Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g21320 | OGI:02035230 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:12652067-12654531 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGCGCAGCGGATTGGGCCTAGCCAGCCCTGAGCTCAATATGCATACCAATCCGACCCAATTACATAACATTCTCCCCGCCTTGAAAATCAGCTTGTCCCCAAGCTGATGCAATTGAAGCTCAAGATCAGTGCCTCCAGGATCCCAGGGTAGCTGCAAGTGATCATCAAGAGCTAATCCGTAAGCACCAGCTGATCCATAAAATGCAACCACAAGAGACGACTCCATGCCAATAGAAGTGACAAAACTTGCACTCTGGTGGATGCATTGCACCTCCATTTGTCCAGAATTATAGTTAGGGATCTTGATACTAGTCCCAAGCTTTCTATATGGAAGGACAACAAATATGGTCAATGATAGAGAAATGCTAGATACTGTGCCCACTTGGATACTATCATGAGCATTCTTGTACTTGCAAACTGAGCTGAGATCAAGAGTATCACTCCCTCCCTTCTTCACTTCTGTAGAAATTTGGCAAGCTATTATAGTAACTAAATTGACAATACCTGGATCCCAAGATCTTATTCTTGTCATCTCAGCAATCTTGACATGCACAAGCTTCACTGCCAATTGCACAGTCCCAGCATCTAGGAAATTTATCAGGGCAAAAGCAGATAATAGCCATGTCCTCCCAACTGCTACAACATGGATCCATTTGCTTGGCATGACAGGAGTCCCTGTCACATCATACACTATATTTTCAGAAACACTGCAATATACAATGCTGATTTGATGACAGTATAGCAACATCTTATCAACACCATCAATTTGTTGCTTTATCATTCCTTGAAAAGGAAACCCTTGGTAAGCTGGAGCATCCACCATATATTTTCTCCATTGATAAGGCTTGCTCAAGAAATAATTAGCTGAGAATTTGAACCGACACCAACTCATAACTTGTTGAACCAGTAAATTTTCATTCTCAAATCGAGTTAGATTGTAGCTTGAAACTAGCTGTCCCAATGACTGCATAGGCAGAGCAGTATCAATCATATCTCCAACTAAAAGATTTGAAAAACTGTACCAACTGGACTTGACAACCTCACACTTCAGTTGCTCTTCCAGTAACATCCGTTCACCCAACAATTGTAGACCTTCTATGGTAGCCTTGGGGACCGAATAGACTGTTACGATAATCTGAATCTTTAGTTTCTGACCATGTAGATTCAGTTTTTCCACTTTAGCTTTAACTTCTGCTTGAATAGGTGGTGGCCAGGGCTGTAAGAGCTTCACCACCACGCCTCCGCTGCCTTGATTAAATATATCTGGCCATGGCAAGAATCGAAAATCCAGTGGGACTGCCAGTCTCCAGGGAGGTACTACTTGCGGTCTAGCTGTGAAATCTGCCCCTGAGACAAAATCATCGCAGCAGACCTCACATTCAGAAGAGACAACAGGAAGGTTGGTGACAACAATGTGATTGCTCCGGCACAAAGTCAAACACACATCTGTAAATGGTCTGAACACAAAAATGAGCTTGGTATCCACCTTGGTAAACTTGACACAATTATCAGTGACCATACCACCGACATCACCATCAACCTTTTCCTTTTTGCTTTTTGTCAAACCCTTGGTTGGTTTCACTGTCACCATACTAAGCTTGTTAGTGTTGACAAGATGAGTTGAGTTAGCCTCATTACTGACCTCTGATAAGATGGGTACTGGATCAATGTTAACGCTTAGTGCCGTGGCATCTCCATTGCAATCCACACTCACGGTATAATCCTCCTTGGTGTTACGGCATGTCTCCAACATTTTATTGATCATGGCCATCATCTTAGTGTTCAAGTCCTGAGTGGTTTTCTCTGATTTCAACACCTCCTTGTCCATGCCAGCCCCAACATCCTTGGTCTCGGTGGAAGGTGCCGGAGTCGTCATGGTTGTTGATGAAGTTGAGGATGCCAATGAAGCTTTAGTGGCTGGGAACACGCGTTCTGTTGCAGCTGGTATGCTCTTGGCCCCTGACGTGGTGGTGGCATAACTTGGTCCCAACGTCGAACACTTGGTGGGCATCACGTTAGCACCATTTCCAGGGAAAGACGCGTGTGCTGGACATCAAGCAGGCAACACCCATCGTAAATGTTGCGTTCATTGGTGTCAGATCGAGCCCTTTCTGCGTCATAGCTTGACCGGAACCAGACTAGCGCCTCAATGCCCCAACAACTCGTGGCGAGCACTTGCACCGCCACTGCTCCATAGCCGTTGTAGACTTGATGTAGTACCTCGCTAGTCATCGGGTAAAGGACTTGGCTCACTTGGACACGAAGAACAGCGCCAGCACCAGCTCCCAGCCAGCTCGGCATTTCTCCGAACACCTGGCAGGCGCCTCCAGTGAAACCACCTCCAATGCTTGGATCTAGCCTCTGGACGTCACTGCTGCCACTGTGTGTCATCCACCTTGCCTTCTGGTATGGAATCCCACGGATTGTTGGCTCTGATACCTTATTGTTACGAACCCACTCCAT
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| CDS seq | ATGGAGTGGGTTCGTAACAATAAGGTATCAGAGCCAACAATCCGTGGGATTCCATACCAGAAGGCAAGGTGGATGACACACAGTGGCAGCAGTGACGTCCAGAGGCTAGATCCAAGCATTGGAGGTGGTTTCACTGGAGGCGCCTGCCAGGTGTTCGGAGAAATGCCGAGCTGGCTGGGAGCTGGTGCTGGCGCTGTTCTTCGTGTCCAAGTGAGCCAAGTCCTTTACCCGATGACTAGCGAGGTACTACATCAAGTCTACAACGGCTATGGAGCAGTGGCGGTGCAAGTGCTCGCCACGACACACGCGTCTTTCCCTGGAAATGGTGCTAACGTGATGCCCACCAAGTGTTCGACGTTGGGACCAAGTTATGCCACCACCACGTCAGGGGCCAAGAGCATACCAGCTGCAACAGAACGCGTGTTCCCAGCCACTAAAGCTTCATTGGCATCCTCAACTTCATCAACAACCATGACGACTCCGGCACCTTCCACCGAGACCAAGGATGTTGGGGCTGGCATGGACAAGGAGGTGTTGAAATCAGAGAAAACCACTCAGGACTTGAACACTAAGATGATGGCCATGATCAATAAAATGTTGGAGACATGCCGTAACACCAAGGAGGATTATACCGTGAGTGTGGATTGCAATGGAGATGCCACGGCACTAAGCGTTAACATTGATCCAGTACCCATCTTATCAGAGGTCAGTAATGAGGCTAACTCAACTCATCTTGTCAACACTAACAAGCTTAGTATGGTGACAGTGAAACCAACCAAGGGTTTGACAAAAAGCAAAAAGGAAAAGGTTGATGGTGATGTCGGTGGTATGGTCACTGATAATTGTGTCAAGTTTACCAAGGTGGATACCAAGCTCATTTTTGTGTTCAGACCATTTACAGATGTGTGTTTGACTTTGTGCCGGAGCAATCACATTGTTGTCACCAACCTTCCTGTTGTCTCTTCTGAATGTGAGGTCTGCTGCGATGATTTTGTCTCAGGGGCAGATTTCACAGCTAGACCGCAAGTAGTACCTCCCTGGAGACTGGCAGTCCCACTGGATTTTCGATTCTTGCCATGGCCAGATATATTTAATCAAGGCAGCGGAGGCGTGGTGGTGAAGCTCTTACAGCCCTGGCCACCACCTATTCAAGCAGAAGTTAAAGCTAAAGTGGAAAAACTGAATCTACATGGTCAGAAACTAAAGATTCAGATTATCGTAACAGTCTATTCGGTCCCCAAGGCTACCATAGAAGGTCTACAATTGTTGGGTGAACGGATGTTACTGGAAGAGCAACTGAAGTGTGAGGTTGTCAAGTCCAGTTGGTACAGTTTTTCAAATCTTTTAGTTGGAGATATGATTGATACTGCTCTGCCTATGCAGTCATTGGGACAGCTAGTTTCAAGCTACAATCTAACTCGATTTGAGAATGAAAATTTACTGGTTCAACAAGTTATGAGTTGGTGTCGGTTCAAATTCTCAGCTAATTATTTCTTGAGCAAGCCTTATCAATGGAGAAAATATATGGTGGATGCTCCAGCTTACCAAGGGTTTCCTTTTCAAGGAATGATAAAGCAACAAATTGATGGTGTTGATAAGATGTTGCTATACTGTCATCAAATCAGCATTGTATATTGCAGTGTTTCTGAAAATATAGTGTATGATGTGACAGGGACTCCTGTCATGCCAAGCAAATGGATCCATGTTGTAGCAGTTGGGAGGACATGGCTATTATCTGCTTTTGCCCTGATAAATTTCCTAGATGCTGGGACTGTGCAATTGGCAGTGAAGCTTGTGCATGTCAAGATTGCTGAGATGACAAGAATAAGATCTTGGGATCCAGGTATTGTCAATTTAGTTACTATAATAGCTTGCCAAATTTCTACAGAAGTGAAGAAGGGAGGGAGTGATACTCTTGATCTCAGCTCAGTTTGCAAGTACAAGAATGCTCATGATAGTATCCAAGTGGGCACAGTATCTAGCATTTCTCTATCATTGACCATATTTGTTGTCCTTCCATATAGAAAGCTTGGGACTAGTATCAAGATCCCTAACTATAATTCTGGACAAATGGAGGTGCAATGCATCCACCAGAGTGCAAGTTTTGTCACTTCTATTGGCATGGAGTCGTCTCTTGTGGTTGCATTTTATGGATCAGCTGGTGCTTACGGATTAGCTCTTGATGATCACTTGCAGCTACCCTGGGATCCTGGAGGCACTGATCTTGAGCTTCAATTGCATCAGCTTGGGGACAAGCTGATTTTCAAGGCGGGGAGAATGTTATGTAATTGGGTCGGATTGGTATGCATATTGAGCTCAGGGCTGGCTAGGCCCAATCCGCTGCGCTAA
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| Protein seq | MEWVRNNKVSEPTIRGIPYQKARWMTHSGSSDVQRLDPSIGGGFTGGACQVFGEMPSWLGAGAGAVLRVQVSQVLYPMTSEVLHQVYNGYGAVAVQVLATTHASFPGNGANVMPTKCSTLGPSYATTTSGAKSIPAATERVFPATKASLASSTSSTTMTTPAPSTETKDVGAGMDKEVLKSEKTTQDLNTKMMAMINKMLETCRNTKEDYTVSVDCNGDATALSVNIDPVPILSEVSNEANSTHLVNTNKLSMVTVKPTKGLTKSKKEKVDGDVGGMVTDNCVKFTKVDTKLIFVFRPFTDVCLTLCRSNHIVVTNLPVVSSECEVCCDDFVSGADFTARPQVVPPWRLAVPLDFRFLPWPDIFNQGSGGVVVKLLQPWPPPIQAEVKAKVEKLNLHGQKLKIQIIVTVYSVPKATIEGLQLLGERMLLEEQLKCEVVKSSWYSFSNLLVGDMIDTALPMQSLGQLVSSYNLTRFENENLLVQQVMSWCRFKFSANYFLSKPYQWRKYMVDAPAYQGFPFQGMIKQQIDGVDKMLLYCHQISIVYCSVSENIVYDVTGTPVMPSKWIHVVAVGRTWLLSAFALINFLDAGTVQLAVKLVHVKIAEMTRIRSWDPGIVNLVTIIACQISTEVKKGGSDTLDLSSVCKYKNAHDSIQVGTVSSISLSLTIFVVLPYRKLGTSIKIPNYNSGQMEVQCIHQSASFVTSIGMESSLVVAFYGSAGAYGLALDDHLQLPWDPGGTDLELQLHQLGDKLIFKAGRMLCNWVGLVCILSSGLARPNPLR |
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| Function | Mitochondrial outer membrane protein porin 5 [UniProtKB/Swiss-Prot:Q84P97] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g21320 | LOC_Os02g21320.1 | Chr02 | 12652067 | 12654531 