Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g04090 | OGI:02006220 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:1780356-1782004 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCCAAGGAACAAAGCTCGGTAGGCAGATTTTGAAGTGTATTTGCCTGAGCTTTCCCACTTCCAGGAGAGTGAGTCGGGCTCTGCGGAAGAACAATCAACTGACTGAATCAGCGACCAAAGTTTGAGGTATTCGAGTATTGCCTGAGTCCCAAGCGCGCCACTTATGTCCTTGATCCATCTACGGTTAGACAACGCTTCAGCCACCGTCCGGCGCTTCCGAATACGAGTAGAGACATGATCGTAGATGGAGAGTGCAATAGCTCGGATGGTTCCTCCTTGCAACCAATTGTCCTCCCAGAAAAGGATTGTTTGCCCGTTACCTAGCTGACAGACGGTGGAGGCGGCGACAAGGTGAAGTTCTTTCTGTGAGCAAGGGATTTCCAATCCCTGCCAAGGCTTGGTCAGAGAGGTCCTTTGCATCCACGTCCAGCGGGAACGTAGTGCAATGCCCATGAGCTTCAAGTTTGGCACACCAAGACCTCCATAATCCTTGGGGGAGCATACTTTGGTCCAGGCTACCCGGCAGCATCCACCATTCACTTGCGCCTTACCCGCCCAAAGAAAACCACGCCGTACCTTATCAATACCTTTGATCACCCACTTGGGTGCATCAATTGCGACCAATAGATAGATTGGTATGGCGCTCAAGACAGCATTGACCATGGTTACACGACCGATCGACGACATCTGATTAGATTTCCATGTGGGCAGCCATCGGGCAACCTTGTCAACAAGAGGCTGTAGGTCCTCTTTTTTCAGCTTGAAGATGAATAGCATGCACTCACATGAAAGATCTCATAGTTGTTGATGCATTTTCATAAATAGAATGTGCATCTGGAGAGCTAGATAATTTAAATCAAATGAATTTTGATCAACGAATTAGAGGACCTACTCCCGGTAAAAAAAAATATTAGAGGACTTACTGGAATACGGTTGTCTGAATTATCAAACACTATCTCAACGAAAGCCGAAAGAACTGAGATGTCAGCACCTTCCTGAAATGGTTATTGTTATCAAATAGCAAACACCTATCTCAACTAAATCAAAGAGAGAGGATGCGTACATGAAGAAGGGCTCCCCTGTCTTCACTGCGCAGGTTCTGAAACATGTCACTAAGGACAAACCGTATAGCTGGAGCATTAGAATGCCCAAGTTAGGAGAAAAGTATCACATAAGCATAAGAATAATAACCTACTAGCTAGCAACATCACATATCTAAAAAATATTACCATGGAAGAAGTTTGATTTGCCAGATCCATTTGCACCGACTGTGATAAACATGCAGATTTATGTTAGTTTGTATACAATTAACGCATACAAAGATTACTATAGTCATCAAATATTGCAATTATCTCCCCTGCACCCCCAAGAAAACAAGGCAAGTGCAGGAAACTGCAGGACAATCCGAACAGCGCCTTAAACTAGCCATGCACAAGCTGGCAAAAACTCATGGACATGTTGGTTAGATGGGGAGGAAGAAATTACCAACGACATTAACTTTTGGGCTGAAAGGTTCTGTTGAGATCTCCTCCCTGTAGCTCTTAAATCCTTCTACCACAACCTGCACAGACAGACAGCTTCTGAGTCGACACGGACCAACATGTCATCAAAATCAGAACAGCAGAACATACCTTCTTTATATACAT
More
|
||||||||||
| CDS seq | ATGTATATAAAGAAGGTTGTGGTAGAAGGATTTAAGAGCTACAGGGAGGAGATCTCAACAGAACCTTTCAGCCCAAAAGTTAATGTCGTTGTCGGTGCAAATGGATCTGGCAAATCAAACTTCTTCCATGCTATACGGTTTGTCCTTAGTGACATGTTTCAGAACCTGCGCAGTGAAGACAGGGGAGCCCTTCTTCATGAAGGTGCTGACATCTCAGTTCTTTCGGCTTTCGTTGAGATAGTGTTTGATAATTCAGACAACCGTATTCCACTGAAAAAAGAGGACCTACAGCCTCTTGTTGACAAGGTTGCCCGATGGCTGCCCACATGGAAATCTAATCAGATGTCGTCGATCGGTCGTGTAACCATGGTCAATGCTGTCTTGAGCGCCATACCAATCTATCTATTGGTCGCAATTGATGCACCCAAGTGGGTGATCAAAGGTATTGATAAGGTACGGCGTGGTTTTCTTTGGGCGGGTAAGGCGCAAGTGAATGGTGGATGCTGCCGGGTAGCCTGGACCAAAGTATGCTCCCCCAAGGATTATGGAGGTCTTGGTGTGCCAAACTTGAAGCTCATGGGCATTGCACTACGTTCCCGCTGGACGTGGATGCAAAGGACCTCTCTGACCAAGCCTTGGCAGGGATTGGAAATCCCTTGCTCACAGAAAGAACTTCACCTTGTCGCCGCCTCCACCGTCTGTCAGCTAGGTAACGGGCAAACAATCCTTTTCTGGGAGGACAATTGGTTGCAAGGAGGAACCATCCGAGCTATTGCACTCTCCATCTACGATCATGTCTCTACTCGTATTCGGAAGCGCCGGACGGTGGCTGAAGCGTTGTCTAACCGTAGATGGATCAAGGACATAAGTGGCGCGCTTGGGACTCAGGCAATACTCGAATACCTCAAACTTTGGTCGCTGATTCAGTCAGTTGATTGTTCTTCCGCAGAGCCCGACTCACTCTCCTGGAAGTGGGAAAGCTCAGGCAAATACACTTCAAAATCTGCCTACCGAGCTTTGTTCCTTGGGTGA
More
|
||||||||||
| Protein seq | MYIKKVVVEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSEDRGALLHEGADISVLSAFVEIVFDNSDNRIPLKKEDLQPLVDKVARWLPTWKSNQMSSIGRVTMVNAVLSAIPIYLLVAIDAPKWVIKGIDKVRRGFLWAGKAQVNGGCCRVAWTKVCSPKDYGGLGVPNLKLMGIALRSRWTWMQRTSLTKPWQGLEIPCSQKELHLVAASTVCQLGNGQTILFWEDNWLQGGTIRAIALSIYDHVSTRIRKRRTVAEALSNRRWIKDISGALGTQAILEYLKLWSLIQSVDCSSAEPDSLSWKWESSGKYTSKSAYRALFLG |
