Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g37920 | OGI:03059330 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:21056815-21059990 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGTAACATTCAGTCTGTTACTGAATGCCTAAACTTTCTACACCCAATTGGAAATAAAATCGAGTTCAACACAGTAAAAGAAGTAAATGAGTACAGATTAATGCACACACCCAAATCCATTCTGAAAAGGCCTACTATTCATTGGAAAATGTAACTTTCTAGCAGACGAGGAAAATGTGCAATCTTGTTGGACTTCAAATAAAAGATTTGTATATCCGCCTTGGATCAAAGGAGTAGGCATGGTCGAAGATTCACCATATACATCATTTGCAACCATGGTTGAAGATTGCCCATACATATCATTTGCATCCATGGTTGAAGATTGCCCATACACATCACCAGCATCTTCATCTCTATTTTCTGACGCATTATTTGGATCTTCAACTATAGGTCACATGGATGTAGCATATAAGAGGATGAAAACAAACAAGATTAAGAGAACAGGAAATAACATGCTACAATGGGTAGGATCAACACATTTCTTCTGCCATTTCTTCTTTTCAACTACATCTTTTGATCGTCGACTTTTTGGGCCTTTCACCACCCGAGGAACTAAAAACGATATAGTACCATTTAATGTGTCCTTGACACAACCATTTGAATTTAGAGGAACCTCACAGGATTTTTCTTGCATCTTGCTTAAAGAATTGTCTGCTTCCAAGTCCAACTTATTTATGGCTTGCTCCAAATCATCAAGAAGTTCTTTCGACACTGAACACTTCAACTCAACGGATGTCGCATGTCGAGAGATACGTGCAGCATGTGCTTTCAAAGTTTCCTTCTCACTTCCTTGTTTCTGAATGTAAAATCCACTCTTTGCATATTTTGTCCATCTATTGAGTATATAATGAGATGGTAAAGTGAAAACTTTATTCATATTGAAGACTCTGAGGGCATGCTTGCACAATAAGCCTATAACATACATGTGCAATTTTTCAAAAATTTGTACTCGAAATCATATTGTAATTTAAATTATGTATACGTACCAATGCATTCATACTTTCTGCAAGAACATGTGATGGTCATCTCTGTAGGGTTGAATACAACAGTCGCTTCGTGATCATATTCCATAGGCATAACCACAAATGTCAAGGTTGCTCCCTCAGTTTTTAACAATTTACATGATAATGTAAATTGTTGTTTAAACTCATCCTCCAACTCTGAATACATGCTCCTAGTATATGATTCAGCTGCAATCTTTAACATAGGTAAATTTGGAATGTAAGTAACCGGGTTCGAGTGTCGGGACTTAAAATCTGCATCCAATTCATTTTCACGGAGAGTAGCTGAAACCTTATCACATTCTACAAGGAGTTCCGAAAGACCGAGTTTCCTACGAAATCTTTTCTTGTAGACATTATTCATACCTTCGCTCCTTTGAGTCGAGGTTATGTCAGCTGTAAAAGAGTTACGGAAGACAATAGCCCACTTCTCCCTTAACTTATATAGGTTTGATATCCATTTGTTATCCTCAAGATTGTATTCACTCAACAATTCATGCCACATCTTGTTGAAGTAATACTCTGATCTGTCTTCATAGACACATCTCTTAAAATCAGCTAGAAACTTGTTAGGATGCTTATGAATTACATGGCTGAGATTTTTACCACCATTAAGATAAATGTGCCACAAACAAAGACGATGGCTTGTATTTCGAAATACAAAAGCAATTGCTGCTGCCATGGCTGCATCTTGATCAGTGAAAATTGTGCTTGGATGCTTGCCTGACATAGCTGTTAGAAAGGTTTCAAAGAGCCAAACAAATGATTCAATAGTTTGGTTAAATAACAATGCAGCCCCAAAAATTATTGTTTGCTTGTGATGGTTGGTTCCAAGGAGTGGAGCAAAAGGCATTTCACACTTATTGGTGTCAAATGTGGTGTCAAATGATACAAAATCACCAAAGCATGCATAATCCATGATAGATTGACCATCTGCCCAAAAGAAATTAGCTATTCGGCCATCTTCTTTGTCTACTTGAATGGCATAAAAAAATGTAGGATCCTCTAACTGCTTATTCCTCAAGTATTCCAGTAGTGTTTGTGTGTCATTGGATTCTAAGTACTTCTTGCGTTCACGACCAATCTCATTATTGCAATCCATCTTTGAGAATGGCACTTTGTCAGCTCCACCATACCACTCCTTCATAAAGCCATACACTTGGGCTGGCTTCATTCCGGCTTCCCTTATCTGGCCAATTAGTTGCCTATCCGCTTCTATAACACGTCGTTGGGACCTCAGCTTGTGCGACTTATTTGGACTGACAAGATCATGGTTGTGTTCAAGTACAACTTTTTGCACCATCCAAATTTCCTTTCGACAAACACTAAACTGAACACGAGCCTTGCAACATGTCCTGGTAGTGTCCAGTGATGAGCTAGTTTCTTGCTGTCCCTGCTTATTGCAAACCATATGCTTTTGATATATAGTTCCATTAGATCGGCGCTTTACATTACTCTTTCTAATACTGAATCCAACCTTCCCGGCATAGGTGTTGTACATCTCATATGCTTTATCCTTTGATTCGAAAGACATTCCAACTTGAGGAACAATCAAAGTTTGCACAACTTTATCATCCACTTTCTGTACAATCAGTTGATAACTAAAGTTATATACTTATATTAACACAATATAAGAAATATTATGATTGTCATGATCATGGTCATCCTTTACATATAGGTGCACATCATCCATCATCAAACAATGCTGATTGAAAAACATGATAATTAAAGAACTAGACGATATTACCTGCGTTATCCGCTCGCCGCCGGCTCCAACATCCCCGGCGATTTCGGCATCCATGGGCGCAGGTGATTGAAATCCATGTCCTTCCTTGCCATGTGCTAGGGCAGGTGAAAACGACACGAGATGAGATGTCCCGGCGGCTGCAGGGTCCTCCTCCTGCCCTTCTCCTGCCATGGAAGCTGATGCAGCTGCGTTGCCCGTGGAGACTTGTCCTGCCATGGCTGCTGCAGTGCTGCGGTTGCCGGCGATTTTGGCCGTGATCTTGGGGCGCAGGATGAGACGTCTCACTCCAAGTCCGCGTAATCCAGGGGCACGCAATAGGAGCTTTCCAATTTCCACACCCACGAGCCGATCGAGCGCGTGCGGCGGCGGCAGACGAACAGGCGCATCGAGGGAAGCGTGAGCGCGGAGGGAGCCGGGACGGGACCGAT
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| CDS seq | ATGGCAGGACAAGTCTCCACGGGCAACGCAGCTGCATCAGCTTCCATGGCAGGAGAAGGGCAGGAGGAGGACCCTGCAGCCGCCGGGACATCTCATCTCGTGTCGTTTTCACCTGCCCTAGCACATGGCAAGGAAGGACATGGATTTCAATCACCTGCGCCCATGGATGCCGAAATCGCCGGGGATGTTGGAGCCGGCGGCGAGCGGATAACGCAGAAAGTGGATGATAAAGTTGTGCAAACTTTGATTGTTCCTCAAGTTGGAATGTCTTTCGAATCAAAGGATAAAGCATATGAGATGTACAACACCTATGCCGGGAAGGTTGGATTCAGTATTAGAAAGAGTAATGTAAAGCGCCGATCTAATGGAACTATATATCAAAAGCATATGGTTTGCAATAAGCAGGGACAGCAAGAAACTAGCTCATCACTGGACACTACCAGGACATGTTGCAAGGCTCGTGTTCAGTTTAGTGTTTGTCGAAAGGAAATTTGGATGGTGCAAAAAGTTGTACTTGAACACAACCATGATCTTGTCAGTCCAAATAAGTCGCACAAGCTGAGGTCCCAACGACGTGTTATAGAAGCGGATAGGCAACTAATTGGCCAGATAAGGGAAGCCGGAATGAAGCCAGCCCAAGTGTATGGCTTTATGAAGGAGTGGTATGGTGGAGCTGACAAAGTGCCATTCTCAAAGATGGATTGCAATAATGAGATTGGTCGTGAACGCAAGAAGTACTTAGAATCCAATGACACACAAACACTACTGGAATACTTGAGGAATAAGCAGTTAGAGGATCCTACATTTTTTTATGCCATTCAAGTAGACAAAGAAGATGGCCGAATAGCTAATTTCTTTTGGGCAGATGGTCAATCTATCATGGATTATGCATGCTTTGGTGATTTTGTATCATTTGACACCACATTTGACACCAATAAGTGTGAAATGCCTTTTGCTCCACTCCTTGGAACCAACCATCACAAGCAAACAATAATTTTTGGGGCTGCATTGTTATTTAACCAAACTATTGAATCATTTGTTTGGCTCTTTGAAACCTTTCTAACAGCTATGTCAGGCAAGCATCCAAGCACAATTTTCACTGATCAAGATGCAGCCATGGCAGCAGCAATTGCTTTTGTATTTCGAAATACAAGCCATCGTCTTTGTTTGTGGCACATTTATCTTAATGGTGGTAAAAATCTCAGCCATGTAATTCATAAGCATCCTAACAAGTTTCTAGCTGATTTTAAGAGATGTGTCTATGAAGACAGATCAGAGTATTACTTCAACAAGATGTGGCATGAATTGTTGAGTGAATACAATCTTGAGGATAACAAATGGATATCAAACCTATATAAGTTAAGGGAGAAGTGGGCTATTGTCTTCCGTAACTCTTTTACAGCTGACATAACCTCGACTCAAAGGAGCGAAGGTATGAATAATGTCTACAAGAAAAGATTTCGTAGGAAACTCGGTCTTTCGGAACTCCTTGTAGAATGTGATAAGGTTTCAGCTACTCTCCGTGAAAATGAATTGGATGCAGATTTTAAGTCCCGACACTCGAACCCGGTTACTTACATTCCAAATTTACCTATGTTAAAGATTGCAGCTGAATCATATACTAGGAGCATGTATTCAGAGTTGGAGGATGAGTTTAAACAACAATTTACATTATCATGTAAATTGTTAAAAACTGAGGGAGCAACCTTGACATTTGTGGTTATGCCTATGGAATATGATCACGAAGCGACTGTTGTATTCAACCCTACAGAGATGACCATCACATGTTCTTGCAGAAAGTATGAATGCATTGGCTTATTGTGCAAGCATGCCCTCAGAGTCTTCAATATGAATAAAGTTTTCACTTTACCATCTCATTATATACTCAATAGATGGACAAAATATGCAAAGAGTGGATTTTACATTCAGAAACAAGGAAGTGAGAAGGAAACTTTGAAAGCACATGCTGCACGTATCTCTCGACATGCGACATCCGTTGAGTTGAAGTGTTCAGTGTCGAAAGAACTTCTTGATGATTTGGAGCAAGCCATAAATAAGTTGGACTTGGAAGCAGACAATTCTTTAAGCAAGATGCAAGAAAAATCCTGTGAGGTTCCTCTAAATTCAAATGGTTGTGTCAAGGACACATTAAATGGTACTATATCGTTTTTAGTTCCTCGGGTGGTGAAAGGCCCAAAAAGTCGACGATCAAAAGATGTAGTTGAAAAGAAGAAATGGCAGAAGAAATGTGTTGATCCTACCCATTGTAGCATGTTATTTCCTGTTCTCTTAATCTTGTTTGTTTTCATCCTCTTATATGCTACATCCATGTGA
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| Protein seq | MAGQVSTGNAAASASMAGEGQEEDPAAAGTSHLVSFSPALAHGKEGHGFQSPAPMDAEIAGDVGAGGERITQKVDDKVVQTLIVPQVGMSFESKDKAYEMYNTYAGKVGFSIRKSNVKRRSNGTIYQKHMVCNKQGQQETSSSLDTTRTCCKARVQFSVCRKEIWMVQKVVLEHNHDLVSPNKSHKLRSQRRVIEADRQLIGQIREAGMKPAQVYGFMKEWYGGADKVPFSKMDCNNEIGRERKKYLESNDTQTLLEYLRNKQLEDPTFFYAIQVDKEDGRIANFFWADGQSIMDYACFGDFVSFDTTFDTNKCEMPFAPLLGTNHHKQTIIFGAALLFNQTIESFVWLFETFLTAMSGKHPSTIFTDQDAAMAAAIAFVFRNTSHRLCLWHIYLNGGKNLSHVIHKHPNKFLADFKRCVYEDRSEYYFNKMWHELLSEYNLEDNKWISNLYKLREKWAIVFRNSFTADITSTQRSEGMNNVYKKRFRRKLGLSELLVECDKVSATLRENELDADFKSRHSNPVTYIPNLPMLKIAAESYTRSMYSELEDEFKQQFTLSCKLLKTEGATLTFVVMPMEYDHEATVVFNPTEMTITCSCRKYECIGLLCKHALRVFNMNKVFTLPSHYILNRWTKYAKSGFYIQKQGSEKETLKAHAARISRHATSVELKCSVSKELLDDLEQAINKLDLEADNSLSKMQEKSCEVPLNSNGCVKDTLNGTISFLVPRVVKGPKSRRSKDVVEKKKWQKKCVDPTHCSMLFPVLLILFVFILLYATSM |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g37920 | LOC_Os03g37920.1 | Chr03 | 21056815 | 21059990 