAAACCTGGTTAAACCTGATAGTTATGAAGGTTGTAGATCGGCCATCCGTATCAGAAGCTGAGTTCCCAAGACTAGAGCCGATTGTAGGGGATGATGGAGAAGAGCGTACTCATCGGAGATGCACATCATACGGAGAATACGCTTCTACACCAACTGATGCCGGGGCAAAACTATCGGCTGAACTGCTCAAAGATTGGTTCTGCAGCTTCTATGAAGGCTTTCAAAAAGATGCTCGAGTTTCGTTCCTTTATGAAGATTCTGCAGAACTTGAGCACCCACTGGACTTCAGATTCGAAGACATCAACCACGAAATATACCAATCGTCCACGGAGATTTTCTCAGCTGCAATCAGCCCATGTATCCTTCCTGTTGGCATTCATCAAGGAAGAAACATCCAAGCTTCTTACGAATTCTATCATCCAATGAGCTCAGCTAGACAACTTGGAATAGGCCAACTCCCAATCGGCCTATTCTTTGCCGACAAGATCCAATGCCGAGGAGAAATTTCATCGACCTTGATGATGGATCGGCTACTCAACCTTCAAGGACCCCCTCTGGGCAGTATTGACAACATAGAACTGGCAATGTTCAGAAGCAAAAACTTTGACAGACGATGGGGTGAATGGAAGCTGCATCTATTCCACCAACCAGCTTCAATGTTTATGACAGACCTCTTCCCAGATGTTGTCCCTCAAGTAAGTCTTTAACTCCACTTGATTTAAATAGCTGTTTAGCCGATTAATCTCAACTAATCCTCCTTTTGATTTGCAGACAACAGAATCCTCTCCTCCCCGTCAAAGCAACAGTGGTAAGGATATCCAATATGCCCCAGGTTTAATTCTTAACGGAGGTGGGCTATCTCCTCCGGTTATTGGATATGATGCCCCCAAGACCTCAGCTCTTCTTCAAGGGCTTATCAGAGAACCAGCCGATGCCAGCAAAAAGAGGAAAACCAGATCGTCGGTTGTAGACATCGCAGCTCCAACTAAGAAGAAGAAGACAAAGAAAACCAAGCCAGCCGATGATCTGCCTACCCTAGATTGAAGACGAAGTTGATCGGGCCGCAGCCGAAGTAAGCGATACTGAAAGAACACCATCGGCTTCGCCCAAGCAAACCCCTCCAACTCCTTCTGCTCCGGTTCACTTTTCAAGGGTAAATATCTCTCTTTAATTCCTTTCATAATTATTTTGTCTTATAGCCGATCATTCCCAAGTCTTATAATTGCAGAAAAAGAAGACTGCGGTGAAGAAGAAATCGGCTGCAACGTCTAAACCAGCTCCACCAGTAAGATAGTTTTAACTTTCATTAGTTAATTTTTAGCCGATTCTGGCTGACACTTGTTTCCTTTCAGCCTTCCCCTCCTCCTTCTCCTCCTGTACAACAAACATCAAGTGACAAGACCCCTTCAGCTGTGGGGAGTCATCACGTCGAGGAAGAAGAACAACCAGCTGCTCCTGCTATCCCAGTAAGTTTCTTTTTGTCTCAACAACCATTCAGATCGACTATGACTGTTTCTAATTGCTTCTAAATCGTTGCTGCAGGTATTAGCCGATCTTTTCTCTTTTGACATCAGAGACTATCTTGATGAAGGAGAAGAAGATACCACAAGCAAAACCTTACCCCTTTATCTGATGATGTGAAGAAAACTCTAGGAAGTATCTTGGATCGGCTAGAAGCATCATCGCTAGATAGCCTGGTGGTTGATTGTGGCTCAATCAGGGCTTGGCTACATGAGATTCAGGCTCTAATCCCAGATGAGTTAACCGATATCCTCACCCTAGCCGTTTACCTTGAGCAACACCAATTCAAACTGGAAAAAGCCAAATTAAGACTGGCTGAACGGCGAGAGCGCAAGGATATTGAGGCCACTATCCAAGCTAATCGACAACTTGTGCATGAAGAGAAATCCAAGCTTGATCAACTATCTGAAGGCCCAATCAAGTCTAATATTGATCGGCTCGAGGCTCACAAGATTGAACTCTTAGCACAACTTGAAGAATGCAACGCTGAGCTGGACATGGAACACAAAAAACTAGCCGATCTCCCAAAATCTATTGAAGAACAGAAAGCAAGACTCAAATCGGCTATCAAGCATGTTGCTGATCTGACCAAGTCTCTGAAAGTTATCCTTGGAACCGACGCTCAGGATGCCTAA