||||||||||
| Function | Structural maintenance of chromosomes protein 3 [UniProtKB/Swiss-Prot:Q56YN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g04090 | LOC_Os02g04090.1 | Chr02 | 1780356 | 1782004 | - | MSU_osa1r7 | ||
| CDS seq | ATGTATATAAAGAAGGTTGTGGTAGAAGGATTTAAGAGCTACAGGGAGGAGATCTCAACAGAACCTTTCAGCCCAAAAGTTAATGTCGTTGTCGGTGCAAATGGATCTGGCAAATCAAACTTCTTCCATGCTATACGGTTTGTCCTTAGTGACATGTTTCAGAACCTGCGCAGTGAAGACAGGGGAGCCCTTCTTCATGAAGGTGCTGACATCTCAGTTCTTTCGGCTTTCGTTGAGATAGTGTTTGATAATTCAGACAACCGTATTCCACTGAAAAAAGAGGACCTACAGCCTCTTGTTGACAAGGTTGCCCGATGGCTGCCCACATGGAAATCTAATCAGATGTCGTCGATCGGTCGTGTAACCATGGTCAATGCTGTCTTGAGCGCCATACCAATCTATCTATTGGTCGCAATTGATGCACCCAAGTGGGTGATCAAAGGTATTGATAAGGTACGGCGTGGTTTTCTTTGGGCGGGTAAGGCGCAAGTGAATGGTGGATGCTGCCGGGTAGCCTGGACCAAAGTATGCTCCCCCAAGGATTATGGAGGTCTTGGTGTGCCAAACTTGAAGCTCATGGGCATTGCACTACGTTCCCGCTGGACGTGGATGCAAAGGACCTCTCTGACCAAGCCTTGGCAGGGATTGGAAATCCCTTGCTCACAGAAAGAACTTCACCTTGTCGCCGCCTCCACCGTCTGTCAGCTAGGTAACGGGCAAACAATCCTTTTCTGGGAGGACAATTGGTTGCAAGGAGGAACCATCCGAGCTATTGCACTCTCCATCTACGATCATGTCTCTACTCGTATTCGGAAGCGCCGGACGGTGGCTGAAGCGTTGTCTAACCGTAGATGGATCAAGGACATAAGTGGCGCGCTTGGGACTCAGGCAATACTCGAATACCTCAAACTTTGGTCGCTGATTCAGTCAGTTGATTGTTCTTCCGCAGAGCCCGACTCACTCTCCTGGAAGTGGGAAAGCTCAGGCAAATACACTTCAAAATCTGCCTACCGAGCTTTGTTCCTTGGGTGA
More
|
|||||||
| Protein seq | MYIKKVVVEGFKSYREEISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSEDRGALLHEGADISVLSAFVEIVFDNSDNRIPLKKEDLQPLVDKVARWLPTWKSNQMSSIGRVTMVNAVLSAIPIYLLVAIDAPKWVIKGIDKVRRGFLWAGKAQVNGGCCRVAWTKVCSPKDYGGLGVPNLKLMGIALRSRWTWMQRTSLTKPWQGLEIPCSQKELHLVAASTVCQLGNGQTILFWEDNWLQGGTIRAIALSIYDHVSTRIRKRRTVAEALSNRRWIKDISGALGTQAILEYLKLWSLIQSVDCSSAEPDSLSWKWESSGKYTSKSAYRALFLG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0118800 | SBH | 0.0 | 0.0 | 0.356511 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43780 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0118800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0002630 | SBH | 3.070608 | 19.482769 | 25.104746 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0002710 | SBH | 0.836289 | 4.726335 | 9.587358 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002650 | SBH | 7.866574 | 12.625457 | 32.548679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0002620 | SBH | 0.957406 | 0.731705 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0002650 | SBH | 10.063731 | 24.608522 | 48.732533 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0048400 | SBH | 0.017377 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002560 | SBH | 1.340237 | 1.271107 | 3.703326 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0031000 | SBH | 0.004064 | 0 | 0.795915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0002630 | SBH | 0.866992 | 0.291445 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002560 | SBH | 1.725261 | 27.202848 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0002630 | SBH | 27.053274 | 37.464893 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0002720 | SBH | 4.257902 | 2.514659 | 4.156778 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0002670 | SBH | 1.651868 | 6.465827 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G002660 | SBH | 1.341111 | 4.911255 | 9.287803 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0002610 | SBH | 5.543172 | 36.460846 | 24.847034 |
