Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0014290 | OGI:02035220 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:12780141-12784696 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacagcacagctgaggcatcaggcatcatatcaatggaagaaacagcaagacagatcacaaccttactgcatcatcactcatcagtatctaatcattcatgtctcaaacctcactcaaaacacattgcaaatttttgaaggattaccagatctgaattaccagaataccgaaccaacctgcacaaaattctacccatcctgatgttcctgcagtctcagctgttccccttgtttgattagttgctccataaaccacttacgactaagggcctcgtatgggggcagatagaaccaagtccacggcgaggagtctgatggcggctctcgcggcaggcagcggactatgccctgctcgcagcatctgccggtgtcgccgcaggggaacgtgccctcaacctgctgcacctgcgaggtcgagctccctgcgccgttgaacctcgcggagtcatccaggaagtagatgttgggagggaactggctagatttcctcatctcgacggcgcaggagcagcctcgcacgaggaagatcgtccggtctgcgagggtgtccaaggtgagtttcttccaggacggtggcttcagctccagcttgaagacgtcgaacgccaccgtggccttctccgtggagacgaacctgacgaccatgagcagctgcccgcgggattccacgaggtagcggccgagcacctcccctggccctggcatggtgggtcggggatttcggcggagctggtacttgttcacggatgacatcgtgagctcgccgtgcctgtcgttggccttgggggtgtacaccaggaggtcctccttgttgttgaggacatagaatcccccaccgagcgggccgaagaagatgtagttggcgtcctcgattgggtccttggatagctgcttctgccacattttgaaccccgagtcccacttcagcatcggcggcacacaatcgctcatgccggggcgccagaacatgatattgggcttgccggaaactatggcggcggcgtagtacggatgagcctgacatggggtataggagaggatgacggcttggatgtggttgatgaaggtggtatcagggttgttgttgcggagggatctcgggaggaggacgcgctcgccggtgcagaggttgagcagagcgggggcacgattccccgggacagagcggtcatcatgcggaatctcggcggcggcgacccaaccttcaaggtaggcgccgcagaagcgcgcgccgcgggcgttgtccggcaggcgggggccctggtgggtgcgctcgcaggggatgcagaagaaggaggtcgcggtggtggacggcatgaacagccacggttgcataggcggcagatgccgcgtagcgatggtgcgccaccgtgtgcagacaccggcgaacatggagtagtcagggaggcaaaggaggtggtggaggatgccggcgacgcactcttcggggagctccgcccacgccatgtttgcgtcggccatgggagggggaggggaggaggagtagtagtttctagtaacttttggatgggattgggaatggtgggaagaagaagaagagggcaagtgggaagattcgttgggaagggaattgctgtgattttataggcttctcgtctgaagccacgcgaatgctaatcattttcttcttgcttgccaagttttcctattgttctgcatttccattgttctacactgatctccaagcattactctgttacggtatctgcttgttctgcattaatttcagtttattgtagaagattatctttgtttatactatagtgctttccatattcaaagtaaaaaaaattcttctgttctgatctttcacaaaatttacacagctctaagatgcgttgctgtgttacgaacccactccatgtgatttagtgaatttatgcacaagcaaacaattcttcctccaacacttgatacatgagtatttggggatacaaatggaggaaatggaatcaagactgggaatcagctgtaggttgaagaagaagacatagatagagattggagaagagaagagaggtacagaggttgaagaagagagagcattagaaggaagaagtcaagttttatctgttctgttctgtactgttttcttccccatttgttggctctgctccttttgtagtggctggagtggtcggcttagcgcagcggattgggcctagccagccctgagctcaatatgcataccaatccgacccagttacataacattctccccgccttgaaaatcagcttgtccccaagctgatgcaattgaagctcaagatcagtgcctccaggatcccagggtagctgcaagtgatcatcaagagctaatccgtaagcaccagctgatccataaaatgcaaccacaagagacgactccatgccaatagaagtgacaaaacttgcactctggtggatgcattgcacctccatttgtccagaattatagttagggctcttgatactagtcccaagctttctatatggaagaacaacaaacatggtcaatgatagagaaatgctagatactgtgcccacttggatactatcatgagcattcttgtacttgcaaactgagctgagatcaagagtatcactccctcccttcttcacttctgtagaaatttggcaagctattatagtaactaaattgacaatacctggatcccaagatcttattcttgtcatctcagcaatcttgacatgcacaagcttcactgccaattgcacagtcccagcatctaggaaatttatcagggcaaaagcagataatagccatgtcctcccaactgctataacatggatccatttgcttggcatgacaggagtccctgtcacatcatacactatattttcagaaacactgcaatatacaatgctgatttgatgatagtatagcaacatcttatcaataccatcaatttgttgctttatcattccttgaaaaggaaacccttggtaagctggagcatccaccatatattttctccattgataaggcttgctcaagaaataattagctgagaatttgaaccgacaccagctcataacttgttgaaccagtaaattttcattctcaaatcgagttagattgtagcttgaaactagctgtcccaatgactgcataggcagagcagtatcaatcatatctccaactaaaagatttgaaaaattgtaccaactggacttgacaacctcacacttcagttgctcttccagtaacatccgttcacccaacaattgtagaccttctatggtagccttggggactgaatagactgttacgagaatctgaatctttagtttctgaccatgtagattcagtttttccactttagctttaacttctgcttgaataggtggtggccagggctgtaagagcttcaccaccacgcctccgttgccttgattaaatatatctggccatggcaagaatcgaaaatccagtgggactgccagtctccaaggaggtactacttgcggtctagctgtgaaatctgcccctgagacaaaatcatcgcagcagacctcacattcagaagagacaacaggaaggttggtgacaacaatgtgattgctccggcacaaagtcaaacacacatctgtaaatggtctgaacacaaaaatgagcttggtatccaccttggtaaacttgacacaattatctgtgaccataccaccgacatcaccatcaaccttttcctttttgctttttgtcaaacccttggttggtttcactgtcaccatactaagcttgttagtgttgacaagatgagttgagttagcctcattactgacctctgataagatgggtactggatcaatgttaacgctcagtgccgtggcatctccattgcaatccacactcacggtataatcctccttggtgttacggcatgtctccaacattttattgatcatggccatcatcttagtgttcaagtcctgagtggttttctctgatttcaacacctccttgtccatgccagccccaacatccttggtctcggtggaaggtgccggagtcgtcatggttgttgatgaagttgagggtgccaatgaagctttagtggctgggaacacgcgttctgttgcagctggtatgctcttggcccctgacgtggtggtggcataacttggtcccaacgtcgaatacttggtgggcatcacgttagcaccatttccagggaaagacgcgtgtgctggacatcaagcaggcaacacccatcgtaaatgttgcgttcattggtgtcagatcgagccctttctgcgtcatagcttgaccggaaccagactagcgcctcaacgccccaacaactcgtggcgagcacttgcaccgccactgctccatagccgttgtagacttgatgtagtacctcgctagtcatcgggtaaaggacttggctcacttggacacgaagagcagtgccagcaccagctcccagccagctcggcatttctccgaacacctggcaggcgcctccagtgaaaccacctccaatgcttggatctagcctctggacgtcgctgctgccactgtgtgtcat
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| CDS seq | atgacacacagtggcagcagcgacgtccagaggctagatccaagcattggaggtggtttcactggaggcgcctgccaggtgttcggagaaatgccgagctggctgggagctggtgctggcactgctcttcgtgtccaagtgagccaagtcctttacccgatgactagcgaggtactacatcaagtctacaacggctatggagcagtggcggtgcaagtgctcgccacgagttcacacgcgtctttccctggaaatggtgctaacgtgatgcccaccaagtattcgacgttgggaccaagttatgccaccaccacgtcaggggccaagagcataccagctgcaacagaacgcgtgttcccagccactaaagcttcattggcaccctcaacttcatcaacaaccatgacgactccggcaccttccaccgagaccaaggatgttggggctggcatggacaaggaggtgttgaaatcagagaaaaccactcaggacttgaacactaagatgatggccatgatcaataaaatgttggagacatgccgtaacaccaaggaggattataccgtgagtgtggattgcaatggagatgccacggcactgagcgttaacattgatccagtacccatcttatcagaggtcagtaatgaggctaactcaactcatcttgtcaacactaacaagcttagtatggtgacagtgaaaccaaccaagggtttgacaaaaagcaaaaaggaaaaggttgatggtgatgtcggtgggactcctgtcatgccaagcaaatggatccatgttatagcagttgggaggacatggctattatctgcttttgccctgataaatttcctagatgctgggactgtgcaattggcagtgaagcttgtgcatgtcaagattgctgagatgacaagaataagatcttgggatccagttactagaaactactactcctcctcccctccccctcccatggccgacgcaaacatggcgtgggcggagctccccgaagagtgcgtcgccggcatcctccaccacctcctttgcctccctgactactccatgttcgccggtgtctgcacacggtggcgcaccatcgctacgcggcatctgccgcctatgcaaccgtggctgttcatgccgtccaccaccgcgacctccttcttctgcatcccctgcgagcgcacccaccagggcccccgcctgccggacaacgcccgcggcgcgcgcttctgcggcgcctaccttgaaggttgggtcgccgccgccgagattccgcatgatgaccgctctgtcccggggaatcgtgcccccgctctgctcaacctctgcaccggcgagcgcgtcctcctcccgagatccctccgcaacaacaaccctgataccaccttcatcaaccacatccaagccgtcatcctctcctataccccatgtcaggctcatccgtactacgccgccgccatagtttccggcaagcccaatatcatgttctggcgccccggcatgagcgattgtgtgccgccgatgctgaagtgggactcggggttcaaaatgtggcagaagcagctatccaaggacccaatcgaggacgccaactacatcttcttcggcccgctcggtgggggattctatgtcctcaacaacaaggaggacctcctggtgtacacccccaaggccaacgacaggcacggcgagctcacgatgtcatccgtgaacaagtaccagctccgccgaaatccccgacccaccatgccagggccaggggaggtgctcggccgctacctcgtggaatcccgcgggcagctgctcatggtcgtcaggttcgtctccacggagaaggccacggtggcgttcgacgtcttcaagctggagctgaagccaccgtcctggaagaaactcaccttggacaccctcgcagaccggacgatcttcctcgtgcgaggctgctcctgcgccgtcgagatgaggaaatctagccagttccctcccaacatctacttcctggatgactccgcgaggttcaacggcgcagggagctcgacctcgcaggtgcagcaggttgagggcacgttcccctgcggcgacaccggcagatgctgcgagcagggcatagtccgctgcctgccgcgagagccgccatcagactcctcgccgtggacttggttctatctgcccccatacgaggcccttagtcgtaagtggtttatggagcaactaatcaaacaaggggaacagctgagactgcaggaacatcaggatgggtag
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| Protein seq | MTHSGSSDVQRLDPSIGGGFTGGACQVFGEMPSWLGAGAGTALRVQVSQVLYPMTSEVLHQVYNGYGAVAVQVLATSSHASFPGNGANVMPTKYSTLGPSYATTTSGAKSIPAATERVFPATKASLAPSTSSTTMTTPAPSTETKDVGAGMDKEVLKSEKTTQDLNTKMMAMINKMLETCRNTKEDYTVSVDCNGDATALSVNIDPVPILSEVSNEANSTHLVNTNKLSMVTVKPTKGLTKSKKEKVDGDVGGTPVMPSKWIHVIAVGRTWLLSAFALINFLDAGTVQLAVKLVHVKIAEMTRIRSWDPVTRNYYSSSPPPPMADANMAWAELPEECVAGILHHLLCLPDYSMFAGVCTRWRTIATRHLPPMQPWLFMPSTTATSFFCIPCERTHQGPRLPDNARGARFCGAYLEGWVAAAEIPHDDRSVPGNRAPALLNLCTGERVLLPRSLRNNNPDTTFINHIQAVILSYTPCQAHPYYAAAIVSGKPNIMFWRPGMSDCVPPMLKWDSGFKMWQKQLSKDPIEDANYIFFGPLGGGFYVLNNKEDLLVYTPKANDRHGELTMSSVNKYQLRRNPRPTMPGPGEVLGRYLVESRGQLLMVVRFVSTEKATVAFDVFKLELKPPSWKKLTLDTLADRTIFLVRGCSCAVEMRKSSQFPPNIYFLDDSARFNGAGSSTSQVQQVEGTFPCGDTGRCCEQGIVRCLPREPPSDSSPWTWFYLPPYEALSRKWFMEQLIKQGEQLRLQEHQDG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0014290 | OsNaBo_02g0014290.01 | Chr02 | 12780141 | 12784696 | - | NAM | ||
| CDS seq | atgacacacagtggcagcagcgacgtccagaggctagatccaagcattggaggtggtttcactggaggcgcctgccaggtgttcggagaaatgccgagctggctgggagctggtgctggcactgctcttcgtgtccaagtgagccaagtcctttacccgatgactagcgaggtactacatcaagtctacaacggctatggagcagtggcggtgcaagtgctcgccacgagttcacacgcgtctttccctggaaatggtgctaacgtgatgcccaccaagtattcgacgttgggaccaagttatgccaccaccacgtcaggggccaagagcataccagctgcaacagaacgcgtgttcccagccactaaagcttcattggcaccctcaacttcatcaacaaccatgacgactccggcaccttccaccgagaccaaggatgttggggctggcatggacaaggaggtgttgaaatcagagaaaaccactcaggacttgaacactaagatgatggccatgatcaataaaatgttggagacatgccgtaacaccaaggaggattataccgtgagtgtggattgcaatggagatgccacggcactgagcgttaacattgatccagtacccatcttatcagaggtcagtaatgaggctaactcaactcatcttgtcaacactaacaagcttagtatggtgacagtgaaaccaaccaagggtttgacaaaaagcaaaaaggaaaaggttgatggtgatgtcggtgggactcctgtcatgccaagcaaatggatccatgttatagcagttgggaggacatggctattatctgcttttgccctgataaatttcctagatgctgggactgtgcaattggcagtgaagcttgtgcatgtcaagattgctgagatgacaagaataagatcttgggatccagttactagaaactactactcctcctcccctccccctcccatggccgacgcaaacatggcgtgggcggagctccccgaagagtgcgtcgccggcatcctccaccacctcctttgcctccctgactactccatgttcgccggtgtctgcacacggtggcgcaccatcgctacgcggcatctgccgcctatgcaaccgtggctgttcatgccgtccaccaccgcgacctccttcttctgcatcccctgcgagcgcacccaccagggcccccgcctgccggacaacgcccgcggcgcgcgcttctgcggcgcctaccttgaaggttgggtcgccgccgccgagattccgcatgatgaccgctctgtcccggggaatcgtgcccccgctctgctcaacctctgcaccggcgagcgcgtcctcctcccgagatccctccgcaacaacaaccctgataccaccttcatcaaccacatccaagccgtcatcctctcctataccccatgtcaggctcatccgtactacgccgccgccatagtttccggcaagcccaatatcatgttctggcgccccggcatgagcgattgtgtgccgccgatgctgaagtgggactcggggttcaaaatgtggcagaagcagctatccaaggacccaatcgaggacgccaactacatcttcttcggcccgctcggtgggggattctatgtcctcaacaacaaggaggacctcctggtgtacacccccaaggccaacgacaggcacggcgagctcacgatgtcatccgtgaacaagtaccagctccgccgaaatccccgacccaccatgccagggccaggggaggtgctcggccgctacctcgtggaatcccgcgggcagctgctcatggtcgtcaggttcgtctccacggagaaggccacggtggcgttcgacgtcttcaagctggagctgaagccaccgtcctggaagaaactcaccttggacaccctcgcagaccggacgatcttcctcgtgcgaggctgctcctgcgccgtcgagatgaggaaatctagccagttccctcccaacatctacttcctggatgactccgcgaggttcaacggcgcagggagctcgacctcgcaggtgcagcaggttgagggcacgttcccctgcggcgacaccggcagatgctgcgagcagggcatagtccgctgcctgccgcgagagccgccatcagactcctcgccgtggacttggttctatctgcccccatacgaggcccttagtcgtaagtggtttatggagcaactaatcaaacaaggggaacagctgagactgcaggaacatcaggatgggtag
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| Protein seq | MTHSGSSDVQRLDPSIGGGFTGGACQVFGEMPSWLGAGAGTALRVQVSQVLYPMTSEVLHQVYNGYGAVAVQVLATSSHASFPGNGANVMPTKYSTLGPSYATTTSGAKSIPAATERVFPATKASLAPSTSSTTMTTPAPSTETKDVGAGMDKEVLKSEKTTQDLNTKMMAMINKMLETCRNTKEDYTVSVDCNGDATALSVNIDPVPILSEVSNEANSTHLVNTNKLSMVTVKPTKGLTKSKKEKVDGDVGGTPVMPSKWIHVIAVGRTWLLSAFALINFLDAGTVQLAVKLVHVKIAEMTRIRSWDPVTRNYYSSSPPPPMADANMAWAELPEECVAGILHHLLCLPDYSMFAGVCTRWRTIATRHLPPMQPWLFMPSTTATSFFCIPCERTHQGPRLPDNARGARFCGAYLEGWVAAAEIPHDDRSVPGNRAPALLNLCTGERVLLPRSLRNNNPDTTFINHIQAVILSYTPCQAHPYYAAAIVSGKPNIMFWRPGMSDCVPPMLKWDSGFKMWQKQLSKDPIEDANYIFFGPLGGGFYVLNNKEDLLVYTPKANDRHGELTMSSVNKYQLRRNPRPTMPGPGEVLGRYLVESRGQLLMVVRFVSTEKATVAFDVFKLELKPPSWKKLTLDTLADRTIFLVRGCSCAVEMRKSSQFPPNIYFLDDSARFNGAGSSTSQVQQVEGTFPCGDTGRCCEQGIVRCLPREPPSDSSPWTWFYLPPYEALSRKWFMEQLIKQGEQLRLQEHQDG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0318200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g21310 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0318200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0014360 | RBH | 0.0 | 0.000000 | 0.404469 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0014540 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0014390 | RBH | 0.0 | 0.710098 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0014280 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0014180 | SBH | 1.593669 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0201100 | SBH | 0.1286185 | 0.487323 | 0.04307 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0014000 | SBH | 0.062096 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0213100 | RBH | 0.0360265 | 0.0990135 | 0.4591895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0014550 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0014100 | SBH | 0.117450 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0014640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0014440 | SBH | 0.118690 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0014260 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014570 | RBH | 0.151099 | 0.572715 | 0.228488 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0014230 | RBH | 0.386851 | 1.485496 | 0.000000 |