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| CDS seq | ATGTCGTCTTCCGCCAGCCCATCTGGTGCGCCATTAGTCGAATACGCTGAGCATCTTTCTCACCAAGTCACAATTCCCAGTCTGACGCATGAAAACCACTACTTTCTCGGCCCAATCAGCACTCCTGACCCCACCAAGTTCATTATTGGTGAAACCAATAGGATCTCCTTCAGATTAACCAACCCAGATCTAGGTCACTGGAAGAATACTTTCAAGTCCTGGCCATCTCTAGAGAAAGTTCCACCAGAAAAGAGCTGGACTACATGGTTCGAACGTGTATCAGCCAGCAAGAGGGTCCACTGGGATGAAATCGGAATCGGCCAAGCACTTGACCTTACTATAGAAAACTCGACCAAAGATGAACCCCTGATGGCAGCTGCTTCTTACTTCTGGTCAAACACTATTAATGTCTTTTTATTCAATCAAGGGCCGATGACCCCAACTCTTATAGATATCAGCATGATCACGGGTCTGGATGTCACCTCATCGGCCAACCCTATGAGCTTGAACACAAATAACCATTATGACTTCAAGACCAAAAGCATAGGAGGTTGGTCAGGCTATGTAGCGGCATATATGGGTCAGGGCTCGGTCACCCCTCGGGAACATGTGGCCTTTTTGTTAATGTGGCTAGAAAAATTTCTTTTCTGTGGATCAAGTTGCGGCCCCACAACCAATTGGCAATTTCTAGCTGAAGCTCTAGAAACAAAGAGACAATTTCCCTTGGGCAAAATTCTCCTCGGCTATCTATACCAGATGTTGAACAATGCATCGGCTAAGATAGCCGTCGGCTCAGTAGTTGGAGCAGGTAGATCCTGGTGGTTGCTACAAACCTGGTTAAACCTGATAGTTATGAAGGTTGTAGATCGGCCATCCGTATCAGAAGCTGAGTTCCCAAGACTAGAGCCGATTGTAGGGGATGATGGAGAAGAGCGTACTCATCGGAGATGCACATCATACGGAGAATACGCTTCTACACCAACTGATGCCGGGGCAAAACTATCGGCTGAACTGCTCAAAGATTGGTTCTGCAGCTTCTATGAAGGCTTTCAAAAAGATGCTCGAGTTTCGTTCCTTTATGAAGATTCTGCAGAACTTGAGCACCCACTGGACTTCAGATTCGAAGACATCAACCACGAAATATACCAATCGTCCACGGAGATTTTCTCAGCTGCAATCAGCCCATGTATCCTTCCTGTTGGCATTCATCAAGGAAGAAACATCCAAGCTTCTTACGAATTCTATCATCCAATGAGCTCAGCTAGACAACTTGGAATAGGCCAACTCCCAATCGGCCTATTCTTTGCCGACAAGATCCAATGCCGAGGAGAAATTTCATCGACCTTGATGATGGATCGGCTACTCAACCTTCAAGGACCCCCTCTGGGCAGTATTGACAACATAGAACTGGCAATGTTCAGAAGCAAAAACTTTGACAGACGATGGGGTGAATGGAAGCTGCATCTATTCCACCAACCAGCTTCAATGTTTATGACAGACCTCTTCCCAGATGTTGTCCCTCAAACAACAGAATCCTCTCCTCCCCGTCAAAGCAACAGTGGTAAGGATATCCAATATGCCCCAGGTTTAATTCTTAACGGAGGTGGGCTATCTCCTCCGAAAAAGAAGACTGCGGTGAAGAAGAAATCGGCTGCAACGTCTAAACCAGCTCCACCACCTTCCCCTCCTCCTTCTCCTCCTGTACAACAAACATCAAGTGACAAGACCCCTTCAGCTGTGGGGAGTCATCACGTCGAGGAAGAAGAACAACCAGCTGCTCCTGCTATCCCAAAAACTCTAGGAAGTATCTTGGATCGGCTAGAAGCATCATCGCTAGATAGCCTGGTGGTTGATTGTGGCTCAATCAGGGCTTGGCTACATGAGATTCAGGCTCTAATCCCAGATGAGTTAACCGATATCCTCACCCTAGCCGTTTACCTTGAGCAACACCAATTCAAACTGGAAAAAGCCAAATTAAGACTGGCTGAACGGCGAGAGCGCAAGGATATTGAGGCCACTATCCAAGCTAATCGACAACTTGTGCATGAAGAGAAATCCAAGCTTGATCAACTATCTGAAGGCCCAATCAAGTCTAATATTGATCGGCTCGAGGCTCACAAGATTGAACTCTTAGCACAACTTGAAGAATGCAACGCTGAGCTGGACATGGAACACAAAAAACTAGCCGATCTCCCAAAATCTATTGAAGAACAGAAAGCAAGACTCAAATCGGCTATCAAGCATGTTGCTGATCTGACCAAGTCTCTGAAAGTTATCCTTGGAACCGACGCTCAGGATGCCTAA
