Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g10940 | OGI:03015200 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:5616047-5620727 | ||||||||
| Gene Symbol | CK2ALPHA3, OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3 | ||||||||||
| DNA seq | ATCTCTGAATCTTTTTTGAAAAGAGATTATCTCTGATAATCTGATTTATAGACTCGGCACTTTATGATGTGTTTCAAAATTTAAGGATGTTAGGCACCGCTCAGCAGCAAGCGGACCTAAGGCGCAACATGCTACAACTTTTGCGTTGCCTCAGTAGAATAGAATAAAACAAAGGAGCAAATCTGCAACAGATTTCCAGTGCAATCCAACAGCAGCAGATGGCGTTCCGTTCATGTTACGTTCTCATTCTGCAGTCTTCTGCTGCCCTCACTTGTTCAAAGTAGGGATGCGCCTGCAGGGGAGACAAAAAGCAGCATATGTTACAGACTTGCGATCCAGGGTCCAGGCCAACAAACTGTTTGCAATACATATGCTCGACCAACAGCAAGTTAAGCCTGTGAATGAATAGCTTGACAGGAACCAACCATAGCTTCACGAGCGGTCAGCCTGTCATGGTGGTCGAAGCGAATAAGTTTATCAAGAAAATCAATAGCCTGCACAAAGATTGGTGCGACGTTTAGTCCTGTACTCCTGATAGAGGGAAATGGGATATGGAAAAGAAAAATCATAGGACGAGAAGGAAATGCATATAACCTCTGGAGAGACAAGATGCCTATTTTCTGGATTTATAAACTTAGACCAAGGTTTCCTGGTATGCCTGTGTGTAGAGCAACAACAAATGTATCAAGTAATTTTTTTTTTACTAATCCAAAATGTGATATGAAGTGAAAGCATCAGAACAAATATTCTACGAGGTAATACCTCCCAATCAGAGCCTCAAGCTGGGGATCAAGTGCAATCCTGTATTTATTCAGGTAAGCATTAAGCTGGTCTGTACCTAGAACCTGCTCAGGTATAGTTCATCAATATGCTAATGCCTGCAATATTTTCAGGCAGAAAGCAGAGCAGACATATACAGATACAAGTGCAAATGCTCAGCATAAACACATGCGCATGCGTCTATGTGAACTGTAGCAAACCTTGGCTATTTTGACAAGCTGGTCATGGTTATCGTGGCCATAGAAGAATGGTTCCTTGCGAAATATCTGCATCAAAAACAGTAAATAAAGCATAACAGTTGCTATCTTTCTATACGCAAGTAATTTACAGAAGTAAGGCCATGGCAATTTTGATAGGTTATTTTATAATCATAGGAGGGCAAACACACCATTCCAGCAAACATACAGCCAAGGCTCCACATGTCTAAAGAGTAGTCATAACTTTGGAAGTCAACCAGCAATTCAGGCCCTTTGAAGTATCTGGATAAAGAAAATAAGTTTGCAGATAAAACTATCCACATTTTCAAATATAAGAAAACTTATATAGTCTTCTAAAACCAATAAATTTGCTATAACACTGGTAACAGAGGATGGATTCTGCTTATCCATAAAATTAGCAAATTCAAAATAATTATTTTGCTAACAAATATTATGCAGAATAAAGGTAACAAGCGATGGCATAAGGCTATGTCACTTCAGATATTTTTTATTGAAATAACAAACGATAATCCATAAATATGAATATGAAACTAATAGGAAGCTAAACTAGTCCCAAGCACTCTATAAATAATGTTCTATAATGGAAATTTAGATATCTTCTTGGGGTTAATAGGATGGGGTAAACATTTAAATAAACAGGACACCATCAATTGACGGAGCTACAGAATCATGAAGGCATATTTTATGAACTTGCCTTGAGGCAACCCGAACATTGTACTCTTTCTCTGGAAAATAAAACTCAGCAAGTCCCCAATCAATTAAGCGAAGCTTGCGGAGTTCATGGTCAATCATAACATTGTGAGGCTTGACATCGCGGTGCATAATTCCTTGAGAATGACAGTAATCCAATGCCTGGAAGGTAAGCAGGACGGAATTTAGAAAAAAGATAACAGGAGATTAGAAATAAGTCCTGGCTACTAAATCGACGAACACCGAACAAGCCCAACTGAATAACGGAAGCCATAGAAGGGAGATTATTGAAACTAGTAACTAAATAAGAATATAATAGAATGTTCTGTAATTACCACATATCCTTTTTGTTATCAGTACATTCACATAAACAATTAGGTAGACTTTCTATGTTACCGTCTGACATGAAAGAAACAAACTTTATAAGTGGACCATATATGCAAGACTAATCAAGCAGAACATAAAGTTGCAACATTTGTTTCAGCCTCTAATTCAAACTACTGTAGGCCATAGCATTAATACTAAGTATGCTAGAGAGTCAAGTTAATCAATTTATAGATTAATGCATACAGTTCTATAAGACATTCAACATTGCAATAAACAACAATTGCATCATAGTCACTATCTACCAGGCATAGCCTTTCCATAATGCCATCGTGAAATATGTTAAGCTAATGCCACTTGGAACAACCACAACCCACAACTCCACAAGCACAATTCAAGAGCTTGTTATTAAGTCCATACATAGCCAATGGTCACCATCTGAAGGGGTATGTACATACAGATATTTCAAACTATCATTGTTAGACTAAAGCACAAAAACTGATTTGTAAGCGTGAACTTATTGTAGCACAATGGATTTGGGCAAAGTTTAGCTTAATATGGTGTGATAGGAACAATCAGACCCAAGTATTGACAACTATATTCATCACAAGAGCTGAAATTTTCAACACTTCTACTAATGACTAAATTAAAACAGAAGCGCTACCTTAAGAAGTTCATAAATGTAGAATCGAATATCATAGTCTGTCAATGTTGGATACAGAACTTTGAAATCTGTGCTGTTTACATATTCAAATATCAAACTTGGAGTTTTTGATTGTTGATCTCTGACAATATTGTGAAGTTTGACAATATTTGGACCACCACAGAGGTTCTGAAGAATTTTTATTTCCCTCTTTATCTGCAAAAGAATTAAACTGCTCATATATAATAGCACAGAGAATTCTAATAAGCACATGAGCAAACAGAGAACAGTTCGGAAGAAAAGATATGAGGTTAAATATCCAACAAATGAGCAAAAGTGAGATCGCTCATTGTAGTGGAAAGGAGCACAAAAACTAAATAATAAAAACTGTAGTTAATAATAATCTAACTTCTTAAGTACCACCATCCATACAATCTAGTAACTGGATTCAATGAAGTAACTGAATTCAAAAGTACCAACAGCCATAAAATCTGAAAATGGCACAAATGGACTTGAACAGAATTAGGATGTTAAAATTTAGCTGATTTAACCAAGGAACAAGTCAGCGTTTAGAGAAGTAGGCAATGCAGGTTTGATCCATCAAACTGTTCCAAGTATTGAGTGTGTCGCGAGGAATAATTTAAGCAGAACATCCATATATGTTAATTTTCAAAGAAAACAAGGATACCTTCTTTTTCTTAACAGGCTTGAGAATTTTAATGATGCAGCGCTCATCATTTGTCACATTAATTCCTTCGAAGACTTCACTGTATTTCCCTCTGCCTACCTTTCGCACAACCTCGTAATCATCCTGCTCACTGAATGGAGAAGAACAATCCATTGGTAACAGAGCATAACTAAAAGAAAATAAATAGTTTGATTTTTTTTTACTTCACATTCCCCCAAGTTGTCAATTAAAACAGTCAAATAGATATTAGCAAGGTAGAAGAACATTTTTTAATCATGATAACAATATATGGTCATGTAAATGCTGTCTATTATCCAGTTAGGCATATTGGTTGGTGCAAATCTAGTTTATTTCACCAAAACCTCCTCTGGCCATACATTGAGATAAAATGGTTTCCCTCAATGAATATATTTGTGAGTGATTTTAGTAGTGTAGAATGTAGTTCCCTCAATGCACACACAGCTCACATGATAAATCTAGTCAGATGACCCACCAAAAAAAAAGGCCATCAATAGTATTGAAGAACAGTGCCCATTTGTTCAACTAATATATATATACCTCCCCAACTACAATTAGGAAAACTTTAGCAACTAATCCTTCCTGTCAAACTTCAAACTATCACCGAGATGAAAGGAATTGTATGATCATAGCTTGGTAACAAAGGTTTCGAAATATACAGTATCAAAAACAGAAGGTCCAACTCTAAATTGGCAACACGATGATGACCAGACCCAATAGCCACATCGAGCGATACCACTGCCGAACAACACACCGATCGACAACAGCTAGTTCGCAGCTCGCACAATCTCCGCAGTTCAATCGTACGATCTATCCCCAACCCTCCAGCAACACACACACAGTCACAGATGCAATCATCTCGCATCGCTACGTTATTCTAGGCGACGACGACACGAGTGGGGGGGGGGGGGGGGGGGACAATCACACGGTAGCACGGCGAGGCGTAGGTGGGAAGGAATCAGTTCTTACCCCCATTCGACGGCGAGGGCCTCGTAGTCCCAGTACTCCCTGGGGCGGTGCACGTTCACGTCGGCGTAGACGCGGGCCGTCGACATGGCCGCCGCCGCCGCTACCGACGCCACCGAGCGGGCGCGGGGGAGGGACCCCGCGTGCGCCCCCGCCGCCGCGAGCGCCGCGACGGCGCCTGTGGCGAGGGAGCCGACGGTGGCGAGGAGGGAGGGGAGTATGGCGCTCGTGGTAGCGGTGGCGGTGGCGGTGGCCGGCGCGCGCGGCGAGGCCCGATCGGATTTTTTTTTTCCTTCTTCTGGGTGGGGTCGGGTGCTCTGGTCGGGTCGGAACGCGACGGGGTCGCTATATCAT
