Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g39940 | OGI:03064230 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:22197895-22200121 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGGTGGCAACAGGCGGCCTGTCGCACGCCTCGCCCCGTCCCGTCGGAATGATGAGAGCTTCCTGGCTCTCGTCTCTAGCCGGAGCTGGCGTGCTGACTCCTGGAGTTGGTATGTCAGTCCCGGTCAGATCCATTCCAGGCTTCAGCGCAAGCATGGCAAGAAAGTCGCTGGCCATTGAATGAAGGTTGAAACGGGCGTCCACCGGGAGAGCTGACGAGCGGAGCAGGAGGTGTGTGTACTGCTTGTCAGAGGTCATTTCCGGCTGTAGATGAGCCCTCATTGTAAAAAGCATGTTTCTTTTCTTAAGCAGCTAGAGGCCCATGTGGTGACCCCTAACCAGATAAAAAAAAGGAGGCCCAGGCCTAAGAGGGGGGAAGAAGGCGGGCCACTGGATCGAAGAGTCTGAACTCTCTCTCGCTCTCGAGCTCTCTGGCTCTGGAGCTCTCTGCATTCCTTCATACACAGATCCACCAGAACATAGGAGTAGGGTATTACGCTTCTTAGCGGCCCGAACCTGTCTACGTCGCCCGTGTCTTATGCGCTTCTTCTCGCTGACATTCCTCAGATCGAGGGCGAAGAACCTCACTTAGCGCCGCCGGCCGAACCGGCAAAGGGGGGCCTGCGCGGTCTCCCGGTGAGGAGCCCCACGCTCCGTCAACTTGAGGAGCCCCACGCTCCGTCAACTTGCTTCCTCAAAGCCTCTTCTTTCTCTTGCTGCAAAATTCAGTCTGTGATAATGTATTTTCTCCAGGAAGAGAGAGAAAAATGTGGAAATAAATACCTTGTGTTTCTCAACAAGCCGCAAAAGCTCTTCATCTGCCTCCTTCTGCTTTAGATTTGCTAAATTAAGAAGCTCATTCTCCTTTGCATTCTATGAGAGTTTTGAACAACATAAATATACATCAAGATCAAGCAATAGTGACAACAACATAAATAATTCATATTCCTCGAAAAGATCTAGAAATACCTTTTCTTTCTCTGCTACGAGTTTTCCTCTGTCAATATTAGTATTTGTAGCCAAATAATTAAGTTCCTTACATCTCCGGTCAATTTCATGTTTCTTAGCCTGCAGTTCTTCATACAGATTTAGGTTTTCATCAATTATTCTCTTTGAATCTTTGCAAGCATGCTGCTGCAGTTCTATTATATCTGGTCACAAAGAGGAAAAAGGCAAACCCAGAAAATACAGTGAGTACATGCTAACACTATACGGCAAAAGGACAGTGACTTATACAGATCGTACCTTACACATTTAAGAAAACAAGTAGGATATTTTATACTTTGCCCTATGCTATAAAAAAATTAAACATGACCAAGATATATATGTACGTACTTCTATTATGTTCTTCAAACAATTGATCTTTCTCTTCCATCATCCTTTCAAGTTTTAGGCCATTTTGGTTGTTCATAAGCTTCAACTCTTCTAAGTATTTGTTCTTCTCTTCGATTTGGCAAGCATAATGACCCACATGCCTGCCCATTTTTCGCTGGCCTTCATGTTCCAGATCACATACACCTTTAAGCTCTCCATTTTTCCTCAAGTACTTTCCCGTTGGCTCAAGAGAGTTATAGTCATCACTTCTTGCAACCCACCCAAAAAGATCATCTCTTCTACAGTTTATTTTGTTCCAATCAGTTTTACCATACCTCTCCACATTGAAATGCTTTTCAAAAGCCAATGCATCCTTCATTCCATTCCAGTTTTCAGCAAACTTCACGATAGCATAATCTGCATTGTCTGTTGAATTCCAAAGGATAGTTACTTGGAGTGGTTTGAATCGTGAGAATTGTGCTCTTAGCCTCTCCTCGCTTTCCCCAACAAATCCTTTCCCTTTCAACTCAGTTGGCAGATTAACCAGTATACCCATCCATGGCCATACATACTTCTCTTCACTCCCAGGAGGTTGATGCTCAACGGTAGCAAGTTGTGGTGATGATTCCAGTGAGCCAGCTAGATCAACCTTCAGATAGCGAGCAAGTGCTAGGTGTGTCGCCTTAACCTTCGCCTTGCGCTTCGAAGCAGCCCCTACTCCTGAGGCATGCTGCAGAAGATCCTTGGAGCTGTAATCCTGCTTCTTCTTCCCTGGGCAGAATGGGCAACGAAATGTGTTGTTGCCATGCTTCACTTTCACTTTTTCGGCTCTCAGTTGATTATAAGTCTTTTCCTCGTGCACACCAATATCTGAATCACTAACATCAGATTCTTCTGAAGAGCTATGGTCCAT
More
|
||||||||||