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| Protein seq | MSSSASPSGAPLVEYAEHLSHQVTIPSLTHENHYFLGPISTPDPTKFIIGETNRISFRLTNPDLGHWKNTFKSWPSLEKVPPEKSWTTWFERVSASKRVHWDEIGIGQALDLTIENSTKDEPLMAAASYFWSNTINVFLFNQGPMTPTLIDISMITGLDVTSSANPMSLNTNNHYDFKTKSIGGWSGYVAAYMGQGSVTPREHVAFLLMWLEKFLFCGSSCGPTTNWQFLAEALETKRQFPLGKILLGYLYQMLNNASAKIAVGSVVGAGRSWWLLQTWLNLIVMKVVDRPSVSEAEFPRLEPIVGDDGEERTHRRCTSYGEYASTPTDAGAKLSAELLKDWFCSFYEGFQKDARVSFLYEDSAELEHPLDFRFEDINHEIYQSSTEIFSAAISPCILPVGIHQGRNIQASYEFYHPMSSARQLGIGQLPIGLFFADKIQCRGEISSTLMMDRLLNLQGPPLGSIDNIELAMFRSKNFDRRWGEWKLHLFHQPASMFMTDLFPDVVPQTTESSPPRQSNSGKDIQYAPGLILNGGGLSPPKKKTAVKKKSAATSKPAPPPSPPPSPPVQQTSSDKTPSAVGSHHVEEEEQPAAPAIPKTLGSILDRLEASSLDSLVVDCGSIRAWLHEIQALIPDELTDILTLAVYLEQHQFKLEKAKLRLAERRERKDIEATIQANRQLVHEEKSKLDQLSEGPIKSNIDRLEAHKIELLAQLEECNAELDMEHKKLADLPKSIEEQKARLKSAIKHVADLTKSLKVILGTDAQDA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g52100 | LOC_Os03g52100.1 | Chr03 | 29914238 | 29917317 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGTCTTCCGCCAGCCCATCTGGTGCGCCATTAGTCGAATACGCTGAGCATCTTTCTCACCAAGTCACAATTCCCAGTCTGACGCATGAAAACCACTACTTTCTCGGCCCAATCAGCACTCCTGACCCCACCAAGTTCATTATTGGTGAAACCAATAGGATCTCCTTCAGATTAACCAACCCAGATCTAGGTCACTGGAAGAATACTTTCAAGTCCTGGCCATCTCTAGAGAAAGTTCCACCAGAAAAGAGCTGGACTACATGGTTCGAACGTGTATCAGCCAGCAAGAGGGTCCACTGGGATGAAATCGGAATCGGCCAAGCACTTGACCTTACTATAGAAAACTCGACCAAAGATGAACCCCTGATGGCAGCTGCTTCTTACTTCTGGTCAAACACTATTAATGTCTTTTTATTCAATCAAGGGCCGATGACCCCAACTCTTATAGATATCAGCATGATCACGGGTCTGGATGTCACCTCATCGGCCAACCCTATGAGCTTGAACACAAATAACCATTATGACTTCAAGACCAAAAGCATAGGAGGTTGGTCAGGCTATGTAGCGGCATATATGGGTCAGGGCTCGGTCACCCCTCGGGAACATGTGGCCTTTTTGTTAATGTGGCTAGAAAAATTTCTTTTCTGTGGATCAAGTTGCGGCCCCACAACCAATTGGCAATTTCTAGCTGAAGCTCTAGAAACAAAGAGACAATTTCCCTTGGGCAAAATTCTCCTCGGCTATCTATACCAGATGTTGAACAATGCATCGGCTAAGATAGCCGTCGGCTCAGTAGTTGGAGCAGGTAGATCCTGGTGGTTGCTACAAACCTGGTTAAACCTGATAGTTATGAAGGTTGTAGATCGGCCATCCGTATCAGAAGCTGAGTTCCCAAGACTAGAGCCGATTGTAGGGGATGATGGAGAAGAGCGTACTCATCGGAGATGCACATCATACGGAGAATACGCTTCTACACCAACTGATGCCGGGGCAAAACTATCGGCTGAACTGCTCAAAGATTGGTTCTGCAGCTTCTATGAAGGCTTTCAAAAAGATGCTCGAGTTTCGTTCCTTTATGAAGATTCTGCAGAACTTGAGCACCCACTGGACTTCAGATTCGAAGACATCAACCACGAAATATACCAATCGTCCACGGAGATTTTCTCAGCTGCAATCAGCCCATGTATCCTTCCTGTTGGCATTCATCAAGGAAGAAACATCCAAGCTTCTTACGAATTCTATCATCCAATGAGCTCAGCTAGACAACTTGGAATAGGCCAACTCCCAATCGGCCTATTCTTTGCCGACAAGATCCAATGCCGAGGAGAAATTTCATCGACCTTGATGATGGATCGGCTACTCAACCTTCAAGGACCCCCTCTGGGCAGTATTGACAACATAGAACTGGCAATGTTCAGAAGCAAAAACTTTGACAGACGATGGGGTGAATGGAAGCTGCATCTATTCCACCAACCAGCTTCAATGTTTATGACAGACCTCTTCCCAGATGTTGTCCCTCAAACAACAGAATCCTCTCCTCCCCGTCAAAGCAACAGTGGTAAGGATATCCAATATGCCCCAGGTTTAATTCTTAACGGAGGTGGGCTATCTCCTCCGAAAAAGAAGACTGCGGTGAAGAAGAAATCGGCTGCAACGTCTAAACCAGCTCCACCACCTTCCCCTCCTCCTTCTCCTCCTGTACAACAAACATCAAGTGACAAGACCCCTTCAGCTGTGGGGAGTCATCACGTCGAGGAAGAAGAACAACCAGCTGCTCCTGCTATCCCAAAAACTCTAGGAAGTATCTTGGATCGGCTAGAAGCATCATCGCTAGATAGCCTGGTGGTTGATTGTGGCTCAATCAGGGCTTGGCTACATGAGATTCAGGCTCTAATCCCAGATGAGTTAACCGATATCCTCACCCTAGCCGTTTACCTTGAGCAACACCAATTCAAACTGGAAAAAGCCAAATTAAGACTGGCTGAACGGCGAGAGCGCAAGGATATTGAGGCCACTATCCAAGCTAATCGACAACTTGTGCATGAAGAGAAATCCAAGCTTGATCAACTATCTGAAGGCCCAATCAAGTCTAATATTGATCGGCTCGAGGCTCACAAGATTGAACTCTTAGCACAACTTGAAGAATGCAACGCTGAGCTGGACATGGAACACAAAAAACTAGCCGATCTCCCAAAATCTATTGAAGAACAGAAAGCAAGACTCAAATCGGCTATCAAGCATGTTGCTGATCTGACCAAGTCTCTGAAAGTTATCCTTGGAACCGACGCTCAGGATGCCTAA
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| Protein seq | MSSSASPSGAPLVEYAEHLSHQVTIPSLTHENHYFLGPISTPDPTKFIIGETNRISFRLTNPDLGHWKNTFKSWPSLEKVPPEKSWTTWFERVSASKRVHWDEIGIGQALDLTIENSTKDEPLMAAASYFWSNTINVFLFNQGPMTPTLIDISMITGLDVTSSANPMSLNTNNHYDFKTKSIGGWSGYVAAYMGQGSVTPREHVAFLLMWLEKFLFCGSSCGPTTNWQFLAEALETKRQFPLGKILLGYLYQMLNNASAKIAVGSVVGAGRSWWLLQTWLNLIVMKVVDRPSVSEAEFPRLEPIVGDDGEERTHRRCTSYGEYASTPTDAGAKLSAELLKDWFCSFYEGFQKDARVSFLYEDSAELEHPLDFRFEDINHEIYQSSTEIFSAAISPCILPVGIHQGRNIQASYEFYHPMSSARQLGIGQLPIGLFFADKIQCRGEISSTLMMDRLLNLQGPPLGSIDNIELAMFRSKNFDRRWGEWKLHLFHQPASMFMTDLFPDVVPQTTESSPPRQSNSGKDIQYAPGLILNGGGLSPPKKKTAVKKKSAATSKPAPPPSPPPSPPVQQTSSDKTPSAVGSHHVEEEEQPAAPAIPKTLGSILDRLEASSLDSLVVDCGSIRAWLHEIQALIPDELTDILTLAVYLEQHQFKLEKAKLRLAERRERKDIEATIQANRQLVHEEKSKLDQLSEGPIKSNIDRLEAHKIELLAQLEECNAELDMEHKKLADLPKSIEEQKARLKSAIKHVADLTKSLKVILGTDAQDA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g26230 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023640 | SBH | 0.0 | 0.0 | 0.663320 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023480 | SBH | 0.0 | 0.0 | 0.333338 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0023520 | SBH | 0.0 | 0.0 | 0.783718 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0023350 | SBH | 0.0 | 0.0 | 0.395095 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0441200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0023120 | SBH | 0.0 | 0.0 | 0.150434 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0442300 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0023390 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0023430 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0023520 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0023320 | SBH | 0.0 | 0.0 | 0.380476 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0023190 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G023230 | SBH | 0.054418 | 0.0 | 0.247968 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