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| CDS seq | ATGTCGACGGCCCGCGTCTACGCCGACGTGAACGTGCACCGCCCCAGGGAGTACTGGGACTACGAGGCCCTCGCCGTCGAATGGGGTGAGCAGGATGATTACGAGGTTGTGCGAAAGGTAGGCAGAGGGAAATACAGTGAAGTCTTCGAAGGAATTAATGTGACAAATGATGAGCGCTGCATCATTAAAATTCTCAAGCCTGTTAAGAAAAAGAAGATAAAGAGGGAAATAAAAATTCTTCAGAACCTCTGTGGTGGTCCAAATATTGTCAAACTTCACAATATTGTCAGAGATCAACAATCAAAAACTCCAAGTTTGATATTTGAATATGTAAACAGCACAGATTTCAAAGTTCTGTATCCAACATTGACAGACTATGATATTCGATTCTACATTTATGAACTTCTTAAGGCATTGGATTACTGTCATTCTCAAGGAATTATGCACCGCGATGTCAAGCCTCACAATGTTATGATTGACCATGAACTCCGCAAGCTTCGCTTAATTGATTGGGGACTTGCTGAGTTTTATTTTCCAGAGAAAGAGTACAATGTTCGGGTTGCCTCAAGATACTTCAAAGGGCCTGAATTGCTGGTTGACTTCCAAAGTTATGACTACTCTTTAGACATGTGGAGCCTTGGCTGTATGTTTGCTGGAATGATATTTCGCAAGGAACCATTCTTCTATGGCCACGATAACCATGACCAGCTTGTCAAAATAGCCAAGGTTCTAGGTACAGACCAGCTTAATGCTTACCTGAATAAATACAGGATTGCACTTGATCCCCAGCTTGAGGCTCTGATTGGGAGGCATACCAGGAAACCTTGGTCTAAGTTTATAAATCCAGAAAATAGGCATCTTGTCTCTCCAGAGGCTATTGATTTTCTTGATAAACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAACGTAA
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| Protein seq | MSTARVYADVNVHRPREYWDYEALAVEWGEQDDYEVVRKVGRGKYSEVFEGINVTNDERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLHNIVRDQQSKTPSLIFEYVNSTDFKVLYPTLTDYDIRFYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYFPEKEYNVRVASRYFKGPELLVDFQSYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDQLNAYLNKYRIALDPQLEALIGRHTRKPWSKFINPENRHLVSPEAIDFLDKLIRFDHHDRLTAREAMAHPYFEQVRAAEDCRMRT |
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| Function | Casein kinase II subunit alpha-2 [UniProtKB/Swiss-Prot:B6F107] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g10940 | LOC_Os03g10940.1 | Chr03 | 5616047 | 5620727 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGACGGCCCGCGTCTACGCCGACGTGAACGTGCACCGCCCCAGGGAGTACTGGGACTACGAGGCCCTCGCCGTCGAATGGGGTGAGCAGGATGATTACGAGGTTGTGCGAAAGGTAGGCAGAGGGAAATACAGTGAAGTCTTCGAAGGAATTAATGTGACAAATGATGAGCGCTGCATCATTAAAATTCTCAAGCCTGTTAAGAAAAAGAAGATAAAGAGGGAAATAAAAATTCTTCAGAACCTCTGTGGTGGTCCAAATATTGTCAAACTTCACAATATTGTCAGAGATCAACAATCAAAAACTCCAAGTTTGATATTTGAATATGTAAACAGCACAGATTTCAAAGTTCTGTATCCAACATTGACAGACTATGATATTCGATTCTACATTTATGAACTTCTTAAGGCATTGGATTACTGTCATTCTCAAGGAATTATGCACCGCGATGTCAAGCCTCACAATGTTATGATTGACCATGAACTCCGCAAGCTTCGCTTAATTGATTGGGGACTTGCTGAGTTTTATTTTCCAGAGAAAGAGTACAATGTTCGGGTTGCCTCAAGATACTTCAAAGGGCCTGAATTGCTGGTTGACTTCCAAAGTTATGACTACTCTTTAGACATGTGGAGCCTTGGCTGTATGTTTGCTGGAATGATATTTCGCAAGGAACCATTCTTCTATGGCCACGATAACCATGACCAGCTTGTCAAAATAGCCAAGGTTCTAGGTACAGACCAGCTTAATGCTTACCTGAATAAATACAGGATTGCACTTGATCCCCAGCTTGAGGCTCTGATTGGGAGGCATACCAGGAAACCTTGGTCTAAGTTTATAAATCCAGAAAATAGGCATCTTGTCTCTCCAGAGGCTATTGATTTTCTTGATAAACTTATTCGCTTCGACCACCATGACAGGCTGACCGCTCGTGAAGCTATGGCGCATCCCTACTTTGAACAAGTGAGGGCAGCAGAAGACTGCAGAATGAGAACGTAA
