Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g47530 | OGI:02082110 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:29038934-29039260 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGAAAAATACATAAAGCACAAAAGCCGCCATGAAAACCCTCTTTTTATCTATTGTCTTGGGATAACCATACTGCTTCTTTAGGATTCTCTCTAAGAGTGATATTTTGAGGTGTGAAAAGTTTGGTATCTCAAATATTTCACACAATATTTGTTTCTTCCCATCCAATTCATCTTGAGAGCAAGGGATAATAGGTTGACCTGAGCATGGCAAGCTAAAAACTGCATTGACATCATTAGAACCGAATGGCAGCTCCTGGTTGACATCTTTAACAATAGCGCATGATTTCGGATCAACTTTGCTCAGTTGCCATGCCCCAAACTGCAT |
||||||||||
| CDS seq | ATGCAGTTTGGGGCATGGCAACTGAGCAAAGTTGATCCGAAATCATGCGCTATTGTTAAAGATGTCAACCAGGAGCTGCCATTCGGTTCTAATGATGTCAATGCAGTTTTTAGCTTGCCATGCTCAGGTCAACCTATTATCCCTTGCTCTCAAGATGAATTGGATGGGAAGAAACAAATATTGTGTGAAATATTTGAGATACCAAACTTTTCACACCTCAAAATATCACTCTTAGAGAGAATCCTAAAGAAGCAGTATGGTTATCCCAAGACAATAGATAAAAAGAGGGTTTTCATGGCGGCTTTTGTGCTTTATGTATTTTTCTAG |
||||||||||
| Protein seq | MQFGAWQLSKVDPKSCAIVKDVNQELPFGSNDVNAVFSLPCSGQPIIPCSQDELDGKKQILCEIFEIPNFSHLKISLLERILKKQYGYPKTIDKKRVFMAAFVLYVFF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g47530 | LOC_Os02g47530.1 | Chr02 | 29038934 | 29039260 | - | MSU_osa1r7 | ||
| CDS seq | ATGCAGTTTGGGGCATGGCAACTGAGCAAAGTTGATCCGAAATCATGCGCTATTGTTAAAGATGTCAACCAGGAGCTGCCATTCGGTTCTAATGATGTCAATGCAGTTTTTAGCTTGCCATGCTCAGGTCAACCTATTATCCCTTGCTCTCAAGATGAATTGGATGGGAAGAAACAAATATTGTGTGAAATATTTGAGATACCAAACTTTTCACACCTCAAAATATCACTCTTAGAGAGAATCCTAAAGAAGCAGTATGGTTATCCCAAGACAATAGATAAAAAGAGGGTTTTCATGGCGGCTTTTGTGCTTTATGTATTTTTCTAG
More
|
|||||||
| Protein seq | MQFGAWQLSKVDPKSCAIVKDVNQELPFGSNDVNAVFSLPCSGQPIIPCSQDELDGKKQILCEIFEIPNFSHLKISLLERILKKQYGYPKTIDKKRVFMAAFVLYVFF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0307600 | SBH | 1.108489 | 0.972281 | 4.343823 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63040 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0307600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025570 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025720 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019060 | SBH | 0.679885 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018810 | SBH | 0.056133 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025240 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0312300 | SBH | 0.7616705 | 0.4634385 | 0.0556815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025080 | SBH | 0.0 | 0.0 | 0.049902 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0142200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019030 | SBH | 0.031512 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018750 | SBH | 0.412376 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019170 | SBH | 0.691711 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018900 | SBH | 0.264230 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019100 | SBH | 0.493623 | 0.0 | 0.568950 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030250 | RBH | 0.0 | 0.0 | 0.0 |
