Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g73070 | OGI:01124480 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:42392184-42395736 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCAATAGCATTCATGTTCAGATGTATCGAGGCGCAATTGAAGTTCTGAAACCTCTCATCCATGAAGGGAAGATCTACTACATTGAGTCGTTCACTGTCAAAGATGCAAACAGGACTTATAGACCAGTTTCAAATGACTTCATGATTTTATTCAGTAAATGGACAACCTTAGAAGAATGCATTGACATCCCAGCTGATTTCCCTACCATAACATTTTCATTGACACATTTCCAAGAAATCCCCTCTCTTGTTGGTAAAAACATATTCTATGTTGGTATGATATATTACTATAATATTTTCATTTATGTATCTGTACATTGCCTTATAAGACTGATTTATTCTATTTTCATGTGCAAACAGATATTATGGGCGTCATTACTGAGATCAGTTCCACATCTATCGTGCGTCCAAGGTCAAGGGATGCTGATAGTTTAAAAAGAACATTGCAGATCTGTGATGCAAGGTTAGTTATGTAAAACAGAATAATTTTCATTTAAATAAGCTTTGCATTATGTTATAAACTAATATTTACACTAATTTTCATTTAAATAGCAGTTCGATGAAGTGTCAATCTTTTATTTTATATTCCAATTATAGCTACACTAATTTTACTGTTAATGCAAAACACAGCAACTCAACACTGCCTGTCACACTGTGGGGAGATCGATCAACTGCTTTTGATGCAGAGAAAATATATAAGGATGGCCAAACTAAACCCCAGGTTGTCGTGTTTGTTGGAACACTTGTCAGAGATTATGCAGGGATAGGTAAATTTCCCTATGCATACTAAATTGCTAATTACTATATATTGCATGCAATGACTACAATCTGAATCTCTAGCTCATTGTATACAGGCTTAACAATAACTGGTAGCTCACCATGCAAATGGTATATCAATCTGGACATACCTGACGTGCTCAAATTGAAAGAAAGGTACTATTATCACCTATTTTTTTCATATATCAGGTTCATTTGCAGTGCTTTAATTCTCGCTGGCTCTAAAACATAGATTAAAAACTAGCCATTGCTTTTCTTTACAGCTTCAGTGTCAACTTCCAGCCAATCAAATGGGTTGAAAATGCTGCTCCTGCATTCAACCAAGACACTCCAGAGGAAAAAACCATTAAAGAAATTCTAAAACTAAATCCGCACAAATATAAGGTCTATTCTACTCCATGATTTTTTATATGCATTTCATACTTTTGCTTTGTTTTGTATAACCGACAATTCTCTTTCTCTACAGCGAGCACGTTTTATTGTCAATGTTACTATCAAGAGCATACATGATGAAAACTGCTGGTGGTACAATTCATGTGACCGATGCTGCAGAACTTCAAAGCCATATGGTTCTACCTATAGATGCTCTAGCTGTTGTTATATAGGAATGCCAGTGCCAAGGTTAGAAAAACACCGCACACAATATTCTACACATTTATGAATTCCCAATACAAATTGTAATGACCATATATATTGTACACATACAGATACAAAGTTGTGCTCACTACCGCAGACAACACTTCTGAAGCTGCATTTGTCCTCTTCGGACGAATTGCACATCGCCTAATACACAGACCAGTGGAGTCTCTAATCGAAGAAAATCCACCTGACTTTATCCCAGCTGAGATCCAAGCTCTTGTAGATCAAGCCTTTGTATGGAATGTCAGCTTCACTGAACACACAGTTAAACGGAATCAAGAATCCTTACAGGTCAATAGCATTGTATCATCTGGTGCCCCAAAACAGCACTTCCTGCCTATCTCACCGTCTGCTTCAGGACGCACCTCAACTATCGTACCACTGAGCCCTGGCACTTCACTCCAAACACCACCCGCAGCAAGCGAAAGCAGTATTGAATCACAGTCATCAACCAGAGGAAAGCAAAGTGCATCTCTACAGCCAAGTCTATCAACACCAACAAAATATGTTGTTAGCGCTGCAGCAGATGACACACCAACTAGCAAGTCCAACCCCTCAGGATCCACCAAAAAGAAATATGTTGTCTTAGCATATCCTATGCAATCTCAAACAATGCAGCCTTCCATTGATGATAAGGTTAGTATTCCACCAGTTATACTAATATTCAGCCTATTTTCAGCACTACCTTACAAGCAATCTAATCTCCTACTTAATTTTGCAAGGCCACAAAGCCAAAGAGTGGACAGAAAACTTTGGAACATCCATCTCTTCCTGCAGCTGGACCATCTGAATCTGAATCTGAACATAAGGTACTGTCACATCTCTTTGCTTCCATATAACATATTAGATACTAACACATTTATCTATCTTATAAGATCAAAGGAACTTTTGTCAATACACCTGATGATCCACCTATTAGCCCTTCTGTGCCTAGCAAAAGTGCAAGCAAAAAAAGGTACCTATGGACTGCTTGCCTACAGCGCATCAGTGATAGATGCTTACAATATTGGTAATTTAACTGACTGTTATAACCTAATATTACACAGGACCAACACTATAGCTTCAGTTCCAGCTCCACCTGCTAAGAAGCTATTCAAAGAACATTCCCAGCACACAAAGGATCAAAGGTAATCCTCCTATTTCTTGACAGTACCTAAGCATTTTGACAGCCATAATACAAAAGCAATATATAGCTATAGACAAGCTTTAGGCTCTAATTTTTTTTTCCATGCAGTGAATGAGATGCTTGTGTCCAGCCATCCAACAGATATTTTGGGTGTTTGTACAAAGCCTATGTACATGCTAGAAGAAAGGAGGCATCCAAAATAAAGCTACAAAGTTAAAAGCAAGACTCTTTTGCTGAAGACCTACATCCTAATATTAATGTATATAAGTGGTCATGCTGCTATCACCTTTGCTAGAACATATGCTATGTATTTACTAATAGAAGTACTGCGTCCTACATGGAACATTAGGCAACTATGACACATATCTAGCTATCAACCCTCTATCCTGCCAGCTACATAATTGCAATGAAATCAGGTTTGCAGGCCACTGCTATATGAAATTTAGCATGCACTTCTGCCATCATGCTTGCTTCTTAAAATTTGGTGTGCATCTTCATTTATCTAGACACATAAATTTCATTGTTTCATGCCCACCTGTGTTTACTTTTAATCCATGATCTACAGTTCATCCGTGCTCAATACCAGAAGAAGATAAGGAAGCGAAAGTAAATGTTCCATCTTTATGTTTTAGTGCTATGTTCCCCCAAATTTGCACTGCTCATGATTTCATACTTTTACTATTGAAATTTGGTTCTGTTGATCAATATGATGTATTGTTGATATTCTGCAAAAAATTCAATTTTCATTTTATATGTACATCATAGATAGAACAAGATATATGCCAGTGATCTAATGTACAAATATTTAGTTAAAAACTTCATAATGCATCTCAGTTAGCATTTTAAATTTTAATAGGATTGATCTTCTGTTGTTGAATGTTCTTTCTTTCTTCTCTGGCAAATCTGAAACAATTATTGCAATGCATCAACCTAATAAGTCTTTCGTACAACAAAATAGCATGCTGAAATTAGTGTATTATAGGATGGTCGGGCCTAGAAACTTGGAATCTT
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| CDS seq | ATGTATCGAGGCGCAATTGAAGTTCTGAAACCTCTCATCCATGAAGGGAAGATCTACTACATTGAGTCGTTCACTGTCAAAGATGCAAACAGGACTTATAGACCAGTTTCAAATGACTTCATGATTTTATTCAGTAAATGGACAACCTTAGAAGAATGCATTGACATCCCAGCTGATTTCCCTACCATAACATTTTCATTGACACATTTCCAAGAAATCCCCTCTCTTGTTGGTAAAAACATATTCTATGTTGATATTATGGGCGTCATTACTGAGATCAGