Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g55510 | OGI:02095900 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:33987024-33987714 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTAAAAGCCCAAACACCTCTGGATTTATTTAATCATCAATTGAAATATTATTACATATGTCTCCCGTAATATTGGGAAGAACGACATACCAAATCAATCACTCGGAAGTTATAAACTTCAACAAAAGGAAACAACTTAAAAGGTAAAAGGAATAAACATGACAATGTAATGCAGGGCTGGCCGTTGGGTGAGAACCATTAATAATGTCGTCGCTCGGTCATGATGAAGGAACAGATGGGGAGGTACTACATAATATAATCATGCTTGTTTCGTTGTTTGAATATAAGCGACGACTTTATCAAGGAATACCTCGGCCTCCTTAGCATCAGCTTCGCAACTTTCTGCACACTTCTTGCTTGTGGCGGGATCCTCCTTATATACTGCATTACACTCATTGTTGCAAAAATCTATGAATCTATCCGCCTTTAGATCCTTCACTCCCTTATGGGCCTCAAATATAGACTTGGTCTTGATGAAGCAGAAGTCTTCACATTGTTTCTCGTCGATGGGGGCTTTCTTTTTCTGCTCACTGCATTCCTCTTTGCACCCAGCTCTCACTGCCTCCTCTAGCGTCTCTGGCTCCTTTCCCATGACCGCCACAAGGGTGGCAAGGAGCAGGGCCACCGCAATGGTCTTGTTCTGGGCCATTAGCGCTGTTTTTCTTGAGTGTAATTGGTGTGGAACAAAGAT
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| CDS seq | ATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGA |
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| Protein seq | MAQNKTIAVALLLATLVAVMGKEPETLEEAVRAGCKEECSEQKKKAPIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAESCEADAKEAEVFLDKVVAYIQTTKQA |
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| Function | Uncharacterized protein Os02g0798501 [UniProtKB/Swiss-Prot:B7F6L8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g55510 | LOC_Os02g55510.1 | Chr02 | 33987024 | 33987714 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGGTCATGGGAAAGGAGCCAGAGACGCTAGAGGAGGCAGTGAGAGCTGGGTGCAAAGAGGAATGCAGTGAGCAGAAAAAGAAAGCCCCCATCGACGAGAAACAATGTGAAGACTTCTGCTTCATCAAGACCAAGTCTATATTTGAGGCCCATAAGGGAGTGAAGGATCTAAAGGCGGATAGATTCATAGATTTTTGCAACAATGAGTGTAATGCAGTATATAAGGAGGATCCCGCCACAAGCAAGAAGTGTGCAGAAAGTTGCGAAGCTGATGCTAAGGAGGCCGAGGTATTCCTTGATAAAGTCGTCGCTTATATTCAAACAACGAAACAAGCATGA
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| Protein seq | MAQNKTIAVALLLATLVAVMGKEPETLEEAVRAGCKEECSEQKKKAPIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAESCEADAKEAEVFLDKVVAYIQTTKQA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.404287 | 0.232405 | 10.182012 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0798400 | SBH | 0.353320 | 0.115180 | 42.876575 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55500 | RBH | 0.234854 | 0.076146 | 10.856363 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0798501 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0037130 | RBH | 0.072179 | 0.0 | 29.770575 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0037230 | SBH | 0.0 | 0.0 | 49.866425 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0037050 | RBH | 0.0 | 0.0 | 93.699066 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036690 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036880 | SBH | 0.0 | 0.0 | 81.681519 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0557000 | RBH | 0.0035155 | 0.0400185 | 0.013408 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036660 | RBH | 0.0 | 0.0 | 45.674889 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0587400 | SBH | 0.285241 | 0 | 0.019114 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036900 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036970 | RBH | 0.0 | 0.0 | 5.526893 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G037330 | SBH | 0.000000 | 0.000000 | 11.935510 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036940 | SBH | 0.0 | 0.0 | 97.484192 |
