Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g17084 | OGI:03025820 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:9492890-9497494 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGCCCAAGGCAGAGAAGAAGCCGGCGGAGAAGAAGCCCGCAGCCGGCGAGGAGAAGTCGGCGGAGAAGGCGCCGGCGGGGAAGAAGCCCAAGGCGGAGAAGCGGCTGCCGGCGTCGAAGGCGTCGTCCAAGGAGGGCGGCGCCGGCGACAAGAAGGGGAGGAAGAAGGCGAAGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTGCACCCGGACATCGGAATCTCCTCCAAGGCCATGTCGATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCGCAGGAGGCCGCCCGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCGGTCACCAAGTTCACCAGCAACTAGGCCTGTCTCTCTAGGGTTTCGATGCCATGCTTCTCTCCTTCCCTTTCCCCTCGTGTGCAGTGTGCTAGGTGGCAGTAGTTGCAAACTTGTGCCTGCTTTGTAAATTGTGCTTGATCATAATGGGCAGCTTGGATTTGAAGTAATAGACGTGTCGAGTGTTATTTATTGTCGGTGGCTGATTCGCATCTTGTGTTTTTCTTTTCTCTTTGCGATTGCGATTTGGGGATCTAGGGTTTGAGGAGATGATGCTGCGAGGTGGGCGGCTGGGTGGCTTGGCCTCTCGGATGGTTGGAGCCAAGCCTTTCAGCACGGAGATATTTGTGAGCAGTAAGTTCATCTCCATGTAATTAAATTTTCGCCGCCTACGTAATAATCTTGTGGTTTGCAAAATGTTTGGATCTGTGTGAGCCTGTGATGTGATGTCCTGCTGCTTCACAGGTCCGCTTGTGATGATCTGTGCGTCAGAACTTCATGAGTGAATGGGGTTTCTTGATCTGGTGTGATTCTGGGGGGTGTGGTGGATGAAATGAGCACTAAATGGTGTGTCCTTTAGCCCTTCTTTTTTTCTGAATATGATAGCTATGGCATGCCTTAAGTTGTTGAGGCTTGGTGCTTTCAGAATATGATTCCTTTTGATTGCAATGAAGGATCGATCAGAGGATGCTTTCTAGCGGGTTAGAGAATTACAGCCTAGATACATACTAGCTAGCTGTTGTTGTAGAGCTCATAGAGTTTGACAGATGCTGATTTATTCTCTTGGTGATAGAGTACTTAGAAGTCCCTAATCTGCTGAGCCTGTGAGATGCTCACCTGTTCACATGGACCATGAGTAGAACACATAAGTTGTCTGTAGATATTCTGCTATTTGTGCACGCTAAAGCCATGCAAGTTATGTTCTTAGTGGATTGTCCACTCGTTCTATCATGTTTTGATGTTGCTTGCTCATACAGCTTAAACATCCATTCACTCATTTTGGGATTTTGTAGGGCTATCATTTTACACAACAGAGGAAGAACTTAAAAATGTCTTCTCACCATTTGGCGCTGTTGAGGAAGGTACTAGTCAGTACTCAGTAGTCACATGCTTTTCAGCACAGGCAATTTAAATCTTTGTTGTTGCTCTTAATTGGCATTCAAGTTTCACTCTGCTTTATCTACCTTATCAAGCGTAGCTCGATTGGTAAGAGAACCAAACTGGAAGGCCAAAAGGATTTGGTTTTGTTAAATATTCTTCTCAAGCAGACGGAGAGAAAGCTGTTAAGGAAATGGATGGACGGGTATTTGCTCTGCTCATCCCCTATCTTGCCTATGACCCGCAATTTACCTTTCTGATGTTAGTTTTGATTCTTCTTTATCTGAGAAGAGTTCTGAAAATCTGTATATAGTACTTTCTACCTGGTTTTCAATTGGAATTGAAGGTACATGCACACCACACACACATTTCTAGCTTAATTACTTGAAGCCTAGAGTGGTTTATCGTGATTCATGATAACACTTACCCTCGTAGATTGAGTGGGCCTCATTTGTGATGTTATCTCTGATCTACTTCAGATACTAAGGGGATAAAAAAAATCCACTGATACAAACAACTAAATTAGATGAGGCACTTAACTGGACAACTAAATGAAAAGGACAAGTTGACTGCAGAACTGATCTCTCCGCTGATTAGACTCTTTACAAACAACTACATTAGCTGAGGCACTTACCTGGAGTACTAAATGAAAAGGACAATTTGCCTGCAAAACTGATGTACCTAATTTCAAGATATAATGTGTTGCATGTTTGTAATCTTTGGCATAACTGCATGGTGTGGAACAGAACTAATTTTTGTAGTTCTATGAGATCGAGACACTAAGCAGGGATTTATAGTATTTTACGTTCAACCCAGATTGAGAACTTGGCTAGTTTACTGTAAAAATCATGTGAAGCAAACTTTTTGCTGCCTTTTTCTGTAAAACCATGTGGACCAAACTGTGTGGTTTATTTCCTTCTGTGAGGAACATTGTGAACATTGTGTTGCTTATATAGTTCTTTTTATTCTGTTAATCCCAAAGAAAATATCTTCTAGATTGGCCATAAACTTTGAGATTAGATATCCATCTTGCTAGCATGTTGGCCCTCCACCATTTTTGTCACTGCAGAATGCTTTTATTTTGGGATTCATTCAGATCTTTCTTCATGTGGAAATGATTCGTATTCAGCATAGATTTATACTAAACCAGCCTTCTTTTTTCCCCTGATTAGTCTGTTTTATTGTAAGACTAAACTTTCAATAAATCTTTTCTTTGGCAGATCATTCGTGGAAGACTAATTTTTGTGGAAATTGCAAAAGAATAAAACTGCATAGGGCATAGTCTATCACCATCGTTGCTGAACTGGTGCAGTTTTCCTGCCTTAAACCGTACTCGTACATGGCTAATCTGGCTCAGTTCCAACAAGACCTATGAGCACTTCTCCTGTCCTGAATGCGTAATTTTGTGACTTTTGTTGAGCCCAGTATTGGTTTGCGAACAACATTGTTTGTTTTTTTTTTAAGACAAAAGAAAGCTTTCAAACAGGAAAATTGTTGTTGGAAGGTTAGGTTGAATTTATGAACCCGGGCTGGAAGGTTATATGTGCGTAGAATGCTGGATGACCCATATACCCGCCCCTGCTCCACTAGCTATTTCTTCCACCGTTTTCTTCTGTGTCATCTATAAAGCGATATTGTTTGAATTTGATCTCAAAAGTATTAAAGCCGTGATGTATATCCGATGAACTGGTTTTGGATGGCTTTGTACCCTACGTCAGAGTAATGTGATCATTGACATGTGGACCATGTGGACCTATGAACACATTACCTAAGAGCATCTCCAACTGTCTCTCCAAATTAAACTCTCTAAATACCCATATAGTCAGCTTTCAGTCGATTTAGCAAGCCAAACTTATTCCTCACTCCAATATTCTTTTCATCTACACTCTTCATTACAAGCCTATGACACTGGGACCCACACGTCAGCCTCTACTCCTCTCTCCCTCTTCCTCTTCTGTCGGCCCTCTTCCCGTGCAGGTGATTGGCGACGGCGGTGACGCGGTGATTGGCGATGGCGGCGGCGGCTTGCAACGGTTACCTCGACGACGGCCATGGAGCAGAGGTGGAGGCCGCGCGGCCCCCGAATCCACCCCGCCGGCCAAATACGCGCGGGGCCGGAGGCCGCGCAGAGGCAGTGGAGGTCACGCCCCCCACCCTGAATCCGGCGGCGGTGGAGGCGGCGGAGGCGGCGCTAGGGAGTGGCGCGACGTTGGGACGACGATGCGGGGAGGCGGCGGACGCGGACGCGGCAAATCGGCGCAGGCAGCGGACCGCTGTTGCCGACGCATGCCGATGGACGGCGGCCCCCCAACGCCGACGCTCGCCGAGGTGCTCTCCCTCTCCCCGCCAACTACTCCCCGTAGTCGAGCGCCGTCGAGCTCCAGACGGCGAAGGATGGCGGCCCAGACCTTGGCGACGACAGCAGCTGGCGGCCAGACGGCGGCGGAGGTCGCGCGGCCCCCTGATTCCACGCCGCCGGCCGAATCCGGCGAGGAAGGAGGCGTAGGAGTCCACACGGGGGAAGAAGGCAAAGCGGCTGCCGCCGGAGAGGGATCCGACCCCTTCTTCCCCATCATCGCTGCTCCCTCGTTGCCGTCGCCAACACAGCCTCCCTTGCTCCTGCCTCGTCATCGCGGAGCTCTCTTGGTGACGGAGGAAATCGGACGGCGACGACGGTGCAGGTGGGAGGCGGCGACAGCGCGGGACGGCGATGGCGCGGTACGACGATGGCGGCGGCGATTGATCTGTGCGGGGAGAGAGAGAGAGAGAGAGAGAGGAGAGATTTGGGGGGGGGGGAGCAACGTGGGGCCCATGGCTAGCAGCCAATTTGGCTAGGCAGGCGGGATGGCCAAATTTGGCGTAGCCAAGAGCCAATTTGGTGGCCAGTCGGATGGAGAGGCTGTTGGAGTGGTTTTTTTCTCAAAACTTGCTAGAATTTAACTTGAAGAGTGATTTGGCCATTCTATTGGAGATGCTCTAAGAGGTTATAGTTCTATGGGCATGGCTAAAGTTGGATTATCTCACTTTAGTTCAATTAAATTAATTAGAATGCACTGATTAACCTAGGATAGGTAA
