Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os03g22050		OGI:03033590 \| 15/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr03:12630705-12635182		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		CIPK10, OsCIPK10, OsSnRK3.12, SnRK3.12
DNA seq		CAAGCCCGAAAACGTCGAGTTCAGTCTCGTTAATGAAAGGTTTCAAGTGGTTAAGTTTCTCGACGAAAAATGACCATTCAGTTAAGATAAACCATACACACTCTAACCAGCTACTCTCATTTGCTTTTGCCTGCACACAATATCTTTGGGTACAAACCGGAGAAGCAAAGGTTATACTATGAGGCATACATCAGGAAGCAAGTTGCTCCAGCCAACCGAAATTGCAACCATCTTTTTAGCCATGGACAACAGGGCGAGCTCAACAAAAATCTTTCCAGCCAGCAACCGAGGATTTTCCGATTGCTGTAGCTCACCTGACCTGGGCCAGTGCAGCACCCATCAACACATGCCTCTTCTTGGCTTTTGCTGCAACTTTTGAGCACCAACAAATGTATTGTCAATTAGCTAAGCAGCAACCACCACCATCAAAAGCTTGATATTTTCAGCTGACTTGCATATCATTAAATCCCCCAAATCATTCTGCCCCCGCCACTAATCAAGGTGGCGAGTGGCTGTAACACACAGATGGATCCGGGATTCGAAGGAATTAGTAGCTTGTAATTTCAGCAAGCTGTAAAATTCTAGATACTTCTAGAGTGTTCCTCGTCGCTAGCAGAATGAAATGCTGAAACAAATGGTGTACCGTAATACTCCCTCCGTCCCAAAATAAGTACAGTTTTGCACTATTCACGTTCAACGTTTGACCGTTCGTCTTATTTATTTTTTTTTATAATTAGTATTTTTATTGCTATTAGATGATAAAACATGAATAGTACTTTATGTGTGACTAAATATTTTCAAATTTTTCACAAATTTTTTAAATAAGACGGACGGTCAAACGTTGAGCACAAATATCTACGACTGCACTTATTTTAGGACGGAGGTAGTACATCAGACTGCTTGAATCGCCCATTGTTTGGCATTCAGTATTTGTTTGGCATTTCGATGAAGCTTCAACCTTGCATATGAATCAATCACATTTCAATAGTCATTCCTTGCCTATGGGTCTAGCCTTGCATCAGTTTAGCTCAGTGAAATCAATAGTTAAATGCAGCATCAGTTTGTAAGATTGGAACAAACGGCTGGCCACAACATCGATTGAAAGAGGGGGAACAAAATGAAACATACAAATCATTGGTTATGTTGGTGATTGTCCAATCTGACAACTAGATTTTGTGTATAGCGTAGTGTAGTATTATATTATATCACCTATTTCGGGATAAATATATTTGCAGCATGAATTATGCTTGCCAGCTTGAATTTAAAAGCAACCATAGCAAAATGTGGATTATCAATAATTTAGCACCATTCTAATTATTTCAGCACCAAGGTTAATAACTTGTCCCATACATATATTATTTGGAATATAGACATACTGTCTAGGTTTATTCTAATGTAAGTAATGGAAAAGAAATATCCCAAGGAAAAAAAACCATAGGTCATCTTTAGCCATCCAAAGGAGATTTATAAAAATTTCCTCAAAATATGATTACTGAACGGACTATGATATTTGTCAGTGTCATTACAGCTATAGCTAATATTGTAGCAAAGAGATTAGACTCAAACAAAAAGAATACAATTTGTACTGATACAAAAGTTCACCTATGATTTCTATATAACCCAAACTCTAAATACTCAAGCTTTTATTTTAGTGACTTCCATACTTATTTTAGAACACATGGCAAAGTGAATAAAACATGTTTTCAATTAAATGGTCAATACAATTATCGTTTCATACTGAACACATGATAATGAAAAATCAAATGACAAACTTTTTTAGAAAAGTACATTATTGATTACTAATAGCACATACAACACATCAACACATTGCCACAATCTCTACTGTCATTTCACTTGTCAAAATATTTAACATTAAGACTGTTCGTTCAATGATTGTGGTTGTGGCTGCTCACCTTGCCAAGCCCATACAATATCCTTTAGTGCTGGTCTCATCTCTTGTTTGACCTTTTGATACTCAAGTGTATCACCATTTATCTTCGTAAATTCCACTAAATGAAAATCTGGTGTGATCTGAAATATTTCAGCATTGATGGACATTACACCTTTCCTTCCAGGTTTTGATCCTTCCATCTTTAACAAACCACCATTTTTCTTCAAGAATTTTAATCGTAAATTCTTCGCAACATCCTCAAGCTTTTTGGTGATTGTCGTAGCTGTGTTAGTGGATGTAAATTTTGATTCCTCTTTGCTGTTTTCATCTTCAAACATAGCAGAAAGATCAAATCCTGATGAAAGAGAAATAATATCAAAAGCATTCAAGCTAGTAAGATTTTCTGCTTCTTGTTTTCCTTCATTTATATTGTTGCTTAAATTACCAAATGTTGAATCCATGTCAACATGCACAACTTTATCAACTTTATCTGTTGGTATGGTCTTGTTAAGTAGATCTGAATTAAGACCTACTCTAAACCAAGGATCTTCCATAATTTCTGAAACTGAGATCCGTGTCGCAGGGTTTGGATCAAGAATACGTCGCAAAAGCTTTCGGATATCAGAAGAAAACCAACTTGGCCATTTGAATTCCGCTTTGCATATCTTCTTATACATGTTTATCACATTTTTATCTTGAAATGGGAGATAACCAGCCAATAGTACATAAAGAATCACTCCACAAGCCCATACGTCAGCCTTTGCACCATCATATCCTTTTCTGTTAATCACTTCTGGAGCAACATATGCAGGAGTTCCACAAGTTGTGTGGAGCAACCCATCTTGTCTCTTACATTCTGCAAGTGCACTCAAACCAAAGTCTGAGATTTTCAAATTTCGATTTTCATCAAGAAGAAGGTTTTCTGGCTTTAGATCACGATGATAAACCCCTCTGCTATGACAAAAGTCAATAGCACTAATTAACTGCTGAAAGTACTTCCGTGCAACTTCTTCCTTTAGTCTTCCACGTCGAACCTTGTTGAATAACTCTCCCCCTTTCACATACTCTAGGATAAAATATATCTTAGTTTTGGTAGCCATCACCTCATACAATTGAACAATGCACGGATGTCTTACTAGGTTCATCACTGAAATCTCTCTTCTTATTTGATCCATAAGCTCACATTTCAATATCTTTTCTTTGTCAATCACCTTGATTGCAACACTTTGTGAATTCTTAATATTACGGCCATGGTAAACTTTAGCGAAACTTCCTTGCCCAAGTAATTTTCCTATCTCATATCTCTTCATCAAAATATTCCCCTTTTGTTCTACCATCTTATCAAATGCCTTATGTATTCAGAAAGCACTAATCATGTAACTTAGTGATGATGATTGATGAGGGAGTATCAGATGAGAGAGGCAATAAATGAAAAATAATTTCAACCGTCCCCAACAAGATGGTAATCTAACATGATGGTTGAACTGCCACATCTAGCCCCATCGTGCAAATGCACAAGGAGCACTTGCTGTGCATAAACCCGTACTTCACTATCATCAAGAGCACACAAAGCATAAATATTTTGAGCTACCTTTCCAATTCCCACACAAGGTAGCTCTCTATCATAGAAGCACATCTTCCAGCATTCCTTTTGTTTTGTGCTTCTAGCAAAAAGCCTAATACTGCCAATAAAATGAAATAAATGGTAAGGTACACATTACTGAATAGTGAATTAATAGTACTGCATTATAACTAACAAAAGAAATCTTTCCATGTATGTTAATATTTTGTTGTTTTCACGAGAATGTAAAGAGCAAATCTGTTTCCTTCCAAAGCAAAAGGAAACATTTGGATAAATTCTTCCAGAGTCCCACATAGTATGATTCTCTTCGTCTGGTGCTAGCCAGATTCTACAAAAGTCACTATGTCTACATTCTACAAAAAAAAAATCAACGAAATTCTTCCTAAGAAAATTCTAAAAAGGAACAGTATAACAATCCTATAAATGAAATGAAAGGATATTAGCGCTAGGTCAGTTCAGAATCATGACGGGACCAACTAAACACCACTCACTCCGGCAGAAGATAGAAATCAACAAAGTCCTCAAATCATATGCCCAAGGACAAGCAAAATACATGTTTAATAACCCTCTAAAGAAAGGTTACTGACGAACCCATGCCACTAAACCTTTTAATAAGTCTAAGAAAGAACTGCTACTACAGAGTAACAGAGCACACCCGTGTAACCGTGTTCTACATCATGACCAAGGATTAGATTCCTAATTAACTGCTCACTAAACCACAGTTCTTCCTAGGGTAGTAAATCTTCCATCTTCATACGAGTAAAAAAGAAACAGATCAAAACGAAGAAGAACTCGGATGTGAGTGGCAGAATCGGTACCTGATCCCGGCTCTGATCCGGGAAGGTTAAAGAGATCGGAATTAACCCTGCCGATCGAGCAGTCCCCCCTAAAATCAAGCCCTCCAACTCAAAGAAGATGAAAAAGAAAAATATCCAGAGAAGAATGGGGGCAGCCGAGGAGTAGGAGTGAGACGGAGGAAACGAATCAGGAGCCACCAAAAACGAT More
CDS seq		ATGGTAGAACAAAAGGGGAATATTTTGATGAAGAGATATGAGATAGGAAAATTACTTGGGCAAGGAAGTTTCGCTAAAGTTTACCATGGCCGTAATATTAAGAATTCACAAAGTGTTGCAATCAAGGTGATTGACAAAGAAAAGATATTGAAATGTGAGCTTATGGATCAAATAAGAAGAGAGATTTCAGTGATGAACCTAGTAAGACATCCGTGCATTGTTCAATTGTATGAGGTGATGGCTACCAAAACTAAGATATATTTTATCCTAGAGTATGTGAAAGGGGGAGAGTTATTCAACAAGGTTCGACGTGGAAGACTAAAGGAAGAAGTTGCACGGAAGTACTTTCAGCAGTTAATTAGTGCTATTGACTTTTGTCATAGCAGAGGGGTTTATCATCGTGATCTAAAGCCAGAAAACCTTCTTCTTGATGAAAATCGAAATTTGAAAATCTCAGACTTTGGTTTGAGTGCACTTGCAGAATGTAAGAGACAAGATGGGTTGCTCCACACAACTTGTGGAACTCCTGCATATGTTGCTCCAGAAGTGATTAACAGAAAAGGATATGATGGTGCAAAGGCTGACGTATGGGCTTGTGGAGTGATTCTTTATGTACTATTGGCTGGTTATCTCCCATTTCAAGATAAAAATGTGATAAACATGTATAAGAAGATATGCAAAGCGGAATTCAAATGGCCAAGTTGGTTTTCTTCTGATATCCGAAAGCTTTTGCGACGTATTCTTGATCCAAACCCTGCGACACGGATCTCAGTTTCAGAAATTATGGAAGATCCTTGGTTTAGAGTAGGTCTTAATTCAGATCTACTTAACAAGACCATACCAACAGATAAAGTTGATAAAGTTGTGCATGTTGACATGGATTCAACATTTGGTAATTTAAGCAACAATATAAATGAAGGAAAACAAGAAGCAGAAAATCTTACTAGCTTGAATGCTTTTGATATTATTTCTCTTTCATCAGGATTTGATCTTTCTGCTATGTTTGAAGATGAAAACAGCAAAGAGGAATCAAAATTTACATCCACTAACACAGCTACGACAATCACCAAAAAGCTTGAGGATGTTGCGAAGAATTTACGATTAAAATTCTTGAAGAAAAATGGTGGTTTGTTAAAGATGGAAGGATCAAAACCTGGAAGGAAAGGTGTAATGTCCATCAATGCTGAAATATTTCAGATCACACCAGATTTTCATTTAGTGGAATTTACGAAGATAAATGGTGATACACTTGAGTATCAAAAGGTCAAACAAGAGATGAGACCAGCACTAAAGGATATTGTATGGGCTTGGCAAGGTGAGCAGCCACAACCACAATCATTGAACGAACAGTCTTAA More