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGGACAAGTCTCCACGGGCAACGCAGCTGCATCAGCTTCCATGGCAGGAGAAGGGCAGGAGGAGGACCCTGCAGCCGCCGGGACATCTCATCTCGTGTCGTTTTCACCTGCCCTAGCACATGGCAAGGAAGGACATGGATTTCAATCACCTGCGCCCATGGATGCCGAAATCGCCGGGGATGTTGGAGCCGGCGGCGAGCGGATAACGCAGAAAGTGGATGATAAAGTTGTGCAAACTTTGATTGTTCCTCAAGTTGGAATGTCTTTCGAATCAAAGGATAAAGCATATGAGATGTACAACACCTATGCCGGGAAGGTTGGATTCAGTATTAGAAAGAGTAATGTAAAGCGCCGATCTAATGGAACTATATATCAAAAGCATATGGTTTGCAATAAGCAGGGACAGCAAGAAACTAGCTCATCACTGGACACTACCAGGACATGTTGCAAGGCTCGTGTTCAGTTTAGTGTTTGTCGAAAGGAAATTTGGATGGTGCAAAAAGTTGTACTTGAACACAACCATGATCTTGTCAGTCCAAATAAGTCGCACAAGCTGAGGTCCCAACGACGTGTTATAGAAGCGGATAGGCAACTAATTGGCCAGATAAGGGAAGCCGGAATGAAGCCAGCCCAAGTGTATGGCTTTATGAAGGAGTGGTATGGTGGAGCTGACAAAGTGCCATTCTCAAAGATGGATTGCAATAATGAGATTGGTCGTGAACGCAAGAAGTACTTAGAATCCAATGACACACAAACACTACTGGAATACTTGAGGAATAAGCAGTTAGAGGATCCTACATTTTTTTATGCCATTCAAGTAGACAAAGAAGATGGCCGAATAGCTAATTTCTTTTGGGCAGATGGTCAATCTATCATGGATTATGCATGCTTTGGTGATTTTGTATCATTTGACACCACATTTGACACCAATAAGTGTGAAATGCCTTTTGCTCCACTCCTTGGAACCAACCATCACAAGCAAACAATAATTTTTGGGGCTGCATTGTTATTTAACCAAACTATTGAATCATTTGTTTGGCTCTTTGAAACCTTTCTAACAGCTATGTCAGGCAAGCATCCAAGCACAATTTTCACTGATCAAGATGCAGCCATGGCAGCAGCAATTGCTTTTGTATTTCGAAATACAAGCCATCGTCTTTGTTTGTGGCACATTTATCTTAATGGTGGTAAAAATCTCAGCCATGTAATTCATAAGCATCCTAACAAGTTTCTAGCTGATTTTAAGAGATGTGTCTATGAAGACAGATCAGAGTATTACTTCAACAAGATGTGGCATGAATTGTTGAGTGAATACAATCTTGAGGATAACAAATGGATATCAAACCTATATAAGTTAAGGGAGAAGTGGGCTATTGTCTTCCGTAACTCTTTTACAGCTGACATAACCTCGACTCAAAGGAGCGAAGGTATGAATAATGTCTACAAGAAAAGATTTCGTAGGAAACTCGGTCTTTCGGAACTCCTTGTAGAATGTGATAAGGTTTCAGCTACTCTCCGTGAAAATGAATTGGATGCAGATTTTAAGTCCCGACACTCGAACCCGGTTACTTACATTCCAAATTTACCTATGTTAAAGATTGCAGCTGAATCATATACTAGGAGCATGTATTCAGAGTTGGAGGATGAGTTTAAACAACAATTTACATTATCATGTAAATTGTTAAAAACTGAGGGAGCAACCTTGACATTTGTGGTTATGCCTATGGAATATGATCACGAAGCGACTGTTGTATTCAACCCTACAGAGATGACCATCACATGTTCTTGCAGAAAGTATGAATGCATTGGCTTATTGTGCAAGCATGCCCTCAGAGTCTTCAATATGAATAAAGTTTTCACTTTACCATCTCATTATATACTCAATAGATGGACAAAATATGCAAAGAGTGGATTTTACATTCAGAAACAAGGAAGTGAGAAGGAAACTTTGAAAGCACATGCTGCACGTATCTCTCGACATGCGACATCCGTTGAGTTGAAGTGTTCAGTGTCGAAAGAACTTCTTGATGATTTGGAGCAAGCCATAAATAAGTTGGACTTGGAAGCAGACAATTCTTTAAGCAAGATGCAAGAAAAATCCTGTGAGGTTCCTCTAAATTCAAATGGTTGTGTCAAGGACACATTAAATGGTACTATATCGTTTTTAGTTCCTCGGGTGGTGAAAGGCCCAAAAAGTCGACGATCAAAAGATGTAGTTGAAAAGAAGAAATGGCAGAAGAAATGTGTTGATCCTACCCATTGTAGCATGTTATTTCCTGTTCTCTTAATCTTGTTTGTTTTCATCCTCTTATATGCTACATCCATGTGA