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| CDS seq | ATGGCGCCCAAGGCAGAGAAGAAGCCGGCGGAGAAGAAGCCCGCAGCCGGCGAGGAGAAGTCGGCGGAGAAGGCGCCGGCGGGGAAGAAGCCCAAGGCGGAGAAGCGGCTGCCGGCGTCGAAGGCGTCGTCCAAGGAGGGCGGCGCCGGCGACAAGAAGGGGAGGAAGAAGGCGAAGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTGCACCCGGACATCGGAATCTCCTCCAAGGCCATGTCGATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCGCAGGAGGCCGCCCGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCGGGCTATCATTTTACACAACAGAGGAAGAACTTAAAAATGTCTTCTCACCATTTGGCGCTGTTGAGGAAGGTGATTGGCGACGGCGGTGACGCGGTGATTGGCGATGGCGGCGGCGGCTTGCAACGGTTACCTCGACGACGGCCATGGAGCAGAGGTGGAGGCCGCGCGGCCCCCGAATCCACCCCGCCGGCCAAATACGCGCGGGGCCGGAGGCCGCGCAGAGGCAGTGGAGGTCACGCCCCCCACCCTGAATCCGGCGGCGGTGGAGGCGGCGGAGGCGGCGCTAGGGAGTGGCGCGACGTTGGGACGACGATGCGGGGAGGCGGCGGACGCGGACGCGGCAAATCGGCGCAGGCAGCGGACCGCTGTTGCCGACGCATGCCGATGGACGGCGGCCCCCCAACGCCGACGCTCGCCGAGGTGCTCTCCCTCTCCCCGCCAACTACTCCCCGTAGTCGAGCGCCGTCGAGCTCCAGACGGCGAAGGATGGCGGCCCAGACCTTGGCGACGACAGCAGCTGGCGGCCAGACGGCGGCGGAGGTCGCGCGGCCCCCTGATTCCACGCCGCCGGCCGAATCCGGCGAGGAAGGAGGCGTAGGAGTCCACACGGGGGAAGAAGGCAAAGCGGCTGCCGCCGGAGAGGGATCCGACCCCTTCTTCCCCATCATCGCTGCTCCCTCGTTGCCGTCGCCAACACAGCCTCCCTTGCTCCTGCCTCGTCATCGCGGAGCTCTCTTGGTGACGGAGGAAATCGGACGGCGACGACGGTGCAGGTGGGAGGCGGCGACAGCGCGGGACGGCGATGGCGCGGATAGGTAA
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| Protein seq | MAPKAEKKPAEKKPAAGEEKSAEKAPAGKKPKAEKRLPASKASSKEGGAGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAGYHFTQQRKNLKMSSHHLALLRKVIGDGGDAVIGDGGGGLQRLPRRRPWSRGGGRAAPESTPPAKYARGRRPRRGSGGHAPHPESGGGGGGGGGAREWRDVGTTMRGGGGRGRGKSAQAADRCCRRMPMDGGPPTPTLAEVLSLSPPTTPRSRAPSSSRRRRMAAQTLATTAAGGQTAAEVARPPDSTPPAESGEEGGVGVHTGEEGKAAAAGEGSDPFFPIIAAPSLPSPTQPPLLLPRHRGALLVTEEIGRRRRCRWEAATARDGDGADR |
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| Function | Histone H2B.1 [UniProtKB/Swiss-Prot:A3AGM4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g17084 | LOC_Os03g17084.1 | Chr03 | 9492890 | 9497494 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCCCAAGGCAGAGAAGAAGCCGGCGGAGAAGAAGCCCGCAGCCGGCGAGGAGAAGTCGGCGGAGAAGGCGCCGGCGGGGAAGAAGCCCAAGGCGGAGAAGCGGCTGCCGGCGTCGAAGGCGTCGTCCAAGGAGGGCGGCGCCGGCGACAAGAAGGGGAGGAAGAAGGCGAAGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTGCACCCGGACATCGGAATCTCCTCCAAGGCCATGTCGATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCGCAGGAGGCCGCCCGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCGGGCTATCATTTTACACAACAGAGGAAGAACTTAAAAATGTCTTCTCACCATTTGGCGCTGTTGAGGAAGGTGATTGGCGACGGCGGTGACGCGGTGATTGGCGATGGCGGCGGCGGCTTGCAACGGTTACCTCGACGACGGCCATGGAGCAGAGGTGGAGGCCGCGCGGCCCCCGAATCCACCCCGCCGGCCAAATACGCGCGGGGCCGGAGGCCGCGCAGAGGCAGTGGAGGTCACGCCCCCCACCCTGAATCCGGCGGCGGTGGAGGCGGCGGAGGCGGCGCTAGGGAGTGGCGCGACGTTGGGACGACGATGCGGGGAGGCGGCGGACGCGGACGCGGCAAATCGGCGCAGGCAGCGGACCGCTGTTGCCGACGCATGCCGATGGACGGCGGCCCCCCAACGCCGACGCTCGCCGAGGTGCTCTCCCTCTCCCCGCCAACTACTCCCCGTAGTCGAGCGCCGTCGAGCTCCAGACGGCGAAGGATGGCGGCCCAGACCTTGGCGACGACAGCAGCTGGCGGCCAGACGGCGGCGGAGGTCGCGCGGCCCCCTGATTCCACGCCGCCGGCCGAATCCGGCGAGGAAGGAGGCGTAGGAGTCCACACGGGGGAAGAAGGCAAAGCGGCTGCCGCCGGAGAGGGATCCGACCCCTTCTTCCCCATCATCGCTGCTCCCTCGTTGCCGTCGCCAACACAGCCTCCCTTGCTCCTGCCTCGTCATCGCGGAGCTCTCTTGGTGACGGAGGAAATCGGACGGCGACGACGGTGCAGGTGGGAGGCGGCGACAGCGCGGGACGGCGATGGCGCGGATAGGTAA