Protein seq		MVEQKGNILMKRYEIGKLLGQGSFAKVYHGRNIKNSQSVAIKVIDKEKILKCELMDQIRREISVMNLVRHPCIVQLYEVMATKTKIYFILEYVKGGELFNKVRRGRLKEEVARKYFQQLISAIDFCHSRGVYHRDLKPENLLLDENRNLKISDFGLSALAECKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADVWACGVILYVLLAGYLPFQDKNVINMYKKICKAEFKWPSWFSSDIRKLLRRILDPNPATRISVSEIMEDPWFRVGLNSDLLNKTIPTDKVDKVVHVDMDSTFGNLSNNINEGKQEAENLTSLNAFDIISLSSGFDLSAMFEDENSKEESKFTSTNTATTITKKLEDVAKNLRLKFLKKNGGLLKMEGSKPGRKGVMSINAEIFQITPDFHLVEFTKINGDTLEYQKVKQEMRPALKDIVWAWQGEQPQPQSLNEQS
Function		CBL-interacting protein kinase 10 [UniProtKB/Swiss-Prot:Q10LQ2]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os03g22050	LOC_Os03g22050.1	Chr03	12630705	12635182	-	MSU_osa1r7
CDS seq	ATGGTAGAACAAAAGGGGAATATTTTGATGAAGAGATATGAGATAGGAAAATTACTTGGGCAAGGAAGTTTCGCTAAAGTTTACCATGGCCGTAATATTAAGAATTCACAAAGTGTTGCAATCAAGGTGATTGACAAAGAAAAGATATTGAAATGTGAGCTTATGGATCAAATAAGAAGAGAGATTTCAGTGATGAACCTAGTAAGACATCCGTGCATTGTTCAATTGTATGAGGTGATGGCTACCAAAACTAAGATATATTTTATCCTAGAGTATGTGAAAGGGGGAGAGTTATTCAACAAGGTTCGACGTGGAAGACTAAAGGAAGAAGTTGCACGGAAGTACTTTCAGCAGTTAATTAGTGCTATTGACTTTTGTCATAGCAGAGGGGTTTATCATCGTGATCTAAAGCCAGAAAACCTTCTTCTTGATGAAAATCGAAATTTGAAAATCTCAGACTTTGGTTTGAGTGCACTTGCAGAATGTAAGAGACAAGATGGGTTGCTCCACACAACTTGTGGAACTCCTGCATATGTTGCTCCAGAAGTGATTAACAGAAAAGGATATGATGGTGCAAAGGCTGACGTATGGGCTTGTGGAGTGATTCTTTATGTACTATTGGCTGGTTATCTCCCATTTCAAGATAAAAATGTGATAAACATGTATAAGAAGATATGCAAAGCGGAATTCAAATGGCCAAGTTGGTTTTCTTCTGATATCCGAAAGCTTTTGCGACGTATTCTTGATCCAAACCCTGCGACACGGATCTCAGTTTCAGAAATTATGGAAGATCCTTGGTTTAGAGTAGGTCTTAATTCAGATCTACTTAACAAGACCATACCAACAGATAAAGTTGATAAAGTTGTGCATGTTGACATGGATTCAACATTTGGTAATTTAAGCAACAATATAAATGAAGGAAAACAAGAAGCAGAAAATCTTACTAGCTTGAATGCTTTTGATATTATTTCTCTTTCATCAGGATTTGATCTTTCTGCTATGTTTGAAGATGAAAACAGCAAAGAGGAATCAAAATTTACATCCACTAACACAGCTACGACAATCACCAAAAAGCTTGAGGATGTTGCGAAGAATTTACGATTAAAATTCTTGAAGAAAAATGGTGGTTTGTTAAAGATGGAAGGATCAAAACCTGGAAGGAAAGGTGTAATGTCCATCAATGCTGAAATATTTCAGATCACACCAGATTTTCATTTAGTGGAATTTACGAAGATAAATGGTGATACACTTGAGTATCAAAAGGTCAAACAAGAGATGAGACCAGCACTAAAGGATATTGTATGGGCTTGGCAAGGTGAGCAGCCACAACCACAATCATTGAACGAACAGTCTTAA More
