Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g52070 | OGI:03083480 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:29871085-29878401 | ||||||||
| Gene Symbol | SCP20, OsSCP20 | ||||||||||
| DNA seq | ACTTTTTGCCCATGGCCTCTTGCCATGCATTCATTGGCTTGTCGAAGCTACAAGAGCACTAGCAGAGCAACAAGAGGAAGCCTGCAGCCACGCTCCTCCTGGATCTCCTCACGATGGGTTCGCATCGTCACCGCAGCGCAGGGCAATGCAGCCTCGTGCAGCCGCCACGCCTCATCACCTGCCTTCTCCTACTGCTGCTTCTGCTTCTGTCGCCACCGGCGCTCCCGTGCTCGGCGTCGTCGTCGTCGTCGTCGTCGTCGGTGATCACTCACCTCCCGGGATTCCATGGTCGCCTGCCGTTCTACCTCGAGACTGGGTAAGCACCACTCACCGAGGGCCTGTTTGGGGAGCTTTAGATTTTGAGAAGCAGCCGTTTAGCAGCTAGCTTCTGAGAATCTGGAAAAGCTATGAAACCCAGCTTCTCCAGCTTCTGGCTTCTTAGTTCATTTTTCAGAATCTGTAACCACAGATTCTCAGAAGCTGTGGACTGTTTGGGGCAGCTTCTAGCAGAAGCAGCTTTTGGGAAAAGCTGCAGCTGGGACAAGCTCCACCAAACAGGGCCCGAGAGTCCCATTTTTCTTCAACTGTTACATACTATACGAGCATAAATTCATCATGTAAGAATTGGGTACATATGCACGTACATGTGTACACTGTAGATATATTGGTATCGAGGAGAAGACTGGCACTGAGCTCTTCTACTACTTCGTTGAATCAGAGACGAACCCTGACACGGACCCTTTGGTATTGTGGCTGGTGGGTGGGCCCCGTTGTTCGGCCTTCTCTGGCTTAGCCTACGAAGTAGGTTAGTAGTCCAATGATTATCCAAACCTTTTTATTTAAGAAAATAATCACCCAACCTAACTGTATTGTTCTTGTAAAAAGGGACTATTGTGGTGAATATTAATTATTCGTTCGTGTTAGAATTACGCATATAAATACTTAATTTCCATTGGTGATGATTTTATACAGGTCCTTTGAATTTTGTGTTGGAAGCTTATAATGGTAGTTTGCCAAGATTGGTTTATAATCAGTATTCATGGACACAGGTGATATATATCATTCTCCCAAACCCTCGTGAACTTCCTTTCTACCTCGCTTTTACTTAGTAATTTGTGGTTCAAATTATCAGATGGCAAGCATAATTTTTTTGGATAGTCCTGTCGGTTCTGGTTTCTCATACGCACGTGATTCCAATGGTTACGATGTTGGGGATATATCATCTTCTTTACAAGTGGTCACATTTATGAAGGAGGTGACTAGAAGCAAATTTCATATCCTAGTATATTAAGAATGAAAGAACACTATGTATTTGTATTCTAGTTTATTACTTAATTATCATCTTGTGCATATTAATGTAGTGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTGGAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGGTAATCAACGATACACTTAACATACTATAAAACGAATTAGATGATAATCTAATTTGCAGTTATAACCATATGTTTTAGAACCTTTGTTGTGTTCTTTCAAATATGTACAAAATTGTTAAAAGTTTCAAACTAATCTCAGAAGTCAAATAATGCCGCACGGGAGTGACAAATCCCACCATATTTTTAACTGTTCAACTTGTTCACATGCCAATAATGATTGTGGTACTCTTTTTAGCTAGTCTCTTACCTTGTCTTAATTTCTTCCTACTCACCAGCAATTGAAGAACAAAGGCAACGACCATTGATTGATCTTAAGGCATGCCATTTTTATCTCTCAAACAGTTTATAAAAATTTCGATAATGCAGCATCATGTCTCTTACTATTTCTTGTAAATACAAAATCAGTTACAGGGATATATAGTTGGCAACCCCATAACAGGTTCGAAATTCGATAAAAATTTCCATGTTCCCTATTCTCATGGCGTTGGAATTATATCTGATCAATTATATGAGGTAACATCAAATCCATACACTCAATTTGAGTGGGGTGATACTATTGCATAACATTTTCCTATTCCTCTTTTGAAGGCTGCGGTAACGCATTGCAAAGGAGATTTTGTGAACCCAACAAACCAATTGTGTGCTAACGTCGTATATACTATTAATAAAGTAAGATTATTGCACTGTACTAATTTGTATGTTTACTAATATTCATCTAGTATTATCTTACTGCACAAATCCCATGTGTAGCTCATGTCTGAAGTTTCGGATGGAAATATCTTGGAGGATAAATGTGTTAAAGCTGCACCAAAACCTACAATAGATGTTTCAGCAAGCAGGGCACTGCTGGAAGAATACAGCCGGCTAAGCAAGCCACCTATTCGACCTTCTATGGATTGCGCTGTAAGTCCTTACTATCCATGGGTCCATTGTGTTAATTTGATTGAAGAATGTAGAATTTTCTAAGAAATAGATTTGAGTTTTGATCTCGCTAACACCTAGCCTAAACAAGATCACCAATTCTATTGTGGAATAAAGTGATAGAACTGATCACGGTTAGATAAAGCCATGAATGTCATATGGTCACAATCATTTTCATCTACTCTGCTGTTGGTGTAGGCGAGGCAGGAGACTGGCTTGATGCCAAAGGCGTCGGTGTCTCACTGTAGATGGCTATGGGCATCGTTGTCCTTTTTAACCCACCTTCTCCAATGGCCTTGATCGGTCCTTTGGGTCCCTTCCAGTGCCTCTAAGGATCGAAGGATAGGTTTAGGATTTTTGGTGGAGGACTAAGGCTGTGTTCTTAGGTGCTCACCTCTAACACGGAAAACGGAGCAATGGATTAATGCGTGATTAATTAATTGTTAGCTTAAAAACTTCAAAAATGGATTAATATGATTTTTTAAAAAAACTTTTCTATATAATTTTTTTTTGCAAAACACGCACCGTTTAGTAGTTTGAATAGTGTGCGCGCAATAAACCAGAGAATGAGGTTGGAAACTTAGACTTAAGAACACAACCTAAGGGTACGAGAGATCGTCGTTCATTATACGAGGCCATTCCCTTCTTCAGATATGACATTGGCGGGACTCAGCCTGTCAAATAGAAAGCACAAGCATCTCCAATCATGGTGTAGTCCCTTTAGGAAGGTGTGAGAGACGTGCAGGGTAGACCATGTCCTCTCAAGACTCTGCCCCTGTCGTAGGAGCGTGTGTTCGTAGGTGGATCAGGCCCTTCATGCAGGTCATGGCTTGGTTAGCCAAGATAAACTGATATTAGACGTAAGATTGTGTAGATACATTACATTGCAGTGTTCACCTTCCTCTTTTTGTAATGTTAATTTGCTTATCATTTCTTTCTTGAATTCAGTCATATGGTTACTACCTATCATACTGCTGGATGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAGGTAACCATATGATATGTTCTGCATTTACAAGCATGGGCATATATAGGGGCTTTTCTTATAGAAAAATGATTTTCAAATCGGCAACATCATAACCGTTGCGGGTAAAGAAGATGATATATCCCCAACATAAGAGCATGATTTTGTTAACTAATTAGGTCGCTAAGTAAGTATGACTGATGCACTAATTGTACAAATATGGCTACAGGGAACCATTGGTGAGTGGTTAAGATGAAATAGAGGTGTATTTCCCTATGCTAAAGACATCCCAAACGCCTTGGATTACCATTTTAATCTCACCACAAGAGGTTACCGAGCACTTGTGATGAGGTGAAAGCATCAAAGGAGAAAATTCAGTTATCTGCATCATTCATACATGATGAACATTATTCTGCATCTTAAAATCATAATGATATGTTCATCTGTGAGTGCAGCGGTGACCATGATCTCAAGGTGCCATTTTTGAGCACTCAGGCATGGATAAGATCCTTTAACTTCTTCATAGTTGATGACTGGAGAGCATGGCATGTGGATGGCCAAGCTGCTGGGTTAAGCCATCTAATTCTTTTTTCACATACTCTCAGTTGATGTTATTTTTCATGTTTGCCTGATCTAATGAGGATTATGCATTGCTTTTCTTTTCCTTCTTTTTTGCAGATTCACAATTACGTATGCCAACAACTTGACCTTTGCCACAGTAAAGGTGATTTTATCCTTTAATGTTCTTTCGATTGATCTTTTCTAGTTGATGGATCCTATTTGTGTGCATATAGTGTCCACCCCTTTAGATACATAAGTGACATAAATGAAGAGTTGTGGATGATTCATTTGGTTGGTTGTGCAGGGTGGTTCCCATGTCGCTACAGTAAACAGGCCTAAATAATCTTTCGCCATGGGGAAACGGTGGCTAGCCAATAAGCCTCTATGATGTTGCCAGCTCCTATTTGTCAGAAATGTTTGCAGGGTTTTAACTCAACCATGTGTCTGCTGTCCAAGTGCCATGGTTCTCGAAAAAATACTATTTGTAATGGAGCCCATATAAATAGTGTTCTCTTCTGCCGAAAGGCAGGTTTCACTTAAAGTGAAATGGAAAACACAATAGTTATATATTAATTTCTCTCGAAAAAATTTGATCCCTACTACACATCCATTGGGTTCTATTTATAGGTTTACAAAAATAGTGTTCTCTTCTGCCGAAAGACAGGTTTCACTTAAAGTGAAGTGGAAAGCACAATAGTTGTATATTAACTTCTCTCGAAAAAATGTGTTCCCTATTGCACATCCATTGGGTTCTATTTATAGGTTTACAACTCTAGGATATAGTAGGCTAGTGATTTCACATAACCGTCCTCATGGCTGGGACTCATTTGACCCATCTGACTGGTCCATGGGCCTCACTGGGCTGCAATCACACCACTTGTTGGTCCTCTCTTTATTTTGGTATACTGAGGCCGGCCGTGCTTTGTCGTCCTTTCGCTTTGCTTCACCACCGGCTTGCTTCGCCATGCCTTGCCTCACGCTACCAGGTCTTTGCCTTTTGGTGCTTCGCTCCGTTGTTCCACCTTGCTTCTTGTCGCCTAGTCTTCACCTTGCACCACTTTGTTAGGCTCTAATGTTGCTTCGGCATGTCGGTCGAAGGCCCATAGCTTACCTCCAACAAATAGATAAAAAAATAAGAGTAGAGTGCTTGTGTTATTTTGGTCTCGATGCTCTCAAAATGTAGTTATATGTCTCTATACTTGTCAAGTGTGTCATGCTGGTCTCAAATTGTGTTGATAATCCTATGTAGTGTTGACGTGACATGCCCATTCATGTTAATGTGTCATCTTCAATAACTCTACACTAACTAGCAACTAGGTCATTTTTTTCTTTTTTTTCCTTCTTACTTTTTCCCCTTTTTCTCTCCCCTTTCCTCTTTCTTTTCTTCGAGACGTTGCCAATATTGCTTTCTCTTCTTCTACCTTTGACTAAATCTTTGCCTCGAGGCGGCGCCAAGCTACTCTTCCTCCCTCACCCCTTACCCATGGAGGCCCTTGTCGACGAGAGGGATGATGGACTAGCGAGTCCCTTATGCCTCCTAGCTCAATCTCTGGCTCCTCTATATCCTACCAGCGAGCCTACGTCCACACAACATGCTCCTTCCTACCGCTCCGCGCCATTCCCGCTCCCCACCCTCCACTCCTTCTCTACTTTTGCACCACCGCCCTCCACTGCCACCACGCCTTCTCTTCCACTCCCCCGTTGACCCTCCTTTCTTCTTCCCCATCTCCCGCCGCAAGCTTGAAGCTCACCTCGATAAAAGCATCACCCATGTTCTAGGACCGCATCATCCAGAGGAGCTCCTCCTCCTCATTTAGCCAGCATCCATGCTCTCCTACTCACATCCGTCGACCTCCAGCTTCCTTGATCCCCTTTGTCCCAAAGGGGTTATAAGCAACAACCACAAGAGTGGCGGCAGGCCAGCGACATGGAGGCCATGGCGAGAAGCAATTCAACCGTAGCTATCCTCTCTAGGGTTCAAAATTCCAGAATGAAATTCTAAAATTTCGAAAATTTCGGTTATTGAACCCCCTGATATGATATTATTTTTTCTGAAATTTTTAATTTTTTTGTGAATTTGGCAATATTAGTTTAAACTTATAGACTTACTACCTAAAGCGTAGCGCTTGGATTAGTAAAGAAAATCGCTTCTTTCTACACCCAGCGATCCCACCAACTAACACCACCCTGTCCTCCTCCATTGTTGCGTTCCGAGTAGTAATTCTTTTACAACCTCATCTTGTAAAGTATATGCTACTTTTACTGTAATCAACCAACCGCTTTCTCTCTCCCACTTCATCCCCCCCCAATTTTCTTGGATCTACTACTTCTAGGGTCTCTTTTTTTTCGCTTATGCTTATGCTTATCAGCCAAAATTTGAATTTTCAACCTTAAATTTAGATCTGATTTTGAGATTTTTTCATCGAAGTTTATTTTTCAGCCTTTGCTTTTAGATTGCTAAGAACACGTATATAAAAGTTTTATTCACAAATTATTTTTCGTTTGCAAATATGCCGTCTCGCTTATTCCACGAAGAAGCGATGGCTCCGCATCCGCTAGTATCCATCCACCGTCACAGCCCGTTGATCGATGATGCATCTTGGTGATGATGGCGGTTGGCGCCGGTGACCGGCAAGCAGTGCACGCCAAAGAGGAGAGCCACTGACCGGTGAGGTGGACTGGAGCTAGAGAGCTCGCGCCAAGCGATCTCCTCTCCGTGCCGCTCCTCCTATTGCACCTAAAAAGTGCTTTGTTAAAAAAAAACACATCCCTAAAAATGACAAGTGGTGTTATAGCGCTCGCTAGAAGGCAACTCGACCCTTTTTTAATTGAAGGGAGAATCATACAGGACCACCTCAAACTAGCTAAATAACGAAGGCCCATAAGGGGTATAGTTGTCTCCAGAGAAATGAGCTGGAAGCCTGGAACCATGGCTTCCTTTTTTTTAAGAAAACTGACACAAGGTTACTTTCGTGATAGCTGAATACTTCGAGAAAGGCCATACAGCGAGGTTAATATAGCCAAATTAGATAAAATGGTGCCATATTAATGACTTACAATGACCGGTGAACCTTTCGTTGCAAGCTGCCGTCAGGTGAGGTGAGGAGGTGGCATATTCTCGGCGTCGCGCGGCTGGAGGGTGAGGATGGGTGGGAGGTCGTCTGGCGACCCCTACTCAGTGGCCGCTGCTCGTGCTGTCGATCGGGGCCCTCTTCGCTGCCTCCGTGCGCTGGCCACACCTGCTTCCTCAGCCATGAAAGCGTGTATTTTTTTTCTTTTTTATTTCGTGCAGTGTGGTGTGATCCAATGTACAGTAAAGCATTTATCTCTTGATATATTTTTTGTGTAAAATAATTACTGCATTGAAAGGAAGAC
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| CDS seq | ATGGGTTCGCATCGTCACCGCAGCGCAGGGCAATGCAGCCTCGTGCAGCCGCCACGCCTCATCACCTGCCTTCTCCTACTGCTGCTTCTGCTTCTGTCGCCACCGGCGCTCCCGTGCTCGGCGTCGTCGTCGTCGTCGTCGTCGTCGGTGATCACTCACCTCCCGGGATTCCATGGTCGCCTGCCGTTCTACCTCGAGACTGGATATATTGGTATCGAGGAGAAGACTGGCACTGAGCTCTTCTACTACTTCGTTGAATCAGAGACGAACCCTGACACGGACCCTTTGGTATTGTGGCTGGTGGGTGGGCCCCGTTGTTCGGCCTTCTCTGGCTTAGCCTACGAAGTAGGTCCTTTGAATTTTGTGTTGGAAGCTTATAATGGTAGTTTGCCAAGATTGGTTTATAATCAGTATTCATGGACACAGATGGCAAGCATAATTTTTTTGGATAGTCCTGTCGGTTCTGGTTTCTCATACGCACGTGATTCCAATGGTTACGATGTTGGGGATATATCATCTTCTTTACAAGTGGTCACATTTATGAAGGAGTGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTGGAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGCAATTGAAGAACAAAGGCAACGACCATTGATTGATCTTAAGTTACAGGGATATATAGTTGGCAACCCCATAACAGGTTCGAAATTCGATAAAAATTTCCATGTTCCCTATTCTCATGGCGTTGGAATTATATCTGATCAATTATATGAGGCTGCGGTAACGCATTGCAAAGGAGATTTTGTGAACCCAACAAACCAATTGTGTGCTAACGTCGTATATACTATTAATAAACTCATGTCTGAAGTTTCGGATGGAAATATCTTGGAGGATAAATGTGTTAAAGCTGCACCAAAACCTACAATAGATGTTTCAGCAAGCAGGGCACTGCTGGAAGAATACAGCCGGCTAAGCAAGCCACCTATTCGACCTTCTATGGATTGCGCTTCATATGGTTACTACCTATCATACTGCTGGATGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAGGTAACCATATGCGGTGACCATGATCTCAAGGTGCCATTTTTGAGCACTCAGGCATGGATAAGATCCTTTAACTTCTTCATAGTTGATGACTGGAGAGCATGGCATGTGGATGGCCAAGCTGCTGGATTCACAATTACGTATGCCAACAACTTGACCTTTGCCACAGTAAAGGGTGGTTCCCATGTCGCTACAGTAAACAGGCCTAAATAA
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| Protein seq | MGSHRHRSAGQCSLVQPPRLITCLLLLLLLLLSPPALPCSASSSSSSSSVITHLPGFHGRLPFYLETGYIGIEEKTGTELFYYFVESETNPDTDPLVLWLVGGPRCSAFSGLAYEVGPLNFVLEAYNGSLPRLVYNQYSWTQMASIIFLDSPVGSGFSYARDSNGYDVGDISSSLQVVTFMKEWLNDHPRYRSHNFYVGGASYAGKVVPVIVQYISEAIEEQRQRPLIDLKLQGYIVGNPITGSKFDKNFHVPYSHGVGIISDQLYEAAVTHCKGDFVNPTNQLCANVVYTINKLMSEVSDGNILEDKCVKAAPKPTIDVSASRALLEEYSRLSKPPIRPSMDCASYGYYLSYCWMNDNTTRDALKIKKVTICGDHDLKVPFLSTQAWIRSFNFFIVDDWRAWHVDGQAAGFTITYANNLTFATVKGGSHVATVNRPK |
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| Function | Serine carboxypeptidase-like 18 [UniProtKB/Swiss-Prot:Q9C7Z9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g52070 | LOC_Os03g52070.1 | Chr03 | 29871085 | 29875766 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTTCGCATCGTCACCGCAGCGCAGGGCAATGCAGCCTCGTGCAGCCGCCACGCCTCATCACCTGCCTTCTCCTACTGCTGCTTCTGCTTCTGTCGCCACCGGCGCTCCCGTGCTCGGCGTCGTCGTCGTCGTCGTCGTCGTCGGTGATCACTCACCTCCCGGGATTCCATGGTCGCCTGCCGTTCTACCTCGAGACTGGATATATTGGTATCGAGGAGAAGACTGGCACTGAGCTCTTCTACTACTTCGTTGAATCAGAGACGAACCCTGACACGGACCCTTTGGTATTGTGGCTGGTGGGTGGGCCCCGTTGTTCGGCCTTCTCTGGCTTAGCCTACGAAGTAGGTCCTTTGAATTTTGTGTTGGAAGCTTATAATGGTAGTTTGCCAAGATTGGTTTATAATCAGTATTCATGGACACAGATGGCAAGCATAATTTTTTTGGATAGTCCTGTCGGTTCTGGTTTCTCATACGCACGTGATTCCAATGGTTACGATGTTGGGGATATATCATCTTCTTTACAAGTGGTCACATTTATGAAGGAGTGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTGGAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGCAATTGAAGAACAAAGGCAACGACCATTGATTGATCTTAAGTTACAGGGATATATAGTTGGCAACCCCATAACAGGTTCGAAATTCGATAAAAATTTCCATGTTCCCTATTCTCATGGCGTTGGAATTATATCTGATCAATTATATGAGGCTGCGGTAACGCATTGCAAAGGAGATTTTGTGAACCCAACAAACCAATTGTGTGCTAACGTCGTATATACTATTAATAAACTCATGTCTGAAGTTTCGGATGGAAATATCTTGGAGGATAAATGTGTTAAAGCTGCACCAAAACCTACAATAGATGTTTCAGCAAGCAGGGCACTGCTGGAAGAATACAGCCGGCTAAGCAAGCCACCTATTCGACCTTCTATGGATTGCGCTTCATATGGTTACTACCTATCATACTGCTGGATGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAGGGAACCATTGGTGAGTGGTTAAGATGA
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| Protein seq | MGSHRHRSAGQCSLVQPPRLITCLLLLLLLLLSPPALPCSASSSSSSSSVITHLPGFHGRLPFYLETGYIGIEEKTGTELFYYFVESETNPDTDPLVLWLVGGPRCSAFSGLAYEVGPLNFVLEAYNGSLPRLVYNQYSWTQMASIIFLDSPVGSGFSYARDSNGYDVGDISSSLQVVTFMKEWLNDHPRYRSHNFYVGGASYAGKVVPVIVQYISEAIEEQRQRPLIDLKLQGYIVGNPITGSKFDKNFHVPYSHGVGIISDQLYEAAVTHCKGDFVNPTNQLCANVVYTINKLMSEVSDGNILEDKCVKAAPKPTIDVSASRALLEEYSRLSKPPIRPSMDCASYGYYLSYCWMNDNTTRDALKIKKGTIGEWLR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g52070 | LOC_Os03g52070.2 | Chr03 | 29871167 | 29878401 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTTCGCATCGTCACCGCAGCGCAGGGCAATGCAGCCTCGTGCAGCCGCCACGCCTCATCACCTGCCTTCTCCTACTGCTGCTTCTGCTTCTGTCGCCACCGGCGCTCCCGTGCTCGGCGTCGTCGTCGTCGTCGTCGTCGTCGGTGATCACTCACCTCCCGGGATTCCATGGTCGCCTGCCGTTCTACCTCGAGACTGGATATATTGGTATCGAGGAGAAGACTGGCACTGAGCTCTTCTACTACTTCGTTGAATCAGAGACGAACCCTGACACGGACCCTTTGGTATTGTGGCTGGTGGGTGGGCCCCGTTGTTCGGCCTTCTCTGGCTTAGCCTACGAAGTAGGTCCTTTGAATTTTGTGTTGGAAGCTTATAATGGTAGTTTGCCAAGATTGGTTTATAATCAGTATTCATGGACACAGATGGCAAGCATAATTTTTTTGGATAGTCCTGTCGGTTCTGGTTTCTCATACGCACGTGATTCCAATGGTTACGATGTTGGGGATATATCATCTTCTTTACAAGTGGTCACATTTATGAAGGAGTGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTGGAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGCAATTGAAGAACAAAGGCAACGACCATTGATTGATCTTAAGTTACAGGGATATATAGTTGGCAACCCCATAACAGGTTCGAAATTCGATAAAAATTTCCATGTTCCCTATTCTCATGGCGTTGGAATTATATCTGATCAATTATATGAGGCTGCGGTAACGCATTGCAAAGGAGATTTTGTGAACCCAACAAACCAATTGTGTGCTAACGTCGTATATACTATTAATAAACTCATGTCTGAAGTTTCGGATGGAAATATCTTGGAGGATAAATGTGTTAAAGCTGCACCAAAACCTACAATAGATGTTTCAGCAAGCAGGGCACTGCTGGAAGAATACAGCCGGCTAAGCAAGCCACCTATTCGACCTTCTATGGATTGCGCTTCATATGGTTACTACCTATCATACTGCTGGATGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAGGGAACCATTGGTGAGTGGTTAAGATGA