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGTGGGTTCGTAACAATAAGGTATCAGAGCCAACAATCCGTGGGATTCCATACCAGAAGGCAAGGTGGATGACACACAGTGGCAGCAGTGACGTCCAGAGGCTAGATCCAAGCATTGGAGGTGGTTTCACTGGAGGCGCCTGCCAGGTGTTCGGAGAAATGCCGAGCTGGCTGGGAGCTGGTGCTGGCGCTGTTCTTCGTGTCCAAGTGAGCCAAGTCCTTTACCCGATGACTAGCGAGGTACTACATCAAGTCTACAACGGCTATGGAGCAGTGGCGGTGCAAGTGCTCGCCACGACACACGCGTCTTTCCCTGGAAATGGTGCTAACGTGATGCCCACCAAGTGTTCGACGTTGGGACCAAGTTATGCCACCACCACGTCAGGGGCCAAGAGCATACCAGCTGCAACAGAACGCGTGTTCCCAGCCACTAAAGCTTCATTGGCATCCTCAACTTCATCAACAACCATGACGACTCCGGCACCTTCCACCGAGACCAAGGATGTTGGGGCTGGCATGGACAAGGAGGTGTTGAAATCAGAGAAAACCACTCAGGACTTGAACACTAAGATGATGGCCATGATCAATAAAATGTTGGAGACATGCCGTAACACCAAGGAGGATTATACCGTGAGTGTGGATTGCAATGGAGATGCCACGGCACTAAGCGTTAACATTGATCCAGTACCCATCTTATCAGAGGTCAGTAATGAGGCTAACTCAACTCATCTTGTCAACACTAACAAGCTTAGTATGGTGACAGTGAAACCAACCAAGGGTTTGACAAAAAGCAAAAAGGAAAAGGTTGATGGTGATGTCGGTGGTATGGTCACTGATAATTGTGTCAAGTTTACCAAGGTGGATACCAAGCTCATTTTTGTGTTCAGACCATTTACAGATGTGTGTTTGACTTTGTGCCGGAGCAATCACATTGTTGTCACCAACCTTCCTGTTGTCTCTTCTGAATGTGAGGTCTGCTGCGATGATTTTGTCTCAGGGGCAGATTTCACAGCTAGACCGCAAGTAGTACCTCCCTGGAGACTGGCAGTCCCACTGGATTTTCGATTCTTGCCATGGCCAGATATATTTAATCAAGGCAGCGGAGGCGTGGTGGTGAAGCTCTTACAGCCCTGGCCACCACCTATTCAAGCAGAAGTTAAAGCTAAAGTGGAAAAACTGAATCTACATGGTCAGAAACTAAAGATTCAGATTATCGTAACAGTCTATTCGGTCCCCAAGGCTACCATAGAAGGTCTACAATTGTTGGGTGAACGGATGTTACTGGAAGAGCAACTGAAGTGTGAGGTTGTCAAGTCCAGTTGGTACAGTTTTTCAAATCTTTTAGTTGGAGATATGATTGATACTGCTCTGCCTATGCAGTCATTGGGACAGCTAGTTTCAAGCTACAATCTAACTCGATTTGAGAATGAAAATTTACTGGTTCAACAAGTTATGAGTTGGTGTCGGTTCAAATTCTCAGCTAATTATTTCTTGAGCAAGCCTTATCAATGGAGAAAATATATGGTGGATGCTCCAGCTTACCAAGGGTTTCCTTTTCAAGGAATGATAAAGCAACAAATTGATGGTGTTGATAAGATGTTGCTATACTGTCATCAAATCAGCATTGTATATTGCAGTGTTTCTGAAAATATAGTGTATGATGTGACAGGGACTCCTGTCATGCCAAGCAAATGGATCCATGTTGTAGCAGTTGGGAGGACATGGCTATTATCTGCTTTTGCCCTGATAAATTTCCTAGATGCTGGGACTGTGCAATTGGCAGTGAAGCTTGTGCATGTCAAGATTGCTGAGATGACAAGAATAAGATCTTGGGATCCAGGTATTGTCAATTTAGTTACTATAATAGCTTGCCAAATTTCTACAGAAGTGAAGAAGGGAGGGAGTGATACTCTTGATCTCAGCTCAGTTTGCAAGTACAAGAATGCTCATGATAGTATCCAAGTGGGCACAGTATCTAGCATTTCTCTATCATTGACCATATTTGTTGTCCTTCCATATAGAAAGCTTGGGACTAGTATCAAGATCCCTAACTATAATTCTGGACAAATGGAGGTGCAATGCATCCACCAGAGTGCAAGTTTTGTCACTTCTATTGGCATGGAGTCGTCTCTTGTGGTTGCATTTTATGGATCAGCTGGTGCTTACGGATTAGCTCTTGATGATCACTTGCAGCTACCCTGGGATCCTGGAGGCACTGATCTTGAGCTTCAATTGCATCAGCTTGGGGACAAGCTGATTTTCAAGGCGGGGAGAATGTTATGTAATTGGGTCGGATTGGTATGCATATTGAGCTCAGGGCTGGCTAGGCCCAATCCGCTGCGCTAA
