Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g36439 | OGI:07045590 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:20188446-20190628 | ||||||||
| Gene Symbol | OsFbox153 | ||||||||||
| DNA seq | TCAGGAAGGTTGTGAAGGTCCAGCCAGCCAGTCCATGACTCTGTGCTCCATCACGCACTTACAAGGCTCTTGAGGATTAATGCAATGTTCACCACAATTCGAACAGTCCGTGAACTCCCCAAGCTCAAATTTTGAGTTCCAGATGAAGATGTTCAGCCGAGAAGCTTTTTGGAGCACAGCACTTGATATTGCCGAAGTCTCATAACCAGATATGTCCAAGTACTCAAGCTCCTCTAGGCAATCAAGGAATTTTATTATTGCAGCACAAGACATATCAGAGTTTGGTATCTCAAGCTTCTTCAGACGTGGAAGGGAGTTGCAAATGATTGAAGCCATCTCTTCGTCGACATAAAGAGCAAACACCTTCAACTCCAGAAAATCTGGACAACACTGATGTACATGGCTGAGAACATCGTGATTAATAAGACCCTCATCCACTGCCATGCCTTTAAGAAATTGTAATTTGTCAATTGCCTTACGGAACTGATCATAAGTTATACATGTGGCAGGAAGGCTGAAATAGTGCAGATTTGGATTCCTGCAGAAAAATAACATGAAATACACTTAGTCCATGGTTAACCATAACAATATTTCCATAAATATCTGGAAAATAACTGTTAGCCAATTTGGCCAAAAGTATCCAGACGAAACAAATAGCGCACTGCCACAAATAATTACATACAAATGATACCTAACACAAAATGCCATAAGAGTATTATGAGGAACAGAACACACTGCAAAACCACATGTAATTGAATCTCAATTCAATGTTGGATAGTTTTGGCCTTAAGCCTCATCAAAAATACCATTTATCACATAATTCACAACGTTCTGACAAAAAATATTTGACAAGCATTACTGAATCAGAAATAGCTAGTGAAAAGATGGAAAATTTGACTAATATCGCAATAAAAGGAGTGAGATTTGCTTGGGTCCCAAAAAGGCACGTTCACGTGATAGATTGTTTCTCCAACACTATGAAAGAAAAATTAGGGGCGGTTACCAGCCAGAGGATATAAATTCAAATTTGAAACCGGAACTTTAAATTTGGAAATGTATCAGCCGGTTACCAGTCAAAATTCAATTCTTTTATTAAATTTCTACCCAGTAGCTGGCATAGTTATTGAGACTGGACCGGCAATCTAACCGGCGAAGCCTTTGGTTCAACGGTTCATTGGTCTGACCAATTGAACCCCTGGTCTAAAGCAGTTCAATAATGTTTATATAAACTACTGATTCCATTCAAACATAAGGGCAAGCTTAGCCTGGTGGGAAGGTGCGTGGCTTCCTTGCATGTGCTCCTAGGTTCAATTCCCACCAAAATCCTTTTTTGTCAATTTTCTCCACTCATGTCGCTCATGCATGCACGCGCCCCGCCATAGTTAGCATCAATCGGCGGATCAAGGACTGGTTTTCTAGCTGGTTTTAACGAAAAACCGGACGGTCCATCCAATTTCTGCCGAGTCAATTGCACAGCGATCTTTCATCCGGACCAGACCGGTGGAGGCTCTGGTTTCGGTTTTTTCCGGTCCAACCGCCGGTCCGGTCCGGTCCGGTCTCAATAACTATGGTAGCTTGCAGTCTCCGCAGACCGCAGGTCACCAGATTTCACTGGGAACTGGATCATCTGACATCCAAGAGGCATCTTAGGGTGAAATGTTGCCTACATATATCTACTGTCTAAATTAATCCAATGCCCGGGGTTCATTCACAAAACTTTTTCTTAAAGAAATCATTACTTTTTTCTTAAAGAAATCATTTTGGAGGGAAAATAATAGAGTAATCATTTATGGCACTAAATTGGAAATGTATGAGATGACTTCTCCTAGTTCTTTGTTTGAGCAGATCCGTAGAACACGAGAAAAAAAGAACTACAGGGGGCAGAGAGTATTCGCGCTAACTGCTAACATGCAAAGAGCACAATGCTCCGACATCATTCTAATGGAAATTCAGAGCAAAAAGTTTAGGAAGCTGCTGAATCGGGAAGAGTTGAGACAGGTTGGTTGATTGACCAACCTCTTTCATCGAAGCCACTGCCATCAGAGGAGTCGGGATCATGAGTCCAGATGGTCAGTGGCTCAGTGCAACAGCATGAGGCCTGAGCAATGGCATGCACTGTTCACCAGAGCACTGATGGTGTAACCAGACGGCACATCAGAGTGCACACGCAAGGGAAATGGCAT
More
|
||||||||||
| CDS seq | ATGCCATTTCCCTTGCGTGTGCACTCTGATGTGCCGTCTGGTTACACCATCAGTGCTCTGACCAGGGGTTCAATTGGTCAGACCAATGAACCGTTGAACCAAAGGCTTCGCCGGAATCCAAATCTGCACTATTTCAGCCTTCCTGCCACATGTATAACTTATGATCAGTTCCGTAAGGCAATTGACAAATTACAATTTCTTAAAGGCATGGCAGTGGATGAGGGTCTTATTAATCACGATGTTCTCAGCCATGTACATCAGTGTTGTCCAGATTTTCTGGAGTTGAAGGTGTTTGCTCTTTATGTCGACGAAGAGATGGCTTCAATCATTTGCAACTCCCTTCCACGTCTGAAGAAGCTTGAGATACCAAACTCTGATATGTCTTGTGCTGCAATAATAAAATTCCTTGATTGCCTAGAGGAGCTTGAGTACTTGGACATATCTGGTTATGAGACTTCGGCAATATCAAGTGCTGTGCTCCAAAAAGCTTCTCGGCTGAACATCTTCATCTGGAACTCAAAATTTGAGCTTGGGGAGTTCACGGACTGTTCGAATTGTGGTGAACATTGCATTAATCCTCAAGAGCCTTGTAAGTGCGTGATGGAGCACAGAGTCATGGACTGGCTGGCTGGACCTTCACAACCTTCCTGA
