Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g39620 | OGI:03062480 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:22008351-22009220 | ||||||||
| Gene Symbol | BSRD1, ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91 | ||||||||||
| DNA seq | ATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCCTGGGCCTGCCCACGCCGGTGATCAACAAGGAGGTGTACCTCGCCATCTGCCTCACCGTGCTCGCCGGCACGCGGGCGGGGAAGGCCCTGGTGGGCAAGGCCGTCCTAGGGGTGTGCGGTCAGCGCGTCCGCACAGGGCCTCCAATTTCCAGGGACCCCTTAGGTCCAAAACTTCAACACTAGTCTAACTAGTTCCGAAAATCTGTTATTTTTTCTTATCGTTTCGGTTTCGATTACGTCTTTGCTGGTTCGAACAGTTGCGCCGGTTCGCAATCTTGAATCGCCTCCCACTGTGGAACTCGCCAATCGCCAATCACAACGAACGAGAGGAGTAAACGACGCCTTACCTCTCTCTCTCGTGCGGTCGTGCCGCCTAACGCCGTCGCCGCCTGACACCTGTCACGCCCCTGACCTAATTCTTTCCGGTAATTTCTAATCCGATAATCCCTAATTTTGGATTATCATTTTAGGCCATACTAGATTGCTATGAAATATATTACGGAGTATAAATTATTTTCATATTATATCATCAATTAAGTTTTTATCCTTCAACTTTGCACAGGGCCACCCTGCTGGTGGGAGTGGGAGACCAGCAGGAGGTGCAGCCATGTAGGCCTGCAAGCGGTTGTCCCCGAGGTGGCGAGCGGCGGCGCGCACCGTGGACTGGAGGCCACCCTCCGCAACATTGTCCGCCGACCTCTTGCCTTCCTCTCCGCCTCCGGCTCGTGCGGCCCCGCCAATGCTGACATGCGCCACCTCATCGCTCGCCTCCTTGCGAAGGACCCCGCCGCCCGTCTCGGCTCCCACGCGGCGCCACCGACGTGA
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| CDS seq | ATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCCTGGGCCTGCCCACGCCGGTGATCAACAAGGAGGTGTACCTCGCCATCTGCCTCACCGTGCTCGCCGGCACGCGGGCGGGGAAGGCCCTGGTGGGCAAGGCCGTCCTAGGGGTGTGCGTTGCGCCGGTTCGCAATCTTGAATCGCCTCCCACTGTGGAACTCGCCAATCGCCAATCACAACGAACGAGAGGAGTAAACGACGCCTTACCTCTCTCTCTCGTGCGGTCGTGCCGCCTAACGCCGTCGCCGCCTGACACCTGTCACGCCCCTGACCTAATTCTTTCCGGGCCACCCTGCTGGTGGGAGTGGGAGACCAGCAGGAGGTGCAGCCATGTAGGCCTGCAAGCGGTTGTCCCCGAGGTGGCGAGCGGCGGCGCGCACCGTGGACTGGAGGCCACCCTCCGCAACATTGTCCGCCGACCTCTTGCCTTCCTCTCCGCCTCCGGCTCGTGCGGCCCCGCCAATGCTGACATGCGCCACCTCATCGCTCGCCTCCTTGCGAAGGACCCCGCCGCCCGTCTCGGCTCCCACGCGGCGCCACCGACGTGA
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| Protein seq | MTAALQALLDPTALSLGLPTPVINKEVYLAICLTVLAGTRAGKALVGKAVLGVCVAPVRNLESPPTVELANRQSQRTRGVNDALPLSLVRSCRLTPSPPDTCHAPDLILSGPPCWWEWETSRRCSHVGLQAVVPEVASGGAHRGLEATLRNIVRRPLAFLSASGSCGPANADMRHLIARLLAKDPAARLGSHAAPPT |
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| Function | Protein kinase PINOID [UniProtKB/Swiss-Prot:Q2QM77] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g39620 | LOC_Os03g39620.1 | Chr03 | 22008351 | 22009220 | + | MSU_osa1r7 | ||
| CDS seq | ATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCCTGGGCCTGCCCACGCCGGTGATCAACAAGGAGGTGTACCTCGCCATCTGCCTCACCGTGCTCGCCGGCACGCGGGCGGGGAAGGCCCTGGTGGGCAAGGCCGTCCTAGGGGTGTGCGTTGCGCCGGTTCGCAATCTTGAATCGCCTCCCACTGTGGAACTCGCCAATCGCCAATCACAACGAACGAGAGGAGTAAACGACGCCTTACCTCTCTCTCTCGTGCGGTCGTGCCGCCTAACGCCGTCGCCGCCTGACACCTGTCACGCCCCTGACCTAATTCTTTCCGGGCCACCCTGCTGGTGGGAGTGGGAGACCAGCAGGAGGTGCAGCCATGTAGGCCTGCAAGCGGTTGTCCCCGAGGTGGCGAGCGGCGGCGCGCACCGTGGACTGGAGGCCACCCTCCGCAACATTGTCCGCCGACCTCTTGCCTTCCTCTCCGCCTCCGGCTCGTGCGGCCCCGCCAATGCTGACATGCGCCACCTCATCGCTCGCCTCCTTGCGAAGGACCCCGCCGCCCGTCTCGGCTCCCACGCGGCGCCACCGACGTGA
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| Protein seq | MTAALQALLDPTALSLGLPTPVINKEVYLAICLTVLAGTRAGKALVGKAVLGVCVAPVRNLESPPTVELANRQSQRTRGVNDALPLSLVRSCRLTPSPPDTCHAPDLILSGPPCWWEWETSRRCSHVGLQAVVPEVASGGAHRGLEATLRNIVRRPLAFLSASGSCGPANADMRHLIARLLAKDPAARLGSHAAPPT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025160 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024950 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025020 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025030 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024740 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0382500 | RBH | 0 | 0 | 0.025222 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024540 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0382500 | RBH | 0.0096435 | 0 | 0.033524 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027360 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027400 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024600 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024670 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024630 | RBH | 0.0 | 0.0 | 0.0 |
