Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g13170 | OGI:03018700 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:7101981-7104766 | ||||||||
| Gene Symbol | ZIURP1, Ub-CEP52-1, UBQ | ||||||||||
| DNA seq | TTTTATTTGGGATTCACGGAAACTAAATTTTGTGGATGGATCTTGGTGATGCTCTTAACATTGCAAACGAGGTGTGACTTGCCACAGTTGCACACCTTACATAAGGTCGAGCAGAGAGCTGGGACCTGGGAGCCTGGGAGCAGAGCCGCTTGCCATCGAAAACAACACTAGAAAATATTGAAACGCACGACAATTTCGACATGACCAATATAGTTTGCTGCCAATTACCATATACCACGACCGTCAAAACAAGAAGCTGAAGCATCCAGCACAGTAAAACACGGTTCAACAACATCCAGGGAGATAACAACGGAAGCATAAAAGTCTAATATGACGATTGATTTAACCAGTCCATGAACCCGGCGAGTGACGCTCTAGTTCTTGATCTTCTTCTTGGGCCTCAGCTGAAAGTGGAAGGACCAGAAATTTTCGTTAGATCAAACAGCCAAAATAAAAAGGGTATGTTGATATGTTATGGTATATGTTATTGAAATCATGCTAGCAAATGCCATGGCCATTATTTACAAGCTTAAAGGCACAAATAACAAATCTAGAACATATGAAAACCCTACTTCCATCCAATCATCATAACAATTCCTAAAGGGTAACCAGAAGATGGACTGAATTGCATGACTACTGTAAAATAATAGTAAGCCCCACTATCAATCATCAAGCTCACCTGGTTGCTGTGACCACACTTCTTCTTGCGGCAGTTGACAGCCCTAGGGTGCAGGCGCGCATAGCATCTGTAGATAAATAACAAGGTCGGTCAAAGTTAAAATTTGTTTTTTTACAGTCCAAGATACATACAGAAATATAAAACATGACCCCTTGGGAGTTATGTACAGCATGAAAAGTTGCAAATAGCATGTCAAATAAAAGCATGCACATACATAGGCAATTGAAAATAAGAGAACATGGACCACAGACATGTAACGAAACACTGAAATACAACAGTAGATTGGCAAGTCAGACAATTGTATGCCTCAAAATTTTAGCTCATAAGGTAACCTCGTACATCTAATTGATTCATCATTCCTGCCAATTAAAAAAGGACCAACTGTCCATACAAACAAATAAAGAAAACCAAATTCACACACCGATAATCAATAACCAAAAATAACAAGAATGAACAAAGCAAATAGGCACTGCAATTTGCAACTATGAAGAGAAGTACATATGGCAGTTCAGACAGAATGTATGCCTCAAAAGTTAAGTTCATAAGGTCACTTCACACATCTAATTGATTCATCACTACTGCCAGGTAGAAAAGTAGCACACTCGACACATAAAACACAGAAAAAATAACACAAAAGACTAAACCAAATAATAGCTGTCTAGAACATGCCAACATGGAAATTCTTTGGCCGTGCATGGTGCATCTTCCAGAGTCTTACACTCTTCCGGAGTATCTATGAAGACAATGTGCCCAGAACTGATGGCCACAGCAAAAATCTAAGGGCATTTACATTGATGGCTCTCAGTCTAGGCCAAAGTTTTCCACACATGAAGATCCATCAGAAGATAGCTTCCCACTTCCTTTTACACTATGCTCCACTATCTCGCTGCATCCTTCAATCGCAATCTTTTGATAAAGGACAAAAACTACGAAAATAAATTCCGTAGTAGTTCTTCACCAAAAGGAAGAGATTTCATAAGGAATCACCGAGAAGGAAGAGCAAAGAGTAATGAAAGAAATGAGATTTTACACTTCCTCCGGTCTTCAAATTCGGTGTGGTTAAAGCAAGAGTAGTCATCATCGAGCCAAATAACTGTTTTTTGCTACTCTGATGCTCACAAAATAGCTGAAAGTAGGGGATAAAATGTTATATAAGTGTTGGACCTACGAGAAAATGCGAGAATCTACTGGAAGAAGCCGCATGTCCAGAGGTCCCCATAATTTATCTTGCATCTCTTCAGAAAAGAAAGCTTCAGGTCCACTTAATGGTGACCGAAGTGACTTATCTTTAAAGCTAGAAGAGTGCACCACAAATAAGTAACGAAACAATAAAAATATTATCTTTTTTATTCCAAGGCTGAATAAAAATGTGTCTCTAGGTTTTGGCTCCATTCCTGACGAACGCAATTCCATATACTCAAAAGATAAACGGCACAAGTACAGGAGAAACGCGCTGGCTAGCTAGCCTGCTTATAAACATGCTACCACTATCCATAGCATCAAGAAAGGAACGAATATGTTGTATGGCTGGATAAAAGTAAAGTAAGATGATTTGGTGAGAAGTTTGTAGCTTACTTGCGGCAGATCATCTTGTCCTGGTTGTACTTGCGGGCAAGCGCCTGAAGCGACGGCTCGATGATACCGCCACGGAGCCTGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGTCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATTCCTGCCGACACAAACCCCCATGAGCTACCGCCGCAAAGCCACAGATGAAGGAGGAGGAACAACAAGAAGAAGAGGGTGTAGTGGGTGCGTACCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATTTGCATCTTGGCGCCCTAGCTGCTGCTTCTTCTTCTTCCCCGGGGCTCTCTCCCCTTTGTCTCTCTAGCTCCTTGCTGCTGCGGCGGCGGGGGGAGAGGAGGCTGGATGTTCGCCGATTTATACGGTGCGAGCTAGGGTTTGGTCTGAAGAGGA
