Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g13880 | OGI:03005430 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:7527674-7529809 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACGAATCGAACATTCCATCGTTCATGTTAGGTGATTTCGACCCTAACTACGTGTCGAGGTCATTCCCAACTGGTGAGTATGATGCCACCGGATCGGCTCCAACACCACCAGTTATGGAGCCACCGGCGGGTTCAGAAGCATCCGGCACTATGAGTGGGAGTGCATCGACGAACACCGGCTCAAAGAGATCAAGAACTTCCGGTGTTTGGCAACATTTCGATGAGGTGGCCATGACAGGCCCTGATGGAAGGCAGGTAACATTCGCGAGATGTAGAATATGCAAAAATAAGTTATCTGCAAAATCATCTGGTGGAACAGGACATTTGAAGCGGCATGCCGAGGCTTGTGCAAAGAAGCAAGGAATCCAACTACGACAGCAACAACTACTACTAAATCCTGATGGTACGGTACGTACGTGGGAGTATGATCCTATGGTAGCTCGAGAAAATCTTGCCCGTTTAATTGCTAGACAAGATTTACCCTTGAACTTTGGTGAGAGTCCTGCATTTGAAAATTACATAAAAAATTCTCATAATCCTAGGTTTCAAGCTGTTAGTAGACAAACCACAACCCGTGATTTGAAAAATGTCTATGACAAAGGTTATGAATCACTGAAGGAATTATTTAGTACATGCACCTTTTCTGTCAGTGTCACCTCAGACATATGGAGTAGTAGGGCTAAAGAGGATTACCTTAGTGTAGTTGTACATTTCATTGATGATGATTGGCAAATGCAAAAAAGAGTTCTTGGCTTAAGGTTAATTGATGTTTCACATACTGGTGAAAATATAGCAGAGAGAATTCGAGAGGTTATTGATGAGTTTAACCTTGCAGATAAAATTTTTGCTGTAACAATGGATAATGCATCTGCAAATTCTAGGGCCATGGAAATTCTACAACCATTATTTTGTATTTATGCTCAATCATTTCTTCTGCATCAGCGTTGTGCATGCCATATCATTAATCTAATTGTTAAATGTGGGTTTAAGAGAGTTAATGTACACATCGACGCTGTTCGTCAAGCAATCACGTGGTTAACTGCTTCAAACCCACGGATTGCACAGTGGAAAAGGTATTGTTGTGCATCGGGTGAGCCCCCACATAAGTTTTTAACCGATGCAGACCATCGGTGGAATGCCACTTATTTTATGTTAAAGGTTGTATTACCTTACAAGGATTTACTTACTGTTTTCCTTCAAACACGTAATGGCCCAAAAAATAGTGACGGCCAACCAATACTGACTGATCATACCTGGCACATTGTTGAAAGGTTCAATCAATTTCTTGAAACGTTTCATGACTGTACTCTTCTGTTATCTCAAGTATATTATCCAACAGCTAATTTAATTTTGCATAATATTCTTGAAATTGCCACTTTGTTGAAAGAGTATGAAAATGATGACCTTTTAATGCCCGTTGTCTTTAATATGAAACAAAAATATCTTAAATATTGGAAAGACATCCCCATGTTGTATTCTTTTGCATTTATTCTTGATCCTAGGGGAAAATTACGGGGATTCCTCAATATTCTTTCACTTATTGGAGATATTATTAATGTTGATTATTCTACCTATTATGCTGATGTCAAAACTAAATTCTATGAGGTATTTTGAAAGTATGAATTAAAGTTTTAGGGAGATCGCTTGCAAAGACCCCCACCTGTCCCTGCAGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCCATGGTGGTGGTACCAGTTCATCAGCAGCAAGTGGGGACGCTAGATCGCATGGTCCTGCCGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCATGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGTCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGATGAACAATTAGGGTAG
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| CDS seq | ATGGACGAATCGAACATTCCATCGTTCATGTTAGGTGATTTCGACCCTAACTACGTGTCGAGGTCATTCCCAACTGGTGAGTATGATGCCACCGGATCGGCTCCAACACCACCAGTTATGGAGCCACCGGCGGGTTCAGAAGCATCCGGCACTATGAGTGGGAGTGCATCGACGAACACCGGCTCAAAGAGATCAAGAACTTCCGGTGTTTGGCAACATTTCGATGAGGTGGCCATGACAGGCCCTGATGGAAGGCAGGTAACATTCGCGAGATGTAGAATATGCAAAAATAAGTTATCTGCAAAATCATCTGGTGGAACAGGACATTTGAAGCGGCATGCCGAGGCTTGTGCAAAGAAGCAAGGAATCCAACTACGACAGCAACAACTACTACTAAATCCTGATGGTACGGTACGTACGTGGGAGTATGATCCTATGGTAGCTCGAGAAAATCTTGCCCGTTTAATTGCTAGACAAGATTTACCCTTGAACTTTGGTGAGAGTCCTGCATTTGAAAATTACATAAAAAATTCTCATAATCCTAGGTTTCAAGCTGTTAGTAGACAAACCACAACCCGTGATTTGAAAAATGTCTATGACAAAGGTTATGAATCACTGAAGGAATTATTTAGTACATGCACCTTTTCTGTCAGTGTCACCTCAGACATATGGAGTAGTAGGGCTAAAGAGGATTACCTTAGTGTAGTTGTACATTTCATTGATGATGATTGGCAAATGCAAAAAAGAGTTCTTGGCTTAAGGTTAATTGATGTTTCACATACTGGTGAAAATATAGCAGAGAGAATTCGAGAGGTTATTGATGAGTTTAACCTTGCAGATAAAATTTTTGCTGTAACAATGGATAATGCATCTGCAAATTCTAGGGCCATGGAAATTCTACAACCATTATTTTGTATTTATGCTCAATCATTTCTTCTGCATCAGCGTTGTGCATGCCATATCATTAATCTAATTGTTAAATGTGGGTTTAAGAGAGTTAATGTACACATCGACGCTGTTCGTCAAGCAATCACGTGGTTAACTGCTTCAAACCCACGGATTGCACAGTGGAAAAGGGGAAAATTACGGGGATTCCTCAATATTCTTTCACTTATTGGAGATATTATTAATGTTGATTATTCTACCTATTATGCTGATGTCAAAACTAAATTCTATGAGGGAGATCGCTTGCAAAGACCCCCACCTGTCCCTGCAGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCCATGGTGGTGGTACCAGTTCATCAGCAGCAAGTGGGGACGCTAGATCGCATGGTCCTGCCGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCATGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGTCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGATGAACAATTAGGGTAG
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| Protein seq | MDESNIPSFMLGDFDPNYVSRSFPTGEYDATGSAPTPPVMEPPAGSEASGTMSGSASTNTGSKRSRTSGVWQHFDEVAMTGPDGRQVTFARCRICKNKLSAKSSGGTGHLKRHAEACAKKQGIQLRQQQLLLNPDGTVRTWEYDPMVARENLARLIARQDLPLNFGESPAFENYIKNSHNPRFQAVSRQTTTRDLKNVYDKGYESLKELFSTCTFSVSVTSDIWSSRAKEDYLSVVVHFIDDDWQMQKRVLGLRLIDVSHTGENIAERIREVIDEFNLADKIFAVTMDNASANSRAMEILQPLFCIYAQSFLLHQRCACHIINLIVKCGFKRVNVHIDAVRQAITWLTASNPRIAQWKRGKLRGFLNILSLIGDIINVDYSTYYADVKTKFYEGDRLQRPPPVPAAGKKKLQWSRIWGGSSSSHGGGTSSSAASGDARSHGPAEELSNYLDSDAIMHETSDFNVLGWWNDHKMSYPVLSKLARDVLTVPVSSVSSESVFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLG |
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| Function | Putative AC transposase [UniProtKB/Swiss-Prot:P08770] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g13880 | LOC_Os03g13880.1 | Chr03 | 7527674 | 7529809 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACGAATCGAACATTCCATCGTTCATGTTAGGTGATTTCGACCCTAACTACGTGTCGAGGTCATTCCCAACTGGTGAGTATGATGCCACCGGATCGGCTCCAACACCACCAGTTATGGAGCCACCGGCGGGTTCAGAAGCATCCGGCACTATGAGTGGGAGTGCATCGACGAACACCGGCTCAAAGAGATCAAGAACTTCCGGTGTTTGGCAACATTTCGATGAGGTGGCCATGACAGGCCCTGATGGAAGGCAGGTAACATTCGCGAGATGTAGAATATGCAAAAATAAGTTATCTGCAAAATCATCTGGTGGAACAGGACATTTGAAGCGGCATGCCGAGGCTTGTGCAAAGAAGCAAGGAATCCAACTACGACAGCAACAACTACTACTAAATCCTGATGGTACGGTACGTACGTGGGAGTATGATCCTATGGTAGCTCGAGAAAATCTTGCCCGTTTAATTGCTAGACAAGATTTACCCTTGAACTTTGGTGAGAGTCCTGCATTTGAAAATTACATAAAAAATTCTCATAATCCTAGGTTTCAAGCTGTTAGTAGACAAACCACAACCCGTGATTTGAAAAATGTCTATGACAAAGGTTATGAATCACTGAAGGAATTATTTAGTACATGCACCTTTTCTGTCAGTGTCACCTCAGACATATGGAGTAGTAGGGCTAAAGAGGATTACCTTAGTGTAGTTGTACATTTCATTGATGATGATTGGCAAATGCAAAAAAGAGTTCTTGGCTTAAGGTTAATTGATGTTTCACATACTGGTGAAAATATAGCAGAGAGAATTCGAGAGGTTATTGATGAGTTTAACCTTGCAGATAAAATTTTTGCTGTAACAATGGATAATGCATCTGCAAATTCTAGGGCCATGGAAATTCTACAACCATTATTTTGTATTTATGCTCAATCATTTCTTCTGCATCAGCGTTGTGCATGCCATATCATTAATCTAATTGTTAAATGTGGGTTTAAGAGAGTTAATGTACACATCGACGCTGTTCGTCAAGCAATCACGTGGTTAACTGCTTCAAACCCACGGATTGCACAGTGGAAAAGGGGAAAATTACGGGGATTCCTCAATATTCTTTCACTTATTGGAGATATTATTAATGTTGATTATTCTACCTATTATGCTGATGTCAAAACTAAATTCTATGAGGGAGATCGCTTGCAAAGACCCCCACCTGTCCCTGCAGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCCATGGTGGTGGTACCAGTTCATCAGCAGCAAGTGGGGACGCTAGATCGCATGGTCCTGCCGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCATGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGTCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGATGAACAATTAGGGTAG
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| Protein seq | MDESNIPSFMLGDFDPNYVSRSFPTGEYDATGSAPTPPVMEPPAGSEASGTMSGSASTNTGSKRSRTSGVWQHFDEVAMTGPDGRQVTFARCRICKNKLSAKSSGGTGHLKRHAEACAKKQGIQLRQQQLLLNPDGTVRTWEYDPMVARENLARLIARQDLPLNFGESPAFENYIKNSHNPRFQAVSRQTTTRDLKNVYDKGYESLKELFSTCTFSVSVTSDIWSSRAKEDYLSVVVHFIDDDWQMQKRVLGLRLIDVSHTGENIAERIREVIDEFNLADKIFAVTMDNASANSRAMEILQPLFCIYAQSFLLHQRCACHIINLIVKCGFKRVNVHIDAVRQAITWLTASNPRIAQWKRGKLRGFLNILSLIGDIINVDYSTYYADVKTKFYEGDRLQRPPPVPAAGKKKLQWSRIWGGSSSSHGGGTSSSAASGDARSHGPAEELSNYLDSDAIMHETSDFNVLGWWNDHKMSYPVLSKLARDVLTVPVSSVSSESVFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0801700 | SBH | 0.0 | 0.0 | 2.297632 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55830 | RBH | 0.0 | 0.0 | 0.189826 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0801700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0015330 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0015160 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0015160 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0015170 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0014970 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0031100 | RBH | 0 | 0.0204875 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0014880 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0031900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0015120 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0015130 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0015160 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0015050 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0015000 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G014930 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0014810 | SBH | 0.0 | 0.0 | 0.0 |
