Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g62230 | OGI:01107620 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:36013832-36014697 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAAAACATTCTATATTATTCTGTAATCTAAATCCCATAAATTCGGTATTATTCACTCTGATACATCACAAACTTTTTCCACTGATACAAATTACAAAATCCTCCGTAGGTAGCCTCTGCGGTCACTCATTTGACATTTCCTGCAGCCCGTTCAAAGCACAAACCACAAATTCACAGGAATTCAAGCACCAAGAGAAACACATTGAAAGTTGTGATAAGATCAGCGATTCATTTATAGCGAATTTCACCGATACTACATTGTTCCATGTGGGAAATCTAAGAGCGCTCTAAATAAACATCAGAACAGATAAACATCCAACGAACATGAACAGATCACGCGTCTTAAGACGACGTGAACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCGCGGGAGGTGATGGTCGGCTTCTTGTTGTAGCGGGCGAGACGGGCGGCCTCCTGGGCGAGCTTCTCGAAGATATCGTTGATGAACGAGTTCATGATCGACATGGCCTTGGACGATATCCCGATATCGGGATGCACCTGCTTGAGGACCTTGAAAATGTAGATCTTATAAGTTTCGACGCTCTTCTTGGCCTTCTTCTTCCCCTTCTTCTCGCCGCCGCCCTCCTTGGCGCCCGGCACCCGCTTCTCGGCCTTGGGCTTCTTCTCCGCCTTCTCCTCCACCGGCTTCTTCTCCGCGGGCTTCTTCTCCGCCTTGGGCGCCATCGGGAATTCGCTGGAGATGAACCGCGACGACGACGAGTAGAGGATTTGGGATTTGGAGGCGAGAGGTGGATTGGATTTGATTTGCTTTCGCCGTGTGGGGAATTA
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| CDS seq | ATGGCGCCCAAGGCGGAGAAGAAGCCCGCGGAGAAGAAGCCGGTGGAGGAGAAGGCGGAGAAGAAGCCCAAGGCCGAGAAGCGGGTGCCGGGCGCCAAGGAGGGCGGCGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTCGAAACTTATAAGATCTACATTTTCAAGGTCCTCAAGCAGGTGCATCCCGATATCGGGATATCGTCCAAGGCCATGTCGATCATGAACTCGTTCATCAACGATATCTTCGAGAAGCTCGCCCAGGAGGCCGCCCGTCTCGCCCGCTACAACAAGAAGCCGACCATCACCTCCCGCGAGATCCAGACCTCGGTGCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCCGTCACCAAGTTCACGTCGTCTTAA
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| Protein seq | MAPKAEKKPAEKKPVEEKAEKKPKAEKRVPGAKEGGGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS |
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| Function | Histone H2B.11 [UniProtKB/Swiss-Prot:Q943L2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g62230 | LOC_Os01g62230.1 | Chr01 | 36013832 | 36014697 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGCCCAAGGCGGAGAAGAAGCCCGCGGAGAAGAAGCCGGTGGAGGAGAAGGCGGAGAAGAAGCCCAAGGCCGAGAAGCGGGTGCCGGGCGCCAAGGAGGGCGGCGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTCGAAACTTATAAGATCTACATTTTCAAGGTCCTCAAGCAGGTGCATCCCGATATCGGGATATCGTCCAAGGCCATGTCGATCATGAACTCGTTCATCAACGATATCTTCGAGAAGCTCGCCCAGGAGGCCGCCCGTCTCGCCCGCTACAACAAGAAGCCGACCATCACCTCCCGCGAGATCCAGACCTCGGTGCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCCGTCACCAAGTTCACGTCGTCTTAA
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| Protein seq | MAPKAEKKPAEKKPVEEKAEKKPKAEKRVPGAKEGGGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.931571 | 5.135040 | 7.675862 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0839500 | RBH | 13.149774 | 9.482508 | 38.220432 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g38560 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0839500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0039700 | RBH | 4.579397 | 106.118561 | 16.127705 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039170 | RBH | 1.471524 | 18.024191 | 11.058099 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0039590 | RBH | 7.326114 | 106.923515 | 29.130568 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039050 | RBH | 1.181786 | 4.636629 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0038630 | RBH | 24.889154 | 127.822533 | 39.658352 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0595700 | RBH | 87.953022 | 39.976158 | 41.4769 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038310 | RBH | 1.333694 | 12.149468 | 5.316556 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0592800 | RBH | 91.932926 | 25.263444 | 156.9019775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0038650 | RBH | 1.047573 | 3.502902 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0038610 | RBH | 3.008010 | 101.977242 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0038830 | RBH | 30.626787 | 110.704834 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0038850 | RBH | 4.046440 | 12.466216 | 7.729274 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0038670 | RBH | 1.839100 | 77.394081 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039180 | RBH | 1.821160 | 63.721794 | 8.410433 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0038870 | RBH | 10.504045 | 107.015823 | 34.220222 |