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| Protein seq | MGSHRHRSAGQCSLVQPPRLITCLLLLLLLLLSPPALPCSASSSSSSSSVITHLPGFHGRLPFYLETGYIGIEEKTGTELFYYFVESETNPDTDPLVLWLVGGPRCSAFSGLAYEVGPLNFVLEAYNGSLPRLVYNQYSWTQMASIIFLDSPVGSGFSYARDSNGYDVGDISSSLQVVTFMKEWLNDHPRYRSHNFYVGGASYAGKVVPVIVQYISEAIEEQRQRPLIDLKLQGYIVGNPITGSKFDKNFHVPYSHGVGIISDQLYEAAVTHCKGDFVNPTNQLCANVVYTINKLMSEVSDGNILEDKCVKAAPKPTIDVSASRALLEEYSRLSKPPIRPSMDCASYGYYLSYCWMNDNTTRDALKIKKGTIGEWLR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g52070 | LOC_Os03g52070.3 | Chr03 | 29871085 | 29875767 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTTCGCATCGTCACCGCAGCGCAGGGCAATGCAGCCTCGTGCAGCCGCCACGCCTCATCACCTGCCTTCTCCTACTGCTGCTTCTGCTTCTGTCGCCACCGGCGCTCCCGTGCTCGGCGTCGTCGTCGTCGTCGTCGTCGTCGGTGATCACTCACCTCCCGGGATTCCATGGTCGCCTGCCGTTCTACCTCGAGACTGGATATATTGGTATCGAGGAGAAGACTGGCACTGAGCTCTTCTACTACTTCGTTGAATCAGAGACGAACCCTGACACGGACCCTTTGGTATTGTGGCTGGTGGGTGGGCCCCGTTGTTCGGCCTTCTCTGGCTTAGCCTACGAAGTAGGTCCTTTGAATTTTGTGTTGGAAGCTTATAATGGTAGTTTGCCAAGATTGGTTTATAATCAGTATTCATGGACACAGATGGCAAGCATAATTTTTTTGGATAGTCCTGTCGGTTCTGGTTTCTCATACGCACGTGATTCCAATGGTTACGATGTTGGGGATATATCATCTTCTTTACAAGTGGTCACATTTATGAAGGAGTGGCTCAATGATCACCCACGCTACCGCTCACATAATTTCTATGTTGGTGGAGCCTCATATGCTGGAAAGGTGGTTCCAGTTATCGTGCAATACATTTCAGAAGCAATTGAAGAACAAAGGCAACGACCATTGATTGATCTTAAGTTACAGGGATATATAGTTGGCAACCCCATAACAGGTTCGAAATTCGATAAAAATTTCCATGTTCCCTATTCTCATGGCGTTGGAATTATATCTGATCAATTATATGAGGCTGCGGTAACGCATTGCAAAGGAGATTTTGTGAACCCAACAAACCAATTGTGTGCTAACGTCGTATATACTATTAATAAACTCATGTCTGAAGTTTCGGATGGAAATATCTTGGAGGATAAATGTGTTAAAGCTGCACCAAAACCTACAATAGATGTTTCAGCAAGCAGGGCACTGCTGGAAGAATACAGCCGGCTAAGCAAGCCACCTATTCGACCTTCTATGGATTGCGCTTCATATGGTTACTACCTATCATACTGCTGGATGAATGACAATACGACTAGAGATGCTCTTAAGATCAAGAAGGTAACCATATGCGGTGACCATGATCTCAAGGTGCCATTTTTGAGCACTCAGGCATGGATAAGATCCTTTAACTTCTTCATAGTTGATGACTGGAGAGCATGGCATGTGGATGGCCAAGCTGCTGGATTCACAATTACGTATGCCAACAACTTGACCTTTGCCACAGTAAAGGGTGGTTCCCATGTCGCTACAGTAAACAGGCCTAAATAA
