Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_03g0023520 OGI:03057080 | 16/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr03:21243862-21246960
Gene Symbol -
DNA seq

GGTAATTAAAATGGATCCATTATCCATAGTGTTCAGTCATGTCTTGCTAAAAAAATTAGAAAGGAAAGAAATATATTACTGGGACTGACTACTGAGTGCTAGCTGCAGTTTCTTCATTACTGGCCTTCCACAGGCTATTTAATTATGATCCCATTTTCACTAGCAAGACTGCTACAGCCTATTATAACTGTACAAATAATATCAGGAGTTCAAAAGTACGACCATCACTGAAGTTATACATCAAGTTTTGAAGGGTTCCTATCCCTCAATTGTTCCTTCAGATGTTTGATTACTCTTTCCAACTCAACCTTTTGGGCTTCTCGAGCTGCAAACGATTTCTCAATCATTTCCCTCGTCCCAACTTCCCTCCTTGGCTGGTAAACTCCATGATCTCTATTCATGTCACTTGCATCTCTTTCATGAGCATTTTTCAGCAACCAAATTTTAGTAAGATAGTACAGCGTTTTTGTAGAAACTTTTGTCCTGACCAATTCAGTACTTGCATTTACAAGAATATCAGAAGAAATGCCATTGTTTCCTACAAGAAAGAGATAACAGGGATGCATTAGCTTCTGCTCAAAAAAACAGGGATGCATTAGCAAATATCGTGTAATGTCGTGTAATACTGGTAACTCTTCTTTCATCTTAATGAAATTTGGTCGGCGTCATTCCGCCGACCCGGCAAAAAATAGCAAATATCAACTTGTATCCTGTTTGCGTTACTATACATGGTAACACAGATTAAGATATCCAAACTGTTATTGGAATTATTATACCTGAGTTCTTTCTGCTGATTTCTATGCAATCTTCTATAAGAGAACCTGCTGTTGCTTGATTTGATGTTGAATCATCTTCATTTTCTTTTTCAGTACCTTTCAAAGATGCTAATTCATCCTTGTCTGTCTTGGCTCTATTATCTCTCTCTAATGCAAACATGCATGTTCCCATATCTTCAGTTGATTGCTGTTGGGGAGCAGCACCCAGCAGGACAGCATCAAGCTCATAACCACAATTGCGTTCCATCATAACTTCATCACTTGTCACTAGAATGTCTTCAGGTGTTGGCAGCATGCCAGCTGTTGTTGCAGCTTCAATGGCTTCATTACTGCCAGTACTAGCTGCACTCTCAACGCCATGATGTATCATTACTTGTCCAGAGTTGAAATTGTTTGCCTCATAGGCACTGGCATGGTCTTGTGCTTTCTGTTTACTTTGTAGGAGAGATATGTGTTGTTCCATTTTGGTGACTGACCCACAAAATGATTCATCAGCTGAACTATCCAAGACTCTCATTGAATCAGATAAGTATTGCTCAGCATCTTGTTGCACAATCATACTGTTATCCTTCCCTCTGATGAACTCTGGGACAGAATACTTCACAACGTCTGCGATTTGCTCTTGCCTAGCACATTGTACCATAATTATATTGTTTAGCCTCTCAATCAGAGGAATCTCATCCAGTGGATCCTCCATGGTACCAGGTAAAGGCACACTGGTGTCAACATGCTGCTTTTTGCAAGAATTAGCCCCAGAAAGCTCTTCAGTGTTTCTTTTCATTGGAATAAAAAGGGAATGGGGTTCTCTTGTGTTTGCATAGTTAGAAACATCAGTAGAGCAAGCCAACGAATATGGCTCCCACCATCGCGCATACTCCAGTGTCACCCCAAGCTTATAGTGTGGAACAACCAATGCAAACTTTCGATAGCCAAACGTATATGTTCTCCATGCCACCTTCCAGTTTGAGTTAGCGCGAGCAATCGTCCCAGGCACATCCTGATCAAAGCCAAACTGCCTTGCAACACGATGCGGATGTATTGCTCAATGCAGCCCATGCCGACGAGCTCACATTGGCGCAAACATCGCGTAAAGGATAACAGCGTATTACTTGTCATTACATCCTGGACAACCCAAGTGCCAGCCTTAGCTTCCTTGGGTGGCAGAGCAATGCTGCGACTCCCGTATGGCCTCCACTCAAACTTGTCCGGTGACATGAACACGCCATGAACAAACTGGGGGTCCAGCGCCTTGTGGACGCCGTGCCACCGAGCAGCCATTGGCACACGGCAAGCATCAGTGGTTGCAGGGATGGTGGTGGTCGCCATGGCAGGGCGGAGCTGAGGGAAGCGCTCCCAGACCCAGAGGTGGAGAATGTGCATCGGCGCCGTCACCTGGAGCGCCTCCTCCTCCCTGTCGCGCAAGTCCAAGAAGCGCTTGAGCGCGGAGAGGTCGCCGTAGATGCCGGCGAGCGCGGCGGGCGCGAGCGCCACGCGGATGCCCCGCGCTAGCAGGGCGGCGATGGGGAACACCTGAGGCCCAACCACGTCGAACGGCGGTGCCGCGAAGACGAAGAGCGACAGCCACATGGCCAGAAACGCCCCGTGCTCGATCAGGTCGGCGCCGGCGCTGGCGGCCGTCTCGTCGTCCTCCTCCTCCTGGCGCTTAAGAAAGTACTGCACCCACCCAGGATAGGAGGGCTTCTTGTACTTGCTCCGGTGCAGGGCGCTCCGAACGGCCATGAGCGCGTCCACGTCCCCGACAAGAGCGTCCGGCAGGCGCGCCCGCACGGGCTTGCCAAAGAGCGGCAGGCCGGCGAGCACGGTCATGTCCTCCAGCGTCACCGTGGCCTCGCCCCACGGGAACATGAACGTGTTGGTGTCTGCGGACCAGAACGCGGCGAGCTGGAGCAGCGTGCCCTCGTCGCGGCGTACCCGGTAAGCCGTGGCGAGAATGGCATCCAAGATGCCAACACTCCGCCACAGGGGCTCGTGGCGCGGGCGGAGCCTGTCGACCCACTGCCTCCACAGGCCAGGGGAGCCAGCCCAGCCCTTGAACTCCACCACCCGGAGGAGGCCGTGGTGGTCAGGAACGGGGCCGCCACTGCAGAGCGGGGAGGAGGGCAGGGGCGGGGGCCGGCCACCGGCGGCCGCGCGGGGGAGGAGGAAGTGGGCCGATCGGACGGCGGGGCGGGAAGGGTCGCCGTCGGAGACGATCGGGACGGTGGATTCTTGGACCAGGAGCTCTTCGGTGCCGGCCATTGCGGCTGCGGAAAATTGGTTTGGTTGGGGTTTTGGTGAAGTGTGAGGAGGAAGGAACCGAGGA

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CDS seq

ATGGCCGGCACCGAAGAGCTCCTGGTCCAAGAATCCACCGTCCCGATCGTCTCCGACGGCGACCCTTCCCGCCCCGCCGTCCGATCGGCCCACTTCCTCCTCCCCCGCGCGGCCGCCGGTGGCCGGCCCCCGCCCCTGCCCTCCTCCCCGCTCTGCAGTGGCGGCCCCGTTCCTGACCACCACGGCCTCCTCCGGGTGGTGGAGTTCAAGGGCTGGGCTGGCTCCCCTGGCCTGTGGAGGCAGTGGGTCGACAGGCTCCGCCCGCGCCACGAGCCCCTGTGGCGGAGTGTTGGCATCTTGGATGCCATTCTCGCCACGGCTTACCGGGTACGCCGCGACGAGGGCACGCTGCTCCAGCTCGCCGCGTTCTGGTCCGCAGACACCAACACGTTCATGTTCCCGTGGGGCGAGGCCACGGTGACGCTGGAGGACATGACCGTGCTCGCCGGCCTGCCGCTCTTTGGCAAGCCCGTGCGGGCGCGCCTGCCGGACGCTCTTGTCGGGGACGTGGACGCGCTCATGGCCGTTCGGAGCGCCCTGCACCGGAGCAAGTACAAGAAGCCCTCCTATCCTGGGTGGGTGCAGTACTTTCTTAAGCGCCAGGAGGAGGAGGACGACGAGACGGCCGCCAGCGCCGGCGCCGACCTGATCGAGCACGGGGCGTTTCTGGCCATGTGGCTGTCGCTCTTCGTCTTCGCGGCACCGCCGTTCGACGTGGTTGGGCCTCAGGTGTTCCCCATCGCCGCCCTGCTAGCGCGGGGCATCCGCGTGGCGCTCGCGCCCGCCGCGCTCGCCGGCATCTACGGCGACCTCTCCGCGCTCAAGCGCTTCTTGGACTTGCGCGACAGGGAGGAGGAGGCGCTCCAGGTGACGGCGCCGATGCACATTCTCCACCTCTGGGTCTGGGAGCGCTTCCCTCAGCTCCGCCCTGCCATGGCGACCACCACCATCCCTGCAACCACTGATGCTTGCCGTGTGCCAATGGCTGCTCGGTGGCACGGCGTCCACAAGGCGCTGGACCCCCAGTTTGTTCATGGCGTGTTCATGTCACCGGACAAGTTTGAGTGGAGGCCATACGGGAGTCGCAGCATTGCTCTGCCACCCAAGGAAGCTAAGGCTGGCACTTGGGTTGTCCAGGATGTAATGACAAGTAATACGCTGTTATCCTTTACGCGATGTTTGCGCCAATGTGAGCTCGTCGGCATGGGCTGCATTGAGCAATACATCCGCATCTTTGGCTTTGATCAGGATGTGCCTGGGACGATTGCTCGCGCTAACTCAAACTGGAAGGTGGCATGGAGAACATATACGTTTGGCTATCGAAAGTTTGCATTGGTTGTTCCACACTATAAGCTTGGGGTGACACTGGAGTATGCGCGATGGTGGGAGCCATATTCGTTGGCTTGCTCTACTGATGTTTCTAACTATGCAAACACAAGAGAACCCCATTCCCTTTTTATTCCAATGAAAAGAAACACTGAAGAGCTTTCTGGGGCTAATTCTTGCAAAAAGCAGCATGTTGACACCAGTGTGCCTTTACCTGGTACCATGGAGGATCCACTGGATGAGATTCCTCTGATTGAGAGGCTAAACAATATAATTATGGTACAATGTGCTAGGCAAGAGCAAATCGCAGACGTTGTGAAGTATTCTGTCCCAGAGTTCATCAGAGGGAAGGATAACAGTATGATTGTGCAACAAGATGCTGAGCAATACTTATCTGATTCAATGAGAGTCTTGGATAGTTCAGCTGATGAATCATTTTGTGGGTCAGTCACCAAAATGGAACAACACATATCTCTCCTACAAAGTAAACAGAAAGCACAAGACCATGCCAGTGCCTATGAGGCAAACAATTTCAACTCTGGACAAGTAATGATACATCATGGCGTTGAGAGTGCAGCTAGTACTGGCAGTAATGAAGCCATTGAAGCTGCAACAACAGCTGGCATGCTGCCAACACCTGAAGACATTCTAGTGACAAGTGATGAAGTTATGATGGAACGCAATTGTGGTTATGAGCTTGATGCTGTCCTGCTGGGTGCTGCTCCCCAACAGCAATCAACTGAAGATATGGGAACATGCATGTTTGCATTAGAGAGAGATAATAGAGCCAAGACAGACAAGGATGAATTAGCATCTTTGAAAGGTACTGAAAAAGAAAATGAAGATGATTCAACATCAAATCAAGCAACAGCAGGTTCTCTTATAGAAGATTGCATAGAAATCAGCAGAAAGAACTCAGGAAACAATGGCATTTCTTCTGATATTCTTGTAAATGCAAGTACTGAATTGGTCAGGACAAAAGTTTCTACAAAAACGCTGTACTATCTTACTAAAATTTGGTTGCTGAAAAATGCTCATGAAAGAGATGCAAGTGACATGAATAGAGATCATGGAGTTTACCAGCCAAGGAGGGAAGTTGGGACGAGGGAAATGATTGAGAAATCGTTTGCAGCTCGAGAAGCCCAAAAGGTTGAGTTGGAAAGAGTAATCAAACATCTGAAGGAACAATTGAGGGATAGGAACCCTTCAAAACTTGATGTATAA

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Protein seq

MAGTEELLVQESTVPIVSDGDPSRPAVRSAHFLLPRAAAGGRPPPLPSSPLCSGGPVPDHHGLLRVVEFKGWAGSPGLWRQWVDRLRPRHEPLWRSVGILDAILATAYRVRRDEGTLLQLAAFWSADTNTFMFPWGEATVTLEDMTVLAGLPLFGKPVRARLPDALVGDVDALMAVRSALHRSKYKKPSYPGWVQYFLKRQEEEDDETAASAGADLIEHGAFLAMWLSLFVFAAPPFDVVGPQVFPIAALLARGIRVALAPAALAGIYGDLSALKRFLDLRDREEEALQVTAPMHILHLWVWERFPQLRPAMATTTIPATTDACRVPMAARWHGVHKALDPQFVHGVFMSPDKFEWRPYGSRSIALPPKEAKAGTWVVQDVMTSNTLLSFTRCLRQCELVGMGCIEQYIRIFGFDQDVPGTIARANSNWKVAWRTYTFGYRKFALVVPHYKLGVTLEYARWWEPYSLACSTDVSNYANTREPHSLFIPMKRNTEELSGANSCKKQHVDTSVPLPGTMEDPLDEIPLIERLNNIIMVQCARQEQIADVVKYSVPEFIRGKDNSMIVQQDAEQYLSDSMRVLDSSADESFCGSVTKMEQHISLLQSKQKAQDHASAYEANNFNSGQVMIHHGVESAASTGSNEAIEAATTAGMLPTPEDILVTSDEVMMERNCGYELDAVLLGAAPQQQSTEDMGTCMFALERDNRAKTDKDELASLKGTEKENEDDSTSNQATAGSLIEDCIEISRKNSGNNGISSDILVNASTELVRTKVSTKTLYYLTKIWLLKNAHERDASDMNRDHGVYQPRREVGTREMIEKSFAAREAQKVELERVIKHLKEQLRDRNPSKLDV

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_03g0023520 OsCMeo_03g0023520.01 Chr03 21243862 21246960 - NAM
CDS seq

ATGGCCGGCACCGAAGAGCTCCTGGTCCAAGAATCCACCGTCCCGATCGTCTCCGACGGCGACCCTTCCCGCCCCGCCGTCCGATCGGCCCACTTCCTCCTCCCCCGCGCGGCCGCCGGTGGCCGGCCCCCGCCCCTGCCCTCCTCCCCGCTCTGCAGTGGCGGCCCCGTTCCTGACCACCACGGCCTCCTCCGGGTGGTGGAGTTCAAGGGCTGGGCTGGCTCCCCTGGCCTGTGGAGGCAGTGGGTCGACAGGCTCCGCCCGCGCCACGAGCCCCTGTGGCGGAGTGTTGGCATCTTGGATGCCATTCTCGCCACGGCTTACCGGGTACGCCGCGACGAGGGCACGCTGCTCCAGCTCGCCGCGTTCTGGTCCGCAGACACCAACACGTTCATGTTCCCGTGGGGCGAGGCCACGGTGACGCTGGAGGACATGACCGTGCTCGCCGGCCTGCCGCTCTTTGGCAAGCCCGTGCGGGCGCGCCTGCCGGACGCTCTTGTCGGGGACGTGGACGCGCTCATGGCCGTTCGGAGCGCCCTGCACCGGAGCAAGTACAAGAAGCCCTCCTATCCTGGGTGGGTGCAGTACTTTCTTAAGCGCCAGGAGGAGGAGGACGACGAGACGGCCGCCAGCGCCGGCGCCGACCTGATCGAGCACGGGGCGTTTCTGGCCATGTGGCTGTCGCTCTTCGTCTTCGCGGCACCGCCGTTCGACGTGGTTGGGCCTCAGGTGTTCCCCATCGCCGCCCTGCTAGCGCGGGGCATCCGCGTGGCGCTCGCGCCCGCCGCGCTCGCCGGCATCTACGGCGACCTCTCCGCGCTCAAGCGCTTCTTGGACTTGCGCGACAGGGAGGAGGAGGCGCTCCAGGTGACGGCGCCGATGCACATTCTCCACCTCTGGGTCTGGGAGCGCTTCCCTCAGCTCCGCCCTGCCATGGCGACCACCACCATCCCTGCAACCACTGATGCTTGCCGTGTGCCAATGGCTGCTCGGTGGCACGGCGTCCACAAGGCGCTGGACCCCCAGTTTGTTCATGGCGTGTTCATGTCACCGGACAAGTTTGAGTGGAGGCCATACGGGAGTCGCAGCATTGCTCTGCCACCCAAGGAAGCTAAGGCTGGCACTTGGGTTGTCCAGGATGTAATGACAAGTAATACGCTGTTATCCTTTACGCGATGTTTGCGCCAATGTGAGCTCGTCGGCATGGGCTGCATTGAGCAATACATCCGCATCTTTGGCTTTGATCAGGATGTGCCTGGGACGATTGCTCGCGCTAACTCAAACTGGAAGGTGGCATGGAGAACATATACGTTTGGCTATCGAAAGTTTGCATTGGTTGTTCCACACTATAAGCTTGGGGTGACACTGGAGTATGCGCGATGGTGGGAGCCATATTCGTTGGCTTGCTCTACTGATGTTTCTAACTATGCAAACACAAGAGAACCCCATTCCCTTTTTATTCCAATGAAAAGAAACACTGAAGAGCTTTCTGGGGCTAATTCTTGCAAAAAGCAGCATGTTGACACCAGTGTGCCTTTACCTGGTACCATGGAGGATCCACTGGATGAGATTCCTCTGATTGAGAGGCTAAACAATATAATTATGGTACAATGTGCTAGGCAAGAGCAAATCGCAGACGTTGTGAAGTATTCTGTCCCAGAGTTCATCAGAGGGAAGGATAACAGTATGATTGTGCAACAAGATGCTGAGCAATACTTATCTGATTCAATGAGAGTCTTGGATAGTTCAGCTGATGAATCATTTTGTGGGTCAGTCACCAAAATGGAACAACACATATCTCTCCTACAAAGTAAACAGAAAGCACAAGACCATGCCAGTGCCTATGAGGCAAACAATTTCAACTCTGGACAAGTAATGATACATCATGGCGTTGAGAGTGCAGCTAGTACTGGCAGTAATGAAGCCATTGAAGCTGCAACAACAGCTGGCATGCTGCCAACACCTGAAGACATTCTAGTGACAAGTGATGAAGTTATGATGGAACGCAATTGTGGTTATGAGCTTGATGCTGTCCTGCTGGGTGCTGCTCCCCAACAGCAATCAACTGAAGATATGGGAACATGCATGTTTGCATTAGAGAGAGATAATAGAGCCAAGACAGACAAGGATGAATTAGCATCTTTGAAAGGTACTGAAAAAGAAAATGAAGATGATTCAACATCAAATCAAGCAACAGCAGGTTCTCTTATAGAAGATTGCATAGAAATCAGCAGAAAGAACTCAGGAAACAATGGCATTTCTTCTGATATTCTTGTAAATGCAAGTACTGAATTGGTCAGGACAAAAGTTTCTACAAAAACGCTGTACTATCTTACTAAAATTTGGTTGCTGAAAAATGCTCATGAAAGAGATGCAAGTGACATGAATAGAGATCATGGAGTTTACCAGCCAAGGAGGGAAGTTGGGACGAGGGAAATGATTGAGAAATCGTTTGCAGCTCGAGAAGCCCAAAAGGTTGAGTTGGAAAGAGTAATCAAACATCTGAAGGAACAATTGAGGGATAGGAACCCTTCAAAACTTGATGTATAA

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Protein seq

MAGTEELLVQESTVPIVSDGDPSRPAVRSAHFLLPRAAAGGRPPPLPSSPLCSGGPVPDHHGLLRVVEFKGWAGSPGLWRQWVDRLRPRHEPLWRSVGILDAILATAYRVRRDEGTLLQLAAFWSADTNTFMFPWGEATVTLEDMTVLAGLPLFGKPVRARLPDALVGDVDALMAVRSALHRSKYKKPSYPGWVQYFLKRQEEEDDETAASAGADLIEHGAFLAMWLSLFVFAAPPFDVVGPQVFPIAALLARGIRVALAPAALAGIYGDLSALKRFLDLRDREEEALQVTAPMHILHLWVWERFPQLRPAMATTTIPATTDACRVPMAARWHGVHKALDPQFVHGVFMSPDKFEWRPYGSRSIALPPKEAKAGTWVVQDVMTSNTLLSFTRCLRQCELVGMGCIEQYIRIFGFDQDVPGTIARANSNWKVAWRTYTFGYRKFALVVPHYKLGVTLEYARWWEPYSLACSTDVSNYANTREPHSLFIPMKRNTEELSGANSCKKQHVDTSVPLPGTMEDPLDEIPLIERLNNIIMVQCARQEQIADVVKYSVPEFIRGKDNSMIVQQDAEQYLSDSMRVLDSSADESFCGSVTKMEQHISLLQSKQKAQDHASAYEANNFNSGQVMIHHGVESAASTGSNEAIEAATTAGMLPTPEDILVTSDEVMMERNCGYELDAVLLGAAPQQQSTEDMGTCMFALERDNRAKTDKDELASLKGTEKENEDDSTSNQATAGSLIEDCIEISRKNSGNNGISSDILVNASTELVRTKVSTKTLYYLTKIWLLKNAHERDASDMNRDHGVYQPRREVGTREMIEKSFAAREAQKVELERVIKHLKEQLRDRNPSKLDV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.783718

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0565900 RBH 0.000000 0.0 0.207187
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g36830 RBH 0.000000 0.0 0.053334
Nipponbare | IRGSP 1.0 | RAP-db Os03g0565900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0023640 RBH 0.0 0.0 0.663320
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0023480 RBH 0.0 0.0 0.333338
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0023550 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0023350 RBH 0.0 0.0 0.395095
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0348500 RBH 0.2665335 0.0217415 0.4819905
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0023120 RBH 0.0 0.0 0.150434
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0350600 RBH 0.125726 0.021931 1.3147635
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0023390 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0023430 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0023520 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0023320 RBH 0.0 0.0 0.380476
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0023190 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G023230 RBH 0.054418 0.0 0.247968
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0023190 RBH 0.0 0.0 1.278114
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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