Protein seq	MVEQKGNILMKRYEIGKLLGQGSFAKVYHGRNIKNSQSVAIKVIDKEKILKCELMDQIRREISVMNLVRHPCIVQLYEVMATKTKIYFILEYVKGGELFNKVRRGRLKEEVARKYFQQLISAIDFCHSRGVYHRDLKPENLLLDENRNLKISDFGLSALAECKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADVWACGVILYVLLAGYLPFQDKNVINMYKKICKAEFKWPSWFSSDIRKLLRRILDPNPATRISVSEIMEDPWFRVGLNSDLLNKTIPTDKVDKVVHVDMDSTFGNLSNNINEGKQEAENLTSLNAFDIISLSSGFDLSAMFEDENSKEESKFTSTNTATTITKKLEDVAKNLRLKFLKKNGGLLKMEGSKPGRKGVMSINAEIFQITPDFHLVEFTKINGDTLEYQKVKQEMRPALKDIVWAWQGEQPQPQSLNEQS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os03g22050	LOC_Os03g22050.2	Chr03	12630705	12635182	-	MSU_osa1r7
CDS seq	ATGGTAGAACAAAAGGGGAATATTTTGATGAAGAGATATGAGATAGGAAAATTACTTGGGCAAGGAAGTTTCGCTAAAGTTTACCATGGCCGTAATATTAAGAATTCACAAAGTGTTGCAATCAAGGTGATTGACAAAGAAAAGATATTGAAATGTGAGCTTATGGATCAAATAAGAAGAGAGATTTCAGTGATGAACCTAGTAAGACATCCGTGCATTGTTCAATTGTATGAGGTGATGGCTACCAAAACTAAGATATATTTTATCCTAGAGTATGTGAAAGGGGGAGAGTTATTCAACAAGGTTCGACGTGGAAGACTAAAGGAAGAAGTTGCACGGAAGTACTTTCAGCAGTTAATTAGTGCTATTGACTTTTGTCATAGCAGAGGGGTTTATCATCGTGATCTAAAGCCAGAAAACCTTCTTCTTGATGAAAATCGAAATTTGAAAATCTCAGACTTTGGTTTGAGTGCACTTGCAGAATGTAAGAGACAAGATGGGTTGCTCCACACAACTTGTGGAACTCCTGCATATGTTGCTCCAGAAGTGATTAACAGAAAAGGATATGATGGTGCAAAGGCTGACGTATGGGCTTGTGGAGTGATTCTTTATGTACTATTGGCTGGTTATCTCCCATTTCAAGATAAAAATGTGATAAACATGTATAAGAAGATATGCAAAGCGGAATTCAAATGGCCAAGTTGGTTTTCTTCTGATATCCGAAAGCTTTTGCGACGTATTCTTGATCCAAACCCTGCGACACGGATCTCAGTTTCAGAAATTATGGAAGATCCTTGGTTTAGAGTAGGTCTTAATTCAGATCTACTTAACAAGACCATACCAACAGATAAAGTTGATAAAGTTGTGCATGTTGACATGGATTCAACATTTGGTAATTTAAGCAACAATATAAATGAAGGAAAACAAGAAGCAGAAAATCTTACTAGCTTGAATGCTTTTGATATTATTTCTCTTTCATCAGGATTTGATCTTTCTGCTATGTTTGAAGATGAAAACAGCAAAGAGGAATCAAAATTTACATCCACTAACACAGCTACGACAATCACCAAAAAGCTTGAGGATGTTGCGAAGAATTTACGATTAAAATTCTTGAAGAAAAATGGTGGTTTGTTAAAGATGGAAGGATCAAAACCTGGAAGGAAAGGTGTAATGTCCATCAATGCTGAAATATTTCAGATCACACCAGATTTTCATTTAGTGGAATTTACGAAGATAAATGGTGATACACTTGAGTATCAAAAGGTCAAACAAGAGATGAGACCAGCACTAAAGGATATTGTATGGGCTTGGCAAGGTGAGCAGCCACAACCACAATCATTGAACGAACAGTCTTAA More
Protein seq	MVEQKGNILMKRYEIGKLLGQGSFAKVYHGRNIKNSQSVAIKVIDKEKILKCELMDQIRREISVMNLVRHPCIVQLYEVMATKTKIYFILEYVKGGELFNKVRRGRLKEEVARKYFQQLISAIDFCHSRGVYHRDLKPENLLLDENRNLKISDFGLSALAECKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADVWACGVILYVLLAGYLPFQDKNVINMYKKICKAEFKWPSWFSSDIRKLLRRILDPNPATRISVSEIMEDPWFRVGLNSDLLNKTIPTDKVDKVVHVDMDSTFGNLSNNINEGKQEAENLTSLNAFDIISLSSGFDLSAMFEDENSKEESKFTSTNTATTITKKLEDVAKNLRLKFLKKNGGLLKMEGSKPGRKGVMSINAEIFQITPDFHLVEFTKINGDTLEYQKVKQEMRPALKDIVWAWQGEQPQPQSLNEQS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os03g22050	LOC_Os03g22050.3	Chr03	12630705	12634427	-	MSU_osa1r7
CDS seq	ATGGTAGAACAAAAGGGGAATATTTTGATGAAGAGATATGAGATAGGAAAATTACTTGGGCAAGGAAGTTTCGCTAAAGTTTACCATGGCCGTAATATTAAGAATTCACAAAGTGTTGCAATCAAGGTGATTGACAAAGAAAAGATATTGAAATGTGAGCTTATGGATCAAATAAGAAGAGAGATTTCAGTGATGAACCTAGTAAGACATCCGTGCATTGTTCAATTGTATGAGGTGATGGCTACCAAAACTAAGATATATTTTATCCTAGAGTATGTGAAAGGGGGAGAGTTATTCAACAAGGTTCGACGTGGAAGACTAAAGGAAGAAGTTGCACGGAAGTACTTTCAGCAGTTAATTAGTGCTATTGACTTTTGTCATAGCAGAGGGGTTTATCATCGTGATCTAAAGCCAGAAAACCTTCTTCTTGATGAAAATCGAAATTTGAAAATCTCAGACTTTGGTTTGAGTGCACTTGCAGAATGTAAGAGACAAGATGGGTTGCTCCACACAACTTGTGGAACTCCTGCATATGTTGCTCCAGAAGTGATTAACAGAAAAGGATATGATGGTGCAAAGGCTGACGTATGGGCTTGTGGAGTGATTCTTTATGTACTATTGGCTGGTTATCTCCCATTTCAAGATAAAAATGTGATAAACATGTATAAGAAGATATGCAAAGCGGAATTCAAATGGCCAAGTTGGTTTTCTTCTGATATCCGAAAGCTTTTGCGACGTATTCTTGATCCAAACCCTGCGACACGGATCTCAGTTTCAGAAATTATGGAAGATCCTTGGTTTAGAGTAGGTCTTAATTCAGATCTACTTAACAAGACCATACCAACAGATAAAGTTGATAAAGTTGTGCATGTTGACATGGATTCAACATTTGGTAATTTAAGCAACAATATAAATGAAGGAAAACAAGAAGCAGAAAATCTTACTAGCTTGAATGCTTTTGATATTATTTCTCTTTCATCAGGATTTGATCTTTCTGCTATGTTTGAAGATGAAAACAGCAAAGAGGAATCAAAATTTACATCCACTAACACAGCTACGACAATCACCAAAAAGCTTGAGGATGTTGCGAAGAATTTACGATTAAAATTCTTGAAGAAAAATGGTGGTTTGTTAAAGATGGAAGGATCAAAACCTGGAAGGAAAGGTGTAATGTCCATCAATGCTGAAATATTTCAGATCACACCAGATTTTCATTTAGTGGAATTTACGAAGATAAATGGTGATACACTTGAGTATCAAAAGGTCAAACAAGAGATGAGACCAGCACTAAAGGATATTGTATGGGCTTGGCAAGGTGAGCAGCCACAACCACAATCATTGAACGAACAGTCTTAA More
