Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g16460 | OGI:02026600 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:9400984-9402639 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGATAAGGATGTGGCGGTGATTGCCGGTAAGGAGGAGGTGGGTGATGAAGCGACGGCAGCGGCGGCGTTGATTGCCGACAAGGAGGAGGTGGGTGATGAAGCGACGGCGTCGGCGACTGTGAATGGCCCTGACAAGGGTACCCGTCGTAAAGTGCGGGTGATGGTGAGCGTAGTGCACGAGGTGAAGGCGGCGGAGAAGGTCGGCGAGGGGCATCCTCCGGTGCCACAAGGCAAGATCCGGCTCTCGCAGCAGACCATCGATGCGATCCTCGCCACGAAGACGATGCATTATTCTACAGATGCCCTGGAATACTACCGGATCAAGAAAGATTATGAGATGCTCCGTCTCATGCACAGCTGCATGAGGACGCATGACGAGTTTCAGAAACGCATCGTCAAGCGTAAGGCATGGATCCGTAATGAGCTGGAGAAGAAAGGGTACGTTGATATCGACGAGAGTAACGCTGCAACCTTCACTCCTATACATTGGAGGGAGGAGCTTGTTGTTAGGTTGTCTATTGGATCACCTAGGTTTAGATCTAGTCGGGTGGTTCTATTTGCGATGGATGATTGAACAACAATAGAGAATAAGGGAAAGGGTTTAGGGATGTGACCGGTTGACGCGTTGGATGAAGAGGAAGTCCCAGCCATCGTCGTTGTCGTCGCTCTGCTTGACGTGGGCGGCGGCGGCGATGGCGGTCGTGACGGCGACGGTGCTGCGCGGCAGTGGTGGTCGTAGGGGATCCCGGCGAGGTCGTGGCGCGGCGGTGGAGTCTTCCCGTCACTGGCTGCGCCCCCTCGATCGGTTAGGGTTTATGGGGTGGAGTGGCGGCGGCGGCGACGAACCTCGTTCCTTGTGTCGTTATGCCGTCCCGTCCTCCACCCCTCTTTATATGGCACAGTGTGACGGGGGCCCACCAGCCATTGGGCTGGGCGCCCCCGATCAGGGCGCGGGTCAAGGCCCCCTTGAGCCCAACGGCTCAAGGGGAGGGAGATCCATCTAACATTCTCCCCCTTGATCTCACTATTTCCTTTAGCTTTTTCTATTCCATCACAGATTTACATATAGAGCATGTTTCATCGTCACGGTTAATTACCGATGGATTCGACAGCCACTATACACATCTCTATTCAGAAACAGATACTTTAACTTTTGGGCCCTATAGTCCAGGATTCATAAGGCTTCCCTTAAAACCCATGCATGCTACATGTTCCTTGAACATGTTGGGAGGTAGGCCTTTCATGAGCGGATCCGCGAGCATCCTTTCTGTTCTTATGTGCTCGAGACTGATTGTTTGATCCCGGACTTTGTCTTTCACAACATAGTACTTTATGTCAATGTGTTTGGCAGCACCACTTGACTAATTGTTGTGAGAGTACATTACTGTGGATTCTTTATCGCAGTATAACTTTAGTGGTTTCTCAATACTATCAACCACCTTTAAAACCGGGTATGAACTTCATTAGCCAGTTCACCTGCCCCGTAGCCTCATGGCATGCTATAAACTCGGCATACATGGTAGACCCTGCAGTGGTAGTCTGTTTTGAGCTTTTCCATGAAATAGCTCCTGCTGCCAGGGTAAACATGTATCCCGATGTTAACTTTGTATTATCTTTTGCAAAGTCAGAATCCGAATACCCCACTATCTAG
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| CDS seq | ATGGCTGATAAGGATGTGGCGGTGATTGCCGGTAAGGAGGAGGTGGGTGATGAAGCGACGGCAGCGGCGGCGTTGATTGCCGACAAGGAGGAGGTGGGTGATGAAGCGACGGCGTCGGCGACTGTGAATGGCCCTGACAAGGGTACCCGTCGTAAAGTGCGGGTGATGGTGAGCGTAGTGCACGAGGTGAAGGCGGCGGAGAAGGTCGGCGAGGGGCATCCTCCGGTGCCACAAGGCAAGATCCGGCTCTCGCAGCAGACCATCGATGCGATCCTCGCCACGAAGACGATGCATTATTCTACAGATGCCCTGGAATACTACCGGATCAAGAAAGATTATGAGATGCTCCGTCTCATGCACAGCTGCATGAGGACGCATGACGAGTTTCAGAAACGCATCGTCAAGCGTAAGGCATGGATCCGTAATGAGCTGGAGAAGAAAGGTATAACTTTAGTGGTTTCTCAATACTATCAACCACCTTTAAAACCGGGTATGAACTTCATTAGCCAGTTCACCTGCCCCGTAGCCTCATGGCATGCTATAAACTCGGCATACATGGTAGACCCTGCAGTGGTAGTCTGTTTTGAGCTTTTCCATGAAATAGCTCCTGCTGCCAGGGTAAACATGTATCCCGATGTTAACTTTGTATTATCTTTTGCAAAGTCAGAATCCGAATACCCCACTATCTAG