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| CDS seq | ATGCAAATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTCGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGACGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCAGGCTCCGTGGCGGTATCATCGAGCCGTCGCTTCAGGCGCTTGCCCGCAAGTACAACCAGGACAAGATGATCTGCCGCAAATGCTATGCGCGCCTGCACCCTAGGGCTGTCAACTGCCGCAAGAAGAAGTGTGGTCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAG |
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN |
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| Function | Ubiquitin-60S ribosomal protein L40-2 [UniProtKB/Swiss-Prot:P0CH35] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g13170 | LOC_Os03g13170.1 | Chr03 | 7101981 | 7104766 | - | MSU_osa1r7 | ||
| CDS seq | ATGCAAATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTCGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGACGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCAGGCTCCGTGGCGGTATCATCGAGCCGTCGCTTCAGGCGCTTGCCCGCAAGTACAACCAGGACAAGATGATCTGCCGCAAATGCTATGCGCGCCTGCACCCTAGGGCTGTCAACTGCCGCAAGAAGAAGTGTGGTCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.289907 | 13.261591 | 17.988354 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0234200 | RBH | 30.272852 | 31.991102 | 112.729866 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g39500 | RBH | 7.842901 | 6.270913 | 6.391160 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0234200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009960 | RBH | 14.937988 | 229.380051 | 60.636902 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009820 | RBH | 2.153774 | 51.722980 | 22.352228 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0002500 | SBH | 1.181027 | 18.514675 | 16.951279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009790 | RBH | 4.294786 | 11.985158 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009680 | RBH | 93.373726 | 375.870483 | 158.157898 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0117200 | RBH | 116.793167 | 161.617279 | 156.314476 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009600 | RBH | 5.700236 | 17.957287 | 13.577214 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0117200 | RBH | 122.277973 | 175.166916 | 276.8135835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009690 | RBH | 3.502578 | 3.570722 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009800 | RBH | 4.849005 | 223.104874 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009690 | RBH | 63.583721 | 403.040344 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0002550 | SBH | 0.462654 | 1.317762 | 2.510011 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009710 | RBH | 2.525129 | 121.133530 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009710 | RBH | 7.507425 | 176.373642 | 41.311569 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009610 | RBH | 14.616673 | 245.238281 | 131.829956 |