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| Protein seq | MSTARVYADVNVHRPREYWDYEALAVEWGEQDDYEVVRKVGRGKYSEVFEGINVTNDERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLHNIVRDQQSKTPSLIFEYVNSTDFKVLYPTLTDYDIRFYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYFPEKEYNVRVASRYFKGPELLVDFQSYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDQLNAYLNKYRIALDPQLEALIGRHTRKPWSKFINPENRHLVSPEAIDFLDKLIRFDHHDRLTAREAMAHPYFEQVRAAEDCRMRT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.117723 | 0.338942 | 1.410865 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0207300 | RBH | 2.428667 | 0.486037 | 6.651855 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g55389 | SBH | 0.103695 | 0.543562 | 1.021000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0207300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0007880 | RBH | 0.325565 | 8.536742 | 5.986610 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0007850 | RBH | 0.214818 | 2.939939 | 1.963289 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007930 | RBH | 1.503980 | 11.358132 | 9.333642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007910 | RBH | 0.452080 | 0.322993 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007790 | RBH | 7.315489 | 7.725433 | 25.101049 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0094900 | RBH | 5.092213 | 8.165173 | 7.0156615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007730 | RBH | 0.267036 | 0.990738 | 1.571562 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0095400 | RBH | 3.971008 | 3.973254 | 10.344492 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007750 | RBH | 0.183632 | 0.077149 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007810 | RBH | 0.928419 | 3.749609 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007800 | RBH | 3.306783 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0007810 | RBH | 1.159126 | 1.019017 | 1.223427 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007780 | RBH | 0.635717 | 5.555020 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G007830 | RBH | 0.606357 | 2.402391 | 3.951617 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0007640 | RBH | 1.151436 | 14.962389 | 8.254994 |