| CDS seq | ATGGACCATAGCTCTTCAGAAGAATCTGATGTTAGTGATTCAGATATTGGTGTGCACGAGGAAAAGACTTATAATCAACTGAGAGCCGAAAAAGTGAAAGTGAAGCATGGCAACAACACATTTCGTTGCCCATTCTGCCCAGGGAAGAAGAAGCAGGATTACAGCTCCAAGGATCTTCTGCAGCATGCCTCAGGAGTAGGGGCTGCTTCGAAGCGCAAGGCGAAGGTTAAGGCGACACACCTAGCACTTGCTCGCTATCTGAAGGTTGATCTAGCTGGCTCACTGGAATCATCACCACAACTTGCTACCGTTGAGCATCAACCTCCTGGGAGTGAAGAGAAGTATGTATGGCCATGGATGGGTATACTGGTTAATCTGCCAACTGAGTTGAAAGGGAAAGGATTTGTTGGGGAAAGCGAGGAGAGGCTAAGAGCACAATTCTCACGATTCAAACCACTCCAAGTAACTATCCTTTGGAATTCAACAGACAATGCAGATTATGCTATCGTGAAGTTTGCTGAAAACTGGAATGGAATGAAGGATGCATTGGCTTTTGAAAAGCATTTCAATGTGGAGAGGTATGGTAAAACTGATTGGAACAAAATAAACTGTAGAAGAGATGATCTTTTTGGGTGGGTTGCAAGAAGTGATGACTATAACTCTCTTGAGCCAACGGGAAAGTACTTGAGGAAAAATGGAGAGCTTAAAGGTGTATGTGATCTGGAACATGAAGGCCAGCGAAAAATGGGCAGGCATGTGGGTCATTATGCTTGCCAAATCGAAGAGAAGAACAAATACTTAGAAGAGTTGAAGCTTATGAACAACCAAAATGGCCTAAAACTTGAAAGGATGATGGAAGAGAAAGATCAATTGTTTGAAGAACATAATAGAAATATAATAGAACTGCAGCAGCATGCTTGCAAAGATTCAAAGAGAATAATTGATGAAAACCTAAATCTGTATGAAGAACTGCAGGCTAAGAAACATGAAATTGACCGGAGATGTAAGGAACTTAATTATTTGGCTACAAATACTAATATTGACAGAGGAAAACTCGTAGCAGAGAAAGAAAAGAATGCAAAGGAGAATGAGCTTCTTAATTTAGCAAATCTAAAGCAGAAGGAGGCAGATGAAGAGCTTTTGCGGCTTGTTGAGAAACACAAGCCGGAAATGACCTCTGACAAGCAGTACACACACCTCCTGCTCCGCTCGTCAGCTCTCCCGGTGGACGCCCGTTTCAACCTTCATTCAATGGCCAGCGACTTTCTTGCCATGCTTGCGCTGAAGCCTGGAATGGATCTGACCGGGACTGACATACCAACTCCAGGAGTCAGCACGCCAGCTCCGGCTAGAGACGAGAGCCAGGAAGCTCTCATCATTCCGACGGGACGGGGCGAGGCGTGCGACAGGCCGCCTGTTGCCACCTAA
More
|
||||||||||
| Protein seq | MDHSSSEESDVSDSDIGVHEEKTYNQLRAEKVKVKHGNNTFRCPFCPGKKKQDYSSKDLLQHASGVGAASKRKAKVKATHLALARYLKVDLAGSLESSPQLATVEHQPPGSEEKYVWPWMGILVNLPTELKGKGFVGESEERLRAQFSRFKPLQVTILWNSTDNADYAIVKFAENWNGMKDALAFEKHFNVERYGKTDWNKINCRRDDLFGWVARSDDYNSLEPTGKYLRKNGELKGVCDLEHEGQRKMGRHVGHYACQIEEKNKYLEELKLMNNQNGLKLERMMEEKDQLFEEHNRNIIELQQHACKDSKRIIDENLNLYEELQAKKHEIDRRCKELNYLATNTNIDRGKLVAEKEKNAKENELLNLANLKQKEADEELLRLVEKHKPEMTSDKQYTHLLLRSSALPVDARFNLHSMASDFLAMLALKPGMDLTGTDIPTPGVSTPAPARDESQEALIIPTGRGEACDRPPVAT |
||||||||||
| Function | Protein INVOLVED IN DE NOVO 2 [UniProtKB/Swiss-Prot:Q8VZ79] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g39940 | LOC_Os03g39940.1 | Chr03 | 22197895 | 22200121 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACCATAGCTCTTCAGAAGAATCTGATGTTAGTGATTCAGATATTGGTGTGCACGAGGAAAAGACTTATAATCAACTGAGAGCCGAAAAAGTGAAAGTGAAGCATGGCAACAACACATTTCGTTGCCCATTCTGCCCAGGGAAGAAGAAGCAGGATTACAGCTCCAAGGATCTTCTGCAGCATGCCTCAGGAGTAGGGGCTGCTTCGAAGCGCAAGGCGAAGGTTAAGGCGACACACCTAGCACTTGCTCGCTATCTGAAGGTTGATCTAGCTGGCTCACTGGAATCATCACCACAACTTGCTACCGTTGAGCATCAACCTCCTGGGAGTGAAGAGAAGTATGTATGGCCATGGATGGGTATACTGGTTAATCTGCCAACTGAGTTGAAAGGGAAAGGATTTGTTGGGGAAAGCGAGGAGAGGCTAAGAGCACAATTCTCACGATTCAAACCACTCCAAGTAACTATCCTTTGGAATTCAACAGACAATGCAGATTATGCTATCGTGAAGTTTGCTGAAAACTGGAATGGAATGAAGGATGCATTGGCTTTTGAAAAGCATTTCAATGTGGAGAGGTATGGTAAAACTGATTGGAACAAAATAAACTGTAGAAGAGATGATCTTTTTGGGTGGGTTGCAAGAAGTGATGACTATAACTCTCTTGAGCCAACGGGAAAGTACTTGAGGAAAAATGGAGAGCTTAAAGGTGTATGTGATCTGGAACATGAAGGCCAGCGAAAAATGGGCAGGCATGTGGGTCATTATGCTTGCCAAATCGAAGAGAAGAACAAATACTTAGAAGAGTTGAAGCTTATGAACAACCAAAATGGCCTAAAACTTGAAAGGATGATGGAAGAGAAAGATCAATTGTTTGAAGAACATAATAGAAATATAATAGAACTGCAGCAGCATGCTTGCAAAGATTCAAAGAGAATAATTGATGAAAACCTAAATCTGTATGAAGAACTGCAGGCTAAGAAACATGAAATTGACCGGAGATGTAAGGAACTTAATTATTTGGCTACAAATACTAATATTGACAGAGGAAAACTCGTAGCAGAGAAAGAAAAGAATGCAAAGGAGAATGAGCTTCTTAATTTAGCAAATCTAAAGCAGAAGGAGGCAGATGAAGAGCTTTTGCGGCTTGTTGAGAAACACAAGCCGGAAATGACCTCTGACAAGCAGTACACACACCTCCTGCTCCGCTCGTCAGCTCTCCCGGTGGACGCCCGTTTCAACCTTCATTCAATGGCCAGCGACTTTCTTGCCATGCTTGCGCTGAAGCCTGGAATGGATCTGACCGGGACTGACATACCAACTCCAGGAGTCAGCACGCCAGCTCCGGCTAGAGACGAGAGCCAGGAAGCTCTCATCATTCCGACGGGACGGGGCGAGGCGTGCGACAGGCCGCCTGTTGCCACCTAA
More
|
|||||||
| Protein seq | MDHSSSEESDVSDSDIGVHEEKTYNQLRAEKVKVKHGNNTFRCPFCPGKKKQDYSSKDLLQHASGVGAASKRKAKVKATHLALARYLKVDLAGSLESSPQLATVEHQPPGSEEKYVWPWMGILVNLPTELKGKGFVGESEERLRAQFSRFKPLQVTILWNSTDNADYAIVKFAENWNGMKDALAFEKHFNVERYGKTDWNKINCRRDDLFGWVARSDDYNSLEPTGKYLRKNGELKGVCDLEHEGQRKMGRHVGHYACQIEEKNKYLEELKLMNNQNGLKLERMMEEKDQLFEEHNRNIIELQQHACKDSKRIIDENLNLYEELQAKKHEIDRRCKELNYLATNTNIDRGKLVAEKEKNAKENELLNLANLKQKEADEELLRLVEKHKPEMTSDKQYTHLLLRSSALPVDARFNLHSMASDFLAMLALKPGMDLTGTDIPTPGVSTPAPARDESQEALIIPTGRGEACDRPPVAT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.129103 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g12340 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025370 | RBH | 0.000000 | 0.0 | 5.219666 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025150 | RBH | 0.0 | 0.0 | 3.733927 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025190 | RBH | 0.0 | 0.0 | 10.278910 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025230 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024930 | SBH | 0.000000 | 0.0 | 11.448337 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0387000 | SBH | 0.007927 | 0.038266 | 5.795044 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024730 | SBH | 0.0 | 0.0 | 1.237630 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0387100 | SBH | 0.198808 | 0.014801 | 11.046296 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0025010 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025040 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025130 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024880 | SBH | 0.0 | 0.0 | 0.550319 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024780 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024870 | SBH | 0.0 | 0.0 | 4.113190 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024840 | SBH | 0.0 | 1.695859 | 13.398901 |
