Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g38375 | OGI:06027190 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:21303435-21306129 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATAAAGCCGCAAATGTTTAGGGACTCACAGAATGTAAAAATTGTTAGCACACAGAGTTCTAAACATAAATACTAGTTTATTTGGAAAACATCGCACATCACAACTCAAAGTAAAGTACAGTTTGGTGCCACCAGATGACTGTCCAGTACCACCAGTGCGTATAAATTCCAAGCGCCTAGAGGCGTCCTTGAGTTGAACAAAGCATTTGCAGGTCAATGGGTCACGGAATAGCGCACAAGCAGCATACCACACACTTCCTCCAATTTCATGGCCATCATTTTCCACCAACTCCATGCACGCATCAAGGCCCATAGACTTCTCTGCTTCCATCTAAGCAGCATGACTCTGGTAGCTCTGCTCTCGGATGTCCGCAATCCTCTCCAAAGCCAGTCCAGCGGAGTCGCTTCGGGACTTCTTGGAAGAACTCCCTGAGGCAGGAGTGTTTGCTGCTGGCCTCTTTCCCTTGCCCCGGTCTGCTGCCGTTGGGGGTGGAGTTGGAGGTGGTGGTCTATAAGCAGCAGCGAGCTGCGCCATGTCGATGGTCTGCCACTGAACTGCTCCTTGCGGTGCGGCTGGGGCTGCCCCTGCGACGGCGGAGTGGTTTCCGACAACTGTGCGCCCACTGAATACCGCGTGGTGAAGGTCAATGTGCTTCAGAGGATCATTCCTGAAGCTTAAGACACCTTTATTTTGCTGCAACATAAGTAGACAGTAAAAACAAGTTAGTACAAGGCAAGTGCATTAGGCTTGTGCAAACATTGAACGTAATGAATATGTGCAGTCCAATGTGCATTACTACTAAAATGCTGGCAGTAAATGTGCACATTGGTACCAAGTTATCAAATATAATCAGGAGTACATGTTACAATGGGCCACACATCTGACAGAATGAAAGAAAGATAGTTTGAACATTGTAAACATAAGATAAACTGCATATGTTATATTCTTTGTAGATGAGCACATTTTTGTTCATTCTCTCTATATACATCAGAAAGAAGGTGTGTACAGCTAGTTGAATATGTATTAACATGTTCCTAAATGACTTGTACAAGATCTTTCCTAATTTACTGATACACTGCATATAGATTTTGTTTATGCAGAGAACAAAACCTATGAGCATTACCATGTTACATTGACTGCTACATTGCATAAGCTAATAGAATGCTACATTGTGTAAGCTATATCCTTCACAATTAAACACATGTGAATCTGTTAAAATGCTTTTGAATGTCACATGTACAAGATCATTTACTTCTCGCAATCATTGCCAATCAGTTCATGGTAAATAGTGTAAACATCATTTTGTTAACTTAAATACAAGGGAATGGCACACATTACTAAAAACGACATGACAGTAACAACTATGAAACATATGTGAGCACAATCCTTCCATTTTACTGCAGCTAGTCATTTGTTGGCACACACAACTTGAACAAAAAAATTATTACACCTCACAAAACTGTATTTATAACTGCATGCATGTACTAAATTTCAGATAATACCTCTTGTAGGAAAAATTGTTGGTTCAAAATATTTATTGTCAAGTGTACGTACCGCATTTTTGCTTTCCTACCACTCATCATCGGCAACAATGGCTGATGTATGGGGATCACGACCCAGCCCGCTTGCATGTGATTCTAGCCACACCCACCTGTTGTACCGCTTCTTACACTGCCCCCAAATGTACTCCAATTGAGCCTTGTTCACCTTCTTCTTACACTTGGTGTACATCTTGTGTATTAGGTTCTGCCATGCCTGCGGCTTGGGGGAGTTGGAGGTGATGGTGAACGCTGCCATCTCCTCCAAGCAGCTCTCAAGAAACACACGAACCTCCATATCGGTCCACCGGCTACGGCCATCGCCCATCTACTACGTGCAAGTCAAACAAAATTGAATCGGAAATGAACAAATTAATACAAACCAATACCTTCGATGACTCTTCCTCACGGACGACGTCCCAATCAATCGAACGGCCGACGGTGGCAGGGCTCACTCTTCGAACAAAGTCGATGACGGCTCTAGGAGACTTGGCGCAAACCTTGTAGAGGGCATGCGCGATATGAAGCACGTCGTCGGGAGCAGCCTTGGCGCTGCCAGCGTCGGAGGTGACAGAGTCGGAGGAGTCCTCGCCGGACTCTAGATCGGCGCCGCGGACAGAGATCTCCCCTGTTTGAGGGGATTGAACAATCGTCCCCTCCTCTTGGATCGACAATAGATCCCGCTCTTGCTTCCGCTTCTTCACTCTCGTCTCCATCGGACCACGCACACGCTCGTCCTGAAATAGAGCTGGCTCCTCAACTCCGCCAGCTTGGATGCCTTGATGAGACTCTTCAAGCCAGCACTGTCTGACCTGAGAGGCCGAGAGGACGAGCACACAGGCAGCCAGACTGCCAAAGATGGGCGGCCTGATGGGCGCCGATGCTTGCTGCTTCACAGCGAGCACGCCGGCCAGCTTTTTCTCCCCTCGAGGACGACGCAGACAGCTCGACAGGCGTGGGGCTCTTCCACTTCCCCCCGATTTTGAGCACCTTGAACCGACCGCTGCCGCAAGACGACGCGCGGACGAGAATCGATTGGGGGGGGGCACGGGCCTGCAAGCCACAGTCGAAAGGGGAGGAGGGTGGCTGGCGAGAATCGGGGAGGACGGGAGCCTACAGCGGAGGGGAATCGATTCTCCTCCAGGCCTGCGTCGCAT
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| CDS seq | ATGCGACGCAGGCCTGGAGGAGAATCGATTCCCCTCCGCTGTAGGCTCCCGTCCTCCCCGATTCTCGCCAGCCACCCTCCTCCCCTTTCGACTGTGGCTTGCAGGCCCGTGCCCCCCCCCAATCGATTCTCGTCCGCGCGTCGTCTTGCGGCAGCGGTCGGTTCAAGGTGCTCAAAATCGGGGGGAAGTGGAAGAGCCCCACGCCTGTCGAGCTGTCTGCGTCGTCCTCGAGGGGAGAAAAAGCTGGCCGGCGTGCTCGCTGTGAAGCAGCAAGCATCGGCGCCCATCAGGCCGCCCATCTTTGGCAGTCTGGCTGCCTGTGTGCTCGTCCTCTCGGCCTCTCAGGTCAGACAGTGCTGGCTTGAAGAGTCTCATCAAGGCATCCAAGCTGGCGGAGTTGAGGAGCCAGCTCTATTTCAGGACGAGCGTGTGCGTGGTCCGATGGAGACGAGAGTGAAGAAGCGGAAGCAAGAGCGGGATCTATTGTCGATCCAAGAGGAGGGGACGATTGTTCAATCCCCTCAAACAGGGGAGATCTCTGTCCGCGGCGCCGATCTAGAGTCCGGCGAGGACTCCTCCGACTCTGTCACCTCCGACGCTGGCAGCGCCAAGGCTGCTCCCGACGACGTGCTTCATATCGCGCATGCCCTCTACAAGGTTTGCGCCAAGTCTCCTAGAGCCGTCATCGACTTTGTTCGAAGAGTGAGCCCTGCCACCGTCGGCCGTTCGATTGATTGGGACGTCGTCCGTGAGGAAGAGTCATCGAAGATGGGCGATGGCCGTAGCCGGTGGACCGATATGGAGGTTCGTGTGTTTCTTGAGAGCTGCTTGGAGGAGATGGCAGCGTTCACCATCACCTCCAACTCCCCCAAGCCGCAGGCATGGCAGAACCTAATACACAAGATGTACACCAAGTGTAAGAAGAAGGTGAACAAGGCTCAATTGGAGTACATTTGGGGGCAGTGTAAGAAGCGGTACAACAGGTGGGTGTGGCTAGAATCACATGCAAGCGGGCTGGGTCGTGATCCCCATACATCAGCCATTGTTGCCGATGATGAGTGCAAAATAAAGGTGTCTTAA
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| Protein seq | MRRRPGGESIPLRCRLPSSPILASHPPPLSTVACRPVPPPNRFSSARRLAAAVGSRCSKSGGSGRAPRLSSCLRRPRGEKKLAGVLAVKQQASAPIRPPIFGSLAACVLVLSASQVRQCWLEESHQGIQAGGVEEPALFQDERVRGPMETRVKKRKQERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALYKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADDECKIKVS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g38375 | LOC_Os03g38375.1 | Chr03 | 21303435 | 21306129 