More
|
||||||||||
| Protein seq | MPFPLRVHSDVPSGYTISALTRGSIGQTNEPLNQRLRRNPNLHYFSLPATCITYDQFRKAIDKLQFLKGMAVDEGLINHDVLSHVHQCCPDFLELKVFALYVDEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEELEYLDISGYETSAISSAVLQKASRLNIFIWNSKFELGEFTDCSNCGEHCINPQEPCKCVMEHRVMDWLAGPSQPS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g36439 | LOC_Os03g36439.1 | Chr03 | 20188446 | 20190628 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCATTTCCCTTGCGTGTGCACTCTGATGTGCCGTCTGGTTACACCATCAGTGCTCTGACCAGGGGTTCAATTGGTCAGACCAATGAACCGTTGAACCAAAGGCTTCGCCGGAATCCAAATCTGCACTATTTCAGCCTTCCTGCCACATGTATAACTTATGATCAGTTCCGTAAGGCAATTGACAAATTACAATTTCTTAAAGGCATGGCAGTGGATGAGGGTCTTATTAATCACGATGTTCTCAGCCATGTACATCAGTGTTGTCCAGATTTTCTGGAGTTGAAGGTGTTTGCTCTTTATGTCGACGAAGAGATGGCTTCAATCATTTGCAACTCCCTTCCACGTCTGAAGAAGCTTGAGATACCAAACTCTGATATGTCTTGTGCTGCAATAATAAAATTCCTTGATTGCCTAGAGGAGCTTGAGTACTTGGACATATCTGGTTATGAGACTTCGGCAATATCAAGTGCTGTGCTCCAAAAAGCTTCTCGGCTGAACATCTTCATCTGGAACTCAAAATTTGAGCTTGGGGAGTTCACGGACTGTTCGAATTGTGGTGAACATTGCATTAATCCTCAAGAGCCTTGTAAGTGCGTGATGGAGCACAGAGTCATGGACTGGCTGGCTGGACCTTCACAACCTTCCTGA
More
|
|||||||
| Protein seq | MPFPLRVHSDVPSGYTISALTRGSIGQTNEPLNQRLRRNPNLHYFSLPATCITYDQFRKAIDKLQFLKGMAVDEGLINHDVLSHVHQCCPDFLELKVFALYVDEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEELEYLDISGYETSAISSAVLQKASRLNIFIWNSKFELGEFTDCSNCGEHCINPQEPCKCVMEHRVMDWLAGPSQPS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.658014 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0562200 | RBH | 0.0 | 0.0 | 2.955633 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0562200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023470 | RBH | 0.314529 | 10.257270 | 4.069667 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023320 | RBH | 0.0 | 3.590450 | 1.533440 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0023350 | RBH | 1.334445 | 6.458766 | 3.015200 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0023390 | RBH | 0.030858 | 0.344403 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0023180 | RBH | 3.405984 | 15.509124 | 6.522937 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0343800 | SBH | 2.9201755 | 12.5689125 | 9.893421 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022950 | RBH | 0.080229 | 0.465499 | 0.613159 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0345000 | SBH | 3.9925955 | 15.2179035 | 13.5500385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0023220 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0023270 | RBH | 0.0 | 5.001719 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0023320 | RBH | 3.842805 | 8.595008 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0023160 | RBH | 0.601746 | 0.625311 | 0.381773 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0023020 | RBH | 0.0 | 12.545087 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G023040 | RBH | 0.096239 | 5.132584 | 0.931870 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0023000 | RBH | 0.320156 | 18.531799 | 5.989689 |
