Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g21580 | OGI:03032760 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:12324379-12325683 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGCCTAGAGGACTCGGCCTCTGAAGGAAGGGCGCTGGCCTCACATAGCTGAATCCCACGAAGTTGCTATCTGCAGCGACAGGGCTGGCCACTGGAGAGTCGAGCACGGGCATGCTGGTCCAGCACTCGTCAAAATTGGCGATGCAGGTTTTGCCAGCAACATTTGGCGGAAACTTGGCTGAGGACCTGTTTGGGAAGCTTAAGATTCTGAGAAGCAGCTGCTGAGAATCTGGAGAAGCTGAGAAACCCAGCTTTTGGCTTCTAATTTATTTTTAAGATTATATAACTACAGATTCTCAGAATATGGGTAAAAAGCTGGACTGTTTGGGGGAGCTTTCTAGCAACTGGAGATTCTAGAAGAAGCTCCCCCAAACAGGCACCGAATCTGTCGGGAGTCTAGCTTCTTTCAGTTTACTGGGTCGGCTGTCCTTCAGGGAGATGTACTCCGCGCTCAACACCGTGTCGTGTGTCGGGACACTACATCAGCTTCGGCCCCACAACTCCCATCCCCAACAAGTGTTGCCAGGGGTGGAGCTAGTATATATTAGGGAGGTGCCTAGGAACCCAGTGAAGAAAATTTTTTAGCTATACCTCATCTATTTTCATCATGTATGCACCCCCTCAATACAAATTTAGACATCTGTATTAGCTTATACTCAATCTAAAGTAGAGTAAATTAAGCAAGTGGCACCATCCTCTGTTTCGCTATAGCTCCACCCCTACCGCCGCGCGCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCAGGTGAGGTGAGTGATGAGCCGAGCTGGACCTGCTCCGGCAACCGGCCACCGCCTCTTCCTTCTCGATCGTGAGACGCGCGCGCGTACGCGGCGCATTCGCCTCTTTTGTAACTACTACCACCGTCGCATCGCGATGGGAGCGTCGGCGTTTACTTGTCGAGTCGCGAATCGGTGGAGGCTTTGAAAATTATTACGAGTTTTAATGTGTATTTCCTGTATGATTTTTGGATCAGCTGACAATGGTGAGGGTTACACGGAACACGTAAGGTGCCATTCTTGTGTCTTGTTTATACGTTGTGAACCGGATCAGCTCCTCGTCGTCGTGGAGGCTCGACCATGGTCTGGTCTGTCTGTCCCGCCGGAGCGGAATCGCCCAGTGCGCTCCGGCCGGTGGCGCTGGCTGGCATGTTGCACGCCGGGGAAGGCATCGGGTGGGCAGAGCCGTCATGCATTGCGCCGTCGTAGAATGGTTAGCATGATGTGTCAGGCCGAACGGGACGCCGTTGGATCGCCAATTCGCCAT
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| CDS seq | ATGGCGAATTGGCGATCCAACGGCGTCCCGTTCGGCCTGACACATCATGCTAACCATTCTACGACGGCGCAATGCATGACGGCTCTGCCCACCCGATGCCTTCCCCGGCGTGCAACATGCCAGCCAGCGCCACCGGCCGGAGCGCACTGGGCGATTCCGCTCCGGCGGGACAGACAGACCAGACCATGGTCGAGCCTCCACGACGACGAGGAGCTGATCCGGTTCACAACAAGCCAAAAGCTGGGTTTCTCAGCTTCTCCAGATTCTCAGCAGCTGCTTCTCAGAATCTTAAGCTTCCCAAACAGGTCCTCAGCCAAGTTTCCGCCAAATGTTGCTGGCAAAACCTGCATCGCCAATTTTGACGAGTGCTGGACCAGCATGCCCGTGCTCGACTCTCCAGTGGCCAGCCCTGTCGCTGCAGATAGCAACTTCGTGGGATTCAGCTATGTGAGGCCAGCGCCCTTCCTTCAGAGGCCGAGTCCTCTAGGCTGA
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| Protein seq | MANWRSNGVPFGLTHHANHSTTAQCMTALPTRCLPRRATCQPAPPAGAHWAIPLRRDRQTRPWSSLHDDEELIRFTTSQKLGFSASPDSQQLLLRILSFPNRSSAKFPPNVAGKTCIANFDECWTSMPVLDSPVASPVAADSNFVGFSYVRPAPFLQRPSPLG |
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| Function | Serine/threonine-protein kinase AtPK2/AtPK19 [UniProtKB/Swiss-Prot:Q39030] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g21580 | LOC_Os03g21580.1 | Chr03 | 12324379 | 12325683 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGAATTGGCGATCCAACGGCGTCCCGTTCGGCCTGACACATCATGCTAACCATTCTACGACGGCGCAATGCATGACGGCTCTGCCCACCCGATGCCTTCCCCGGCGTGCAACATGCCAGCCAGCGCCACCGGCCGGAGCGCACTGGGCGATTCCGCTCCGGCGGGACAGACAGACCAGACCATGGTCGAGCCTCCACGACGACGAGGAGCTGATCCGGTTCACAACAAGCCAAAAGCTGGGTTTCTCAGCTTCTCCAGATTCTCAGCAGCTGCTTCTCAGAATCTTAAGCTTCCCAAACAGGTCCTCAGCCAAGTTTCCGCCAAATGTTGCTGGCAAAACCTGCATCGCCAATTTTGACGAGTGCTGGACCAGCATGCCCGTGCTCGACTCTCCAGTGGCCAGCCCTGTCGCTGCAGATAGCAACTTCGTGGGATTCAGCTATGTGAGGCCAGCGCCCTTCCTTCAGAGGCCGAGTCCTCTAGGCTGA
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| Protein seq | MANWRSNGVPFGLTHHANHSTTAQCMTALPTRCLPRRATCQPAPPAGAHWAIPLRRDRQTRPWSSLHDDEELIRFTTSQKLGFSASPDSQQLLLRILSFPNRSSAKFPPNVAGKTCIANFDECWTSMPVLDSPVASPVAADSNFVGFSYVRPAPFLQRPSPLG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0333500 | RBH | 0.0 | 0.0 | 1.291924 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48290 | SBH | 1.184005 | 0.485825 | 1.104302 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0333500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016700 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016560 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016560 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016330 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0203300 | SBH | 0.6757395 | 0.176968 | 0.008768 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016210 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0207900 | SBH | 10.8437855 | 16.8915355 | 44.5555765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016440 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016510 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016390 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016300 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016260 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016210 | RBH | 0.0 | 0.0 | 0.0 |