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGACGCAGGCCTGGAGGAGAATCGATTCCCCTCCGCTGTAGGCTCCCGTCCTCCCCGATTCTCGCCAGCCACCCTCCTCCCCTTTCGACTGTGGCTTGCAGGCCCGTGCCCCCCCCCAATCGATTCTCGTCCGCGCGTCGTCTTGCGGCAGCGGTCGGTTCAAGGTGCTCAAAATCGGGGGGAAGTGGAAGAGCCCCACGCCTGTCGAGCTGTCTGCGTCGTCCTCGAGGGGAGAAAAAGCTGGCCGGCGTGCTCGCTGTGAAGCAGCAAGCATCGGCGCCCATCAGGCCGCCCATCTTTGGCAGTCTGGCTGCCTGTGTGCTCGTCCTCTCGGCCTCTCAGGTCAGACAGTGCTGGCTTGAAGAGTCTCATCAAGGCATCCAAGCTGGCGGAGTTGAGGAGCCAGCTCTATTTCAGGACGAGCGTGTGCGTGGTCCGATGGAGACGAGAGTGAAGAAGCGGAAGCAAGAGCGGGATCTATTGTCGATCCAAGAGGAGGGGACGATTGTTCAATCCCCTCAAACAGGGGAGATCTCTGTCCGCGGCGCCGATCTAGAGTCCGGCGAGGACTCCTCCGACTCTGTCACCTCCGACGCTGGCAGCGCCAAGGCTGCTCCCGACGACGTGCTTCATATCGCGCATGCCCTCTACAAGGTTTGCGCCAAGTCTCCTAGAGCCGTCATCGACTTTGTTCGAAGAGTGAGCCCTGCCACCGTCGGCCGTTCGATTGATTGGGACGTCGTCCGTGAGGAAGAGTCATCGAAGATGGGCGATGGCCGTAGCCGGTGGACCGATATGGAGGTTCGTGTGTTTCTTGAGAGCTGCTTGGAGGAGATGGCAGCGTTCACCATCACCTCCAACTCCCCCAAGCCGCAGGCATGGCAGAACCTAATACACAAGATGTACACCAAGTGTAAGAAGAAGGTGAACAAGGCTCAATTGGAGTACATTTGGGGGCAGTGTAAGAAGCGGTACAACAGGTGGGTGTGGCTAGAATCACATGCAAGCGGGCTGGGTCGTGATCCCCATACATCAGCCATTGTTGCCGATGATGAGTGCAAAATAAAGGTGTCTTAA
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| Protein seq | MRRRPGGESIPLRCRLPSSPILASHPPPLSTVACRPVPPPNRFSSARRLAAAVGSRCSKSGGSGRAPRLSSCLRRPRGEKKLAGVLAVKQQASAPIRPPIFGSLAACVLVLSASQVRQCWLEESHQGIQAGGVEEPALFQDERVRGPMETRVKKRKQERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALYKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADDECKIKVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024430 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024240 | RBH | 0.0 | 0.0 | 0.404819 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024310 | RBH | 0.0 | 0.000000 | 0.414278 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024330 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027820 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0030100 | SBH | 0 | 0.2161295 | 0.009132 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002640 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0381400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002430 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024790 | RBH | 0.612962 | 5.274023 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039030 | SBH | 0.0 | 1.240051 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0039130 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026790 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020350 | SBH | 0.0 | 0.0 | 0.0 |