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| Protein seq | MGSHRHRSAGQCSLVQPPRLITCLLLLLLLLLSPPALPCSASSSSSSSSVITHLPGFHGRLPFYLETGYIGIEEKTGTELFYYFVESETNPDTDPLVLWLVGGPRCSAFSGLAYEVGPLNFVLEAYNGSLPRLVYNQYSWTQMASIIFLDSPVGSGFSYARDSNGYDVGDISSSLQVVTFMKEWLNDHPRYRSHNFYVGGASYAGKVVPVIVQYISEAIEEQRQRPLIDLKLQGYIVGNPITGSKFDKNFHVPYSHGVGIISDQLYEAAVTHCKGDFVNPTNQLCANVVYTINKLMSEVSDGNILEDKCVKAAPKPTIDVSASRALLEEYSRLSKPPIRPSMDCASYGYYLSYCWMNDNTTRDALKIKKVTICGDHDLKVPFLSTQAWIRSFNFFIVDDWRAWHVDGQAAGFTITYANNLTFATVKGGSHVATVNRPK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.329449 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0730500 | RBH | 0.0 | 0.0 | 1.279835 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0730500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033470 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033170 | SBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0033240 | SBH | 0.0 | 0.0 | 0.422440 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033560 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033160 | RBH | 4.530792 | 29.704414 | 38.734978 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0509800 | SBH | 15.8599995 | 12.9050995 | 4.584564 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032920 | SBH | 0.251736 | 1.320932 | 3.012810 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0510800 | RBH | 8.850739 | 7.067128 | 4.8354455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033390 | SBH | 0.059732 | 0.035467 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033380 | SBH | 0.000000 | 20.078350 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033160 | RBH | 0.618060 | 47.915791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033110 | SBH | 0.911613 | 2.295577 | 5.892027 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033120 | SBH | 0.035713 | 4.295040 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032900 | SBH | 0.0 | 0.0 | 0.391659 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032740 | SBH | 0.0 | 0.000000 | 0.168034 |
