Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0028270 | OGI:03072940 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:26607394-26612297 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | catgaggagcttgtcaattgtatcaacatgcctgagacaattgatgagtttgaagtaaactttaaggcattaatttctaaggttggcccaggaaatagcgagtggctctattcagtgtataattgccgtcaacattgggtccccgtgtacttgagggatacattttttggtgacgagtcatcaaaggaggagtgtgcaagcaggagttcatttttcgatggttatatcagtgcaaaaactgatccacagtcattcatccagcagtatgaaaaggctctggactgttgttatgagaaggaggtgaaggaagaatttgagacaaagtactcacttccagaaatcaagacatcatctcctattgagaaacaaggcgcagacttatacacgaggtcaatgtttttgaaattccaacaggaacttgttgatgcctctgtttcctctctggaagtaatgaaggaggatggcaaatctcgcatatataaagtgaccaaatctgcaggaagtgagaagcctcatatggttgaattcaattcttttggaagttctgcaacatgtagctgtcagatgtttgaacatttaggtattgtctgtaggcacatacttactgtctttggcacacaaggtgtatcttcacttccttcccagtacattgtaaaaaggtggactaaatatgccatggaaagaagtccagacaagaaaattgatgaagttagcaaagtcaatgagcccaaggaggagcaaaaaagtggtgccgaagatggtgagcaatctcagacatggcgctacaacagtttatgtcgcgaagcacttagatatgctgaagaaggagcatcatcagtagaggtttatattgtagcaatgcaggctcttcaagaggctgcaaacaaggtcaatatggcaaaaagaggtatcggacaggtagcaccaaatgcaccattggcagtgatgccaattgcagcccaactaccagctgaaggcttcagaaatgtcccggagattagttttaatcagagaaagaagagaaaaaggaattcaaacaacaaaacaacagagaattcatcaaatcaacttatgtatctacaacagcctgtcaattttttgtttgttgctcctggtacatcaagtggtccacaagggccttctcaaatagttgctgcagttcctgtttcttcgagtgcgccacacggtcagacgtctagtgcaaaccacccaagtgatggaaataccacatcctgttctgtagctgctcaaaaaaattccgacttgtccaactacagtggatcagcaccttctttgggaaatgttgtgccagaaggagaaattaaatcttcagggtttgcttcacaaataaaagaggtaattttctatagtgactgccagaagtttcatattctatgcatttgcttttagtatcatgcttaggataaccaaggattataacctaaatatatacttcgtccattcttttgtcgatgatttttatggagagtttcttgttatttcataagtgatattcaacatttacatttccggtacaaatataatcatatcttcctaaactaccattttcttgtttgatatgcactcccattgatgacttgcactattggtagggcctcttaggatgaataaatttagagagaatatactctatgccactgagtttgtcatagttctcaataaattgccatttacattgcccctttctatagtataatgacgattttatcaattgttctacaatatgtcattgggctgagcttttttttttcttcccgaaataccctttgagacatacaagattaacaattgatttatctcattacaagtttcaatgaaatatgggaatttttatctagactccttacacaacattgaaatttgtatataagtttcaagttttttttgggtatttttatttttaaaatattttttgtgtgatatatgagagaaattgcttacacaaaagataatagcacaaaattattttgtgtagcatataaaagatgatttacattaaaaacaaaaatgcaaaaatatattttatatagcatataacagataaattgtatcttacaaaaaagtagaaatgcaagaattttgaaacttttacacaaacctccacattgtgtaaagatgctacattaaaaaatcattttttttgaaacttctgataggataaatcatatttaatgaggtatcaagaaacacatttaataggtttatgttactcatcatgcgcatatattatggttacaagagacactattggtagggcttgaacatcttttctgttttgtatttccattttagattgtggtctgtcatctaaattttttatcaacgaacagtggggttcatgcaggcaatattatggtcacatataaccaatgaatgataattctgtttacagttgagcacaatgagacatattattccctttgcttcttgccctgcatctcctattgttcctatttttcctttttctgtcgcatcatgacatcaaaatgaacactatataaagcttttctttgttcattcatttgagcttgctgattgattgggtataccattatggaaaaggattagtgaagctttacctgaagcatgactgcttttagggagaatattagctttttacttgagtgatcgtagagatctgatcatttttgaatttagctataaatgatattgtaaagaagggttatttaatcatcgtgttgtgcttaatattctcacttttgtgtacttaattaataatgttaaaaaaatatctgatggtccagataaaaatattggtggggatcattaataggattaactatgtgagagaaccaaggttttaggtcacattttagtatgcatttaataaacaagtgttgatttgtaactcagtttttccaatttgttttgtgacatgctcactttctcagatttaccccgttactcattaataccttgcagataatcttgaaactttcacctgttctgtatagcaagcttaatacactatgaaaatgacattgatatggtcaattcatttgaaatgggagctgtcactttttggtaatttatacgaacttctattgctgatattttgggtatggtatgtttgtttggtatcaattctgtgtgtttacaaatacccccaatgttcggtagtttatgagaactcgggattatttatctttttaagtgatctttttggttaatcgggggcattctcccctagctgtaacttaccaaccaaatttgtgtttgtagcccaacagctgtaacctacttggaggtgaaaatttagatcccagtcaatagttctggaaggccttatgctattgaaacatctccctttcatttaaggaaaatcaactggtttattattgaagattttttttcattcaatttcgcctgtgatatcattgtccggaacataactattacattagctgtaattttactttgtgtggtttgatcagaaaacatttttatcagtctttatgtgttgcttactattacattacacttttgtatttctagtcctcttagaaaaaccaagtgagttgccttcaggcaatacaagatctaatatggcggccagttatttttgattcatttatccaagacccagcttatagaccttgccaatctgcttattttagctccaagtatagcttatttatcagtcttcaagacactgatcttgatgaattctgcagagtcatgaattgtcccaaggtaatggcaacaagggaaacaacgtgaacatggcaagttctacatcctcgccacagcttgtgacagtcccggttggactgtgcttgccttcaatggacagctcgaagatatctgcaggtttcttttgacactattatacttcgctactcaaatatgttgatgtccctaacatctagtgccagttgtgcatacagattttgccaattattgcaaatcatcctcgctgttaagtttgtgccatgacatatatatatgtttgtttcattggtgcatgctagtaatttgactgtttaaatatgaatacttatcgacaattcttctgactgaaactcatttacatcttattgtcgatgcagatgcgattaattctacgaactctggcagcatgattagcaatggcaatgtgtcattcggtctttgtcaatctcaatctaccaatgctgatcctcggtcaactcccgagggttcttctattagggcagcagccatcgcagcaggtgcacgcattgcatctccatctgatgccgcttcaatcataaaagcggcacagtcaaaaggtgctatccacattaggcctggagaaggcgtcccaaattatctgaaaccattagccccacaaccgctctcctcgctaccaccaggcagcatacccaattcagtgcatccttcctcaagccatgcacaaccaggacagtgcagctttggtgattctgcagcagcaaaggatgcaatttttggttccacagacagcagtgatgacgatgagtatgatgaagatgatgacactgacgataacgatgaagatgaggggataaccggtgacgaggtggagcaagaataatcttcacattggcacctcgtcggctcttcagctgtatttgtactaacctctcctagtggcttctgaggccctgatctttaacaaaccttttcacccatggattctcttagagcatagctgtatacatgtttatagcctgtatttaagctcccaattactgccttcatgagcctagaagttatccccccccccttcctaccctctcgattaagcatgcctggaagtccctttttgtcaacctaatcagaaacattgagcattgttaatcttggtttgttttggctctttcaggggtttggtcaaatggtcagctcaaatgtgaggttat
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| CDS seq | atgcctgagacaattgatgagtttgaagtaaactttaaggcattaatttctaaggttggcccaggaaatagcgagtggctctattcagtgtataattgccgtcaacattgggtccccgtgtacttgagggatacattttttggtgacgagtcatcaaaggaggagtgtgcaagcaggagttcatttttcgatggttatatcagtgcaaaaactgatccacagtcattcatccagcagtatgaaaaggctctggactgttgttatgagaaggaggtgaaggaagaatttgagacaaagtactcacttccagaaatcaagacatcatctcctattgagaaacaaggcgcagacttatacacgaggtcaatgtttttgaaattccaacaggaacttgttgatgcctctgtttcctctctggaagtaatgaaggaggatggcaaatctcgcatatataaagtgaccaaatctgcaggaagtgagaagcctcatatggttgaattcaattcttttggaagttctgcaacatgtagctgtcagatgtttgaacatttaggtattgtctgtaggcacatacttactgtctttggcacacaaggtgtatcttcacttccttcccagtacattgtaaaaaggtggactaaatatgccatggaaagaagtccagacaagaaaattgatgaagttagcaaagtcaatgagcccaaggaggagcaaaaaagtggtgccgaagatggtgagcaatctcagacatggcgctacaacagtttatgtcgcgaagcacttagatatgctgaagaaggagcatcatcagtagaggtttatattgtagcaatgcaggctcttcaagaggctgcaaacaaggtcaatatggcaaaaagaggtatcggacaggtagcaccaaatgcaccattggcagtgatgccaattgcagcccaactaccagctgaaggcttcagaaatgtcccggagattagttttaatcagagaaagaagagaaaaaggaattcaaacaacaaaacaacagagaattcatcaaatcaacttatgtatctacaacagcctgtcaattttttgtttgttgctcctggtacatcaagtggtccacaagggccttctcaaatagttgctgcagttcctgtttcttcgagtgcgccacacggtcagacgtctagtgcaaaccacccaagtgatggaaataccacatcctgttctgtagctgctcaaaaaaattccgacttgtccaactacagtggatcagcaccttctttgggaaatgttgtgccagaaggagaaattaaatcttcagggtttgcttcacaaataaaagagagtcatgaattgtcccaaggtaatggcaacaagggaaacaacgtgaacatggcaagttctacatcctcgccacagcttgtgacagtcccggttggactgtgcttgccttcaatggacagctcgaagatatctgcagatgcgattaattctacgaactctggcagcatgattagcaatggcaatgtgtcattcggtctttgtcaatctcaatctaccaatgctgatcctcggtcaactcccgagggttcttctattagggcagcagccatcgcagcaggtgcacgcattgcatctccatctgatgccgcttcaatcataaaagcggcacagtcaaaaggtgctatccacattaggcctggagaaggcgtcccaaattatctgaaaccattagccccacaaccgctctcctcgctaccaccaggcagcatacccaattcagtgcatccttcctcaagccatgcacaaccaggacagtgcagctttggtgattctgcagcagcaaaggatgcaatttttggttccacagacagcagtgatgacgatgagtatgatgaagatgatgacactgacgataacgatgaagatgaggggataaccggtgacgaggtggagcaagaa
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| Protein seq | MPETIDEFEVNFKALISKVGPGNSEWLYSVYNCRQHWVPVYLRDTFFGDESSKEECASRSSFFDGYISAKTDPQSFIQQYEKALDCCYEKEVKEEFETKYSLPEIKTSSPIEKQGADLYTRSMFLKFQQELVDASVSSLEVMKEDGKSRIYKVTKSAGSEKPHMVEFNSFGSSATCSCQMFEHLGIVCRHILTVFGTQGVSSLPSQYIVKRWTKYAMERSPDKKIDEVSKVNEPKEEQKSGAEDGEQSQTWRYNSLCREALRYAEEGASSVEVYIVAMQALQEAANKVNMAKRGIGQVAPNAPLAVMPIAAQLPAEGFRNVPEISFNQRKKRKRNSNNKTTENSSNQLMYLQQPVNFLFVAPGTSSGPQGPSQIVAAVPVSSSAPHGQTSSANHPSDGNTTSCSVAAQKNSDLSNYSGSAPSLGNVVPEGEIKSSGFASQIKESHELSQGNGNKGNNVNMASSTSSPQLVTVPVGLCLPSMDSSKISADAINSTNSGSMISNGNVSFGLCQSQSTNADPRSTPEGSSIRAAAIAAGARIASPSDAASIIKAAQSKGAIHIRPGEGVPNYLKPLAPQPLSSLPPGSIPNSVHPSSSHAQPGQCSFGDSAAAKDAIFGSTDSSDDDEYDEDDDTDDNDEDEGITGDEVEQE |
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| Function | Protein FAR1-RELATED SEQUENCE 9 [UniProtKB/Swiss-Prot:Q9SZL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0028270 | OsKeNa_03g0028270.01 | Chr03 | 26607394 | 26612297 | + | NAM | ||
| CDS seq | atgcctgagacaattgatgagtttgaagtaaactttaaggcattaatttctaaggttggcccaggaaatagcgagtggctctattcagtgtataattgccgtcaacattgggtccccgtgtacttgagggatacattttttggtgacgagtcatcaaaggaggagtgtgcaagcaggagttcatttttcgatggttatatcagtgcaaaaactgatccacagtcattcatccagcagtatgaaaaggctctggactgttgttatgagaaggaggtgaaggaagaatttgagacaaagtactcacttccagaaatcaagacatcatctcctattgagaaacaaggcgcagacttatacacgaggtcaatgtttttgaaattccaacaggaacttgttgatgcctctgtttcctctctggaagtaatgaaggaggatggcaaatctcgcatatataaagtgaccaaatctgcaggaagtgagaagcctcatatggttgaattcaattcttttggaagttctgcaacatgtagctgtcagatgtttgaacatttaggtattgtctgtaggcacatacttactgtctttggcacacaaggtgtatcttcacttccttcccagtacattgtaaaaaggtggactaaatatgccatggaaagaagtccagacaagaaaattgatgaagttagcaaagtcaatgagcccaaggaggagcaaaaaagtggtgccgaagatggtgagcaatctcagacatggcgctacaacagtttatgtcgcgaagcacttagatatgctgaagaaggagcatcatcagtagaggtttatattgtagcaatgcaggctcttcaagaggctgcaaacaaggtcaatatggcaaaaagaggtatcggacaggtagcaccaaatgcaccattggcagtgatgccaattgcagcccaactaccagctgaaggcttcagaaatgtcccggagattagttttaatcagagaaagaagagaaaaaggaattcaaacaacaaaacaacagagaattcatcaaatcaacttatgtatctacaacagcctgtcaattttttgtttgttgctcctggtacatcaagtggtccacaagggccttctcaaatagttgctgcagttcctgtttcttcgagtgcgccacacggtcagacgtctagtgcaaaccacccaagtgatggaaataccacatcctgttctgtagctgctcaaaaaaattccgacttgtccaactacagtggatcagcaccttctttgggaaatgttgtgccagaaggagaaattaaatcttcagggtttgcttcacaaataaaagagagtcatgaattgtcccaaggtaatggcaacaagggaaacaacgtgaacatggcaagttctacatcctcgccacagcttgtgacagtcccggttggactgtgcttgccttcaatggacagctcgaagatatctgcagatgcgattaattctacgaactctggcagcatgattagcaatggcaatgtgtcattcggtctttgtcaatctcaatctaccaatgctgatcctcggtcaactcccgagggttcttctattagggcagcagccatcgcagcaggtgcacgcattgcatctccatctgatgccgcttcaatcataaaagcggcacagtcaaaaggtgctatccacattaggcctggagaaggcgtcccaaattatctgaaaccattagccccacaaccgctctcctcgctaccaccaggcagcatacccaattcagtgcatccttcctcaagccatgcacaaccaggacagtgcagctttggtgattctgcagcagcaaaggatgcaatttttggttccacagacagcagtgatgacgatgagtatgatgaagatgatgacactgacgataacgatgaagatgaggggataaccggtgacgaggtggagcaagaa
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| Protein seq | MPETIDEFEVNFKALISKVGPGNSEWLYSVYNCRQHWVPVYLRDTFFGDESSKEECASRSSFFDGYISAKTDPQSFIQQYEKALDCCYEKEVKEEFETKYSLPEIKTSSPIEKQGADLYTRSMFLKFQQELVDASVSSLEVMKEDGKSRIYKVTKSAGSEKPHMVEFNSFGSSATCSCQMFEHLGIVCRHILTVFGTQGVSSLPSQYIVKRWTKYAMERSPDKKIDEVSKVNEPKEEQKSGAEDGEQSQTWRYNSLCREALRYAEEGASSVEVYIVAMQALQEAANKVNMAKRGIGQVAPNAPLAVMPIAAQLPAEGFRNVPEISFNQRKKRKRNSNNKTTENSSNQLMYLQQPVNFLFVAPGTSSGPQGPSQIVAAVPVSSSAPHGQTSSANHPSDGNTTSCSVAAQKNSDLSNYSGSAPSLGNVVPEGEIKSSGFASQIKESHELSQGNGNKGNNVNMASSTSSPQLVTVPVGLCLPSMDSSKISADAINSTNSGSMISNGNVSFGLCQSQSTNADPRSTPEGSSIRAAAIAAGARIASPSDAASIIKAAQSKGAIHIRPGEGVPNYLKPLAPQPLSSLPPGSIPNSVHPSSSHAQPGQCSFGDSAAAKDAIFGSTDSSDDDEYDEDDDTDDNDEDEGITGDEVEQE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.591290 | 5.858015 | 3.907576 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0655600 | RBH | 3.397708 | 3.191631 | 2.226833 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g45300 | RBH | 2.046947 | 2.110202 | 0.563500 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0655600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028570 | RBH | 1.535698 | 15.139445 | 5.946884 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028370 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0028450 | RBH | 0.637942 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0028110 | RBH | 13.447306 | 24.148018 | 25.384413 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0444100 | RBH | 6.0248155 | 27.4659245 | 5.853337 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027820 | RBH | 0.250871 | 1.637649 | 1.510116 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0444900 | RBH | 6.2791665 | 26.745532 | 8.213082 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028190 | RBH | 0.487824 | 0.166074 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0028250 | RBH | 0.849409 | 18.982332 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0028250 | RBH | 9.822657 | 27.824648 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0028030 | RBH | 0.812701 | 2.598344 | 2.006791 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0027990 | RBH | 0.425934 | 10.346516 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027950 | RBH | 1.357830 | 4.785180 | 2.571185 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027970 | RBH | 0.0 | 0.0 | 0.0 |