Protein seq	MVEQKGNILMKRYEIGKLLGQGSFAKVYHGRNIKNSQSVAIKVIDKEKILKCELMDQIRREISVMNLVRHPCIVQLYEVMATKTKIYFILEYVKGGELFNKVRRGRLKEEVARKYFQQLISAIDFCHSRGVYHRDLKPENLLLDENRNLKISDFGLSALAECKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADVWACGVILYVLLAGYLPFQDKNVINMYKKICKAEFKWPSWFSSDIRKLLRRILDPNPATRISVSEIMEDPWFRVGLNSDLLNKTIPTDKVDKVVHVDMDSTFGNLSNNINEGKQEAENLTSLNAFDIISLSSGFDLSAMFEDENSKEESKFTSTNTATTITKKLEDVAKNLRLKFLKKNGGLLKMEGSKPGRKGVMSINAEIFQITPDFHLVEFTKINGDTLEYQKVKQEMRPALKDIVWAWQGEQPQPQSLNEQS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os03g22050	LOC_Os03g22050.4	Chr03	12630705	12634427	-	MSU_osa1r7
CDS seq	ATGGTAGAACAAAAGGGGAATATTTTGATGAAGAGATATGAGATAGGAAAATTACTTGGGCAAGGAAGTTTCGCTAAAGTTTACCATGGCCGTAATATTAAGAATTCACAAAGTGTTGCAATCAAGGTGATTGACAAAGAAAAGATATTGAAATGTGAGCTTATGGATCAAATAAGAAGAGAGATTTCAGTGATGAACCTAGTAAGACATCCGTGCATTGTTCAATTGTATGAGGTGATGGCTACCAAAACTAAGATATATTTTATCCTAGAGTATGTGAAAGGGGGAGAGTTATTCAACAAGGTTCGACGTGGAAGACTAAAGGAAGAAGTTGCACGGAAGTACTTTCAGCAGTTAATTAGTGCTATTGACTTTTGTCATAGCAGAGGGGTTTATCATCGTGATCTAAAGCCAGAAAACCTTCTTCTTGATGAAAATCGAAATTTGAAAATCTCAGACTTTGGTTTGAGTGCACTTGCAGAATGTAAGAGACAAGATGGGTTGCTCCACACAACTTGTGGAACTCCTGCATATGTTGCTCCAGAAGTGATTAACAGAAAAGGATATGATGGTGCAAAGGCTGACGTATGGGCTTGTGGAGTGATTCTTTATGTACTATTGGCTGGTTATCTCCCATTTCAAGATAAAAATGTGATAAACATGTATAAGAAGATATGCAAAGCGGAATTCAAATGGCCAAGTTGGTTTTCTTCTGATATCCGAAAGCTTTTGCGACGTATTCTTGATCCAAACCCTGCGACACGGATCTCAGTTTCAGAAATTATGGAAGATCCTTGGTTTAGAGTAGGTCTTAATTCAGATCTACTTAACAAGACCATACCAACAGATAAAGTTGATAAAGTTGTGCATGTTGACATGGATTCAACATTTGGTAATTTAAGCAACAATATAAATGAAGGAAAACAAGAAGCAGAAAATCTTACTAGCTTGAATGCTTTTGATATTATTTCTCTTTCATCAGGATTTGATCTTTCTGCTATGTTTGAAGATGAAAACAGCAAAGAGGAATCAAAATTTACATCCACTAACACAGCTACGACAATCACCAAAAAGCTTGAGGATGTTGCGAAGAATTTACGATTAAAATTCTTGAAGAAAAATGGTGGTTTGTTAAAGATGGAAGGATCAAAACCTGGAAGGAAAGGTGTAATGTCCATCAATGCTGAAATATTTCAGATCACACCAGATTTTCATTTAGTGGAATTTACGAAGATAAATGGTGATACACTTGAGTATCAAAAGGTCAAACAAGAGATGAGACCAGCACTAAAGGATATTGTATGGGCTTGGCAAGGTTGA More
Protein seq	MVEQKGNILMKRYEIGKLLGQGSFAKVYHGRNIKNSQSVAIKVIDKEKILKCELMDQIRREISVMNLVRHPCIVQLYEVMATKTKIYFILEYVKGGELFNKVRRGRLKEEVARKYFQQLISAIDFCHSRGVYHRDLKPENLLLDENRNLKISDFGLSALAECKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADVWACGVILYVLLAGYLPFQDKNVINMYKKICKAEFKWPSWFSSDIRKLLRRILDPNPATRISVSEIMEDPWFRVGLNSDLLNKTIPTDKVDKVVHVDMDSTFGNLSNNINEGKQEAENLTSLNAFDIISLSSGFDLSAMFEDENSKEESKFTSTNTATTITKKLEDVAKNLRLKFLKKNGGLLKMEGSKPGRKGVMSINAEIFQITPDFHLVEFTKINGDTLEYQKVKQEMRPALKDIVWAWQG More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	13.053969	10.707741	0.616559

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_03g0339900	RBH	19.059217	15.735124	2.354243
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g48100	RBH	5.188936	4.809706	13.150428
Nipponbare \| IRGSP 1.0 \| RAP-db	Os03g0339900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_03g0017140	RBH	13.228070	65.694160	7.846784
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_03g0016980	RBH	2.201808	4.567225	9.625064
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_03g0016990	RBH	21.433187	28.735880	25.949507
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_03g0016990	RBH	4.247132	1.038970	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_03g0016780	RBH	96.761818	35.020367	22.909048
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_03G0191200	SBH	22.5667955	2.2451185	22.3552645
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_03g0016640	RBH	10.382624	6.755188	1.004626
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_03G0213400	RBH	52.5826495	306.434433	5.4001535
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_03g0016860	RBH	4.395079	1.401193	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_03g0016900	RBH	9.324716	49.795002	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_03g0016940	RBH	82.049553	82.832596	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_03g0016820	RBH	30.271080	22.728872	1.641972
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_03g0016750	RBH	11.631639	54.884445	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_03G016700	RBH	18.531582	10.869464	4.352869
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_03g0016680	RBH	45.474098	442.196045	12.022613

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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