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| Protein seq | MAGQVSTGNAAASASMAGEGQEEDPAAAGTSHLVSFSPALAHGKEGHGFQSPAPMDAEIAGDVGAGGERITQKVDDKVVQTLIVPQVGMSFESKDKAYEMYNTYAGKVGFSIRKSNVKRRSNGTIYQKHMVCNKQGQQETSSSLDTTRTCCKARVQFSVCRKEIWMVQKVVLEHNHDLVSPNKSHKLRSQRRVIEADRQLIGQIREAGMKPAQVYGFMKEWYGGADKVPFSKMDCNNEIGRERKKYLESNDTQTLLEYLRNKQLEDPTFFYAIQVDKEDGRIANFFWADGQSIMDYACFGDFVSFDTTFDTNKCEMPFAPLLGTNHHKQTIIFGAALLFNQTIESFVWLFETFLTAMSGKHPSTIFTDQDAAMAAAIAFVFRNTSHRLCLWHIYLNGGKNLSHVIHKHPNKFLADFKRCVYEDRSEYYFNKMWHELLSEYNLEDNKWISNLYKLREKWAIVFRNSFTADITSTQRSEGMNNVYKKRFRRKLGLSELLVECDKVSATLRENELDADFKSRHSNPVTYIPNLPMLKIAAESYTRSMYSELEDEFKQQFTLSCKLLKTEGATLTFVVMPMEYDHEATVVFNPTEMTITCSCRKYECIGLLCKHALRVFNMNKVFTLPSHYILNRWTKYAKSGFYIQKQGSEKETLKAHAARISRHATSVELKCSVSKELLDDLEQAINKLDLEADNSLSKMQEKSCEVPLNSNGCVKDTLNGTISFLVPRVVKGPKSRRSKDVVEKKKWQKKCVDPTHCSMLFPVLLILFVFILLYATSM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028570 | SBH | 1.535698 | 15.139445 | 5.946884 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0028270 | SBH | 0.591290 | 5.858015 | 3.907576 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028370 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0028450 | SBH | 0.637942 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0028110 | SBH | 13.447306 | 24.148018 | 25.384413 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0362700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0031840 | SBH | 0.136016 | 0.000000 | 0.925078 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0364700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028190 | SBH | 0.487824 | 0.166074 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026700 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0028250 | SBH | 9.822657 | 27.824648 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0028030 | SBH | 0.812701 | 2.598344 | 2.006791 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0032070 | SBH | 0.000000 | 3.209117 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027950 | SBH | 1.357830 | 4.785180 | 2.571185 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027970 | SBH | 0.0 | 0.0 | 0.0 |