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| Protein seq | MEWVRNNKVSEPTIRGIPYQKARWMTHSGSSDVQRLDPSIGGGFTGGACQVFGEMPSWLGAGAGAVLRVQVSQVLYPMTSEVLHQVYNGYGAVAVQVLATTHASFPGNGANVMPTKCSTLGPSYATTTSGAKSIPAATERVFPATKASLASSTSSTTMTTPAPSTETKDVGAGMDKEVLKSEKTTQDLNTKMMAMINKMLETCRNTKEDYTVSVDCNGDATALSVNIDPVPILSEVSNEANSTHLVNTNKLSMVTVKPTKGLTKSKKEKVDGDVGGMVTDNCVKFTKVDTKLIFVFRPFTDVCLTLCRSNHIVVTNLPVVSSECEVCCDDFVSGADFTARPQVVPPWRLAVPLDFRFLPWPDIFNQGSGGVVVKLLQPWPPPIQAEVKAKVEKLNLHGQKLKIQIIVTVYSVPKATIEGLQLLGERMLLEEQLKCEVVKSSWYSFSNLLVGDMIDTALPMQSLGQLVSSYNLTRFENENLLVQQVMSWCRFKFSANYFLSKPYQWRKYMVDAPAYQGFPFQGMIKQQIDGVDKMLLYCHQISIVYCSVSENIVYDVTGTPVMPSKWIHVVAVGRTWLLSAFALINFLDAGTVQLAVKLVHVKIAEMTRIRSWDPGIVNLVTIIACQISTEVKKGGSDTLDLSSVCKYKNAHDSIQVGTVSSISLSLTIFVVLPYRKLGTSIKIPNYNSGQMEVQCIHQSASFVTSIGMESSLVVAFYGSAGAYGLALDDHLQLPWDPGGTDLELQLHQLGDKLIFKAGRMLCNWVGLVCILSSGLARPNPLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g01720 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0014360 | SBH | 0.0 | 0.000000 | 0.404469 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0014540 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0014390 | SBH | 0.0 | 0.710098 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0014280 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0014190 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0201200 | RBH | 0.005288 | 0.0073 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0014010 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0213200 | RBH | 0.014948 | 0 | 0.011101 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0014560 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0014110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0014650 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0014450 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0014270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014580 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0014290 | SBH | 0.0 | 0.0 | 0.0 |