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| Protein seq | MAPKAEKKPAEKKPAAGEEKSAEKAPAGKKPKAEKRLPASKASSKEGGAGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAGYHFTQQRKNLKMSSHHLALLRKVIGDGGDAVIGDGGGGLQRLPRRRPWSRGGGRAAPESTPPAKYARGRRPRRGSGGHAPHPESGGGGGGGGGAREWRDVGTTMRGGGGRGRGKSAQAADRCCRRMPMDGGPPTPTLAEVLSLSPPTTPRSRAPSSSRRRRMAAQTLATTAAGGQTAAEVARPPDSTPPAESGEEGGVGVHTGEEGKAAAAGEGSDPFFPIIAAPSLPSPTQPPLLLPRHRGALLVTEEIGRRRRCRWEAATARDGDGADR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.136397 | 2.900883 | 2.892265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0279000 | RBH | 12.793023 | 16.637175 | 39.413593 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g62230 | SBH | 6.931571 | 5.135040 | 7.675862 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0279000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0013040 | RBH | 4.920084 | 57.871109 | 30.599056 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0012850 | RBH | 1.390080 | 21.045309 | 7.152603 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0012870 | RBH | 7.871277 | 72.037315 | 6.780999 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0012840 | RBH | 1.428145 | 2.474049 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0012700 | RBH | 5.905756 | 98.048843 | 17.189838 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0161800 | RBH | 68.3992695 | 125.329834 | 265.868271 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0012600 | RBH | 1.320295 | 4.446241 | 2.869977 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0163300 | RBH | 89.3250695 | 171.414665 | 275.958618 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0012760 | RBH | 1.827597 | 1.429693 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0012780 | RBH | 1.232514 | 76.585228 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0012830 | RBH | 25.949389 | 30.108547 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012710 | RBH | 3.566353 | 9.813068 | 6.682848 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0012680 | RBH | 2.363573 | 59.560970 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G012630 | RBH | 1.535284 | 22.568893 | 15.969469 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0012500 | RBH | 4.108371 | 98.144073 | 6.816394 |