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| Protein seq | MADKDVAVIAGKEEVGDEATAAAALIADKEEVGDEATASATVNGPDKGTRRKVRVMVSVVHEVKAAEKVGEGHPPVPQGKIRLSQQTIDAILATKTMHYSTDALEYYRIKKDYEMLRLMHSCMRTHDEFQKRIVKRKAWIRNELEKKGITLVVSQYYQPPLKPGMNFISQFTCPVASWHAINSAYMVDPAVVVCFELFHEIAPAARVNMYPDVNFVLSFAKSESEYPTI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g16460 | LOC_Os02g16460.1 | Chr02 | 9400984 | 9402639 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTGATAAGGATGTGGCGGTGATTGCCGGTAAGGAGGAGGTGGGTGATGAAGCGACGGCAGCGGCGGCGTTGATTGCCGACAAGGAGGAGGTGGGTGATGAAGCGACGGCGTCGGCGACTGTGAATGGCCCTGACAAGGGTACCCGTCGTAAAGTGCGGGTGATGGTGAGCGTAGTGCACGAGGTGAAGGCGGCGGAGAAGGTCGGCGAGGGGCATCCTCCGGTGCCACAAGGCAAGATCCGGCTCTCGCAGCAGACCATCGATGCGATCCTCGCCACGAAGACGATGCATTATTCTACAGATGCCCTGGAATACTACCGGATCAAGAAAGATTATGAGATGCTCCGTCTCATGCACAGCTGCATGAGGACGCATGACGAGTTTCAGAAACGCATCGTCAAGCGTAAGGCATGGATCCGTAATGAGCTGGAGAAGAAAGGTATAACTTTAGTGGTTTCTCAATACTATCAACCACCTTTAAAACCGGGTATGAACTTCATTAGCCAGTTCACCTGCCCCGTAGCCTCATGGCATGCTATAAACTCGGCATACATGGTAGACCCTGCAGTGGTAGTCTGTTTTGAGCTTTTCCATGAAATAGCTCCTGCTGCCAGGGTAAACATGTATCCCGATGTTAACTTTGTATTATCTTTTGCAAAGTCAGAATCCGAATACCCCACTATCTAG
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| Protein seq | MADKDVAVIAGKEEVGDEATAAAALIADKEEVGDEATASATVNGPDKGTRRKVRVMVSVVHEVKAAEKVGEGHPPVPQGKIRLSQQTIDAILATKTMHYSTDALEYYRIKKDYEMLRLMHSCMRTHDEFQKRIVKRKAWIRNELEKKGITLVVSQYYQPPLKPGMNFISQFTCPVASWHAINSAYMVDPAVVVCFELFHEIAPAARVNMYPDVNFVLSFAKSESEYPTI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0011480 | RBH | 0.083350 | 0.000000 | 1.681662 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011610 | RBH | 0.032613 | 0.000000 | 1.263740 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011460 | RBH | 0.383558 | 0.0 | 1.801838 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0011320 | RBH | 0.000000 | 0.019535 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0149700 | RBH | 0.00341 | 0.0234315 | 0.0116095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011130 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0158500 | RBH | 0.204809 | 0.039704 | 1.234667 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011610 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0011550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0011230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011410 | RBH | 0.0 | 0.0 | 0.0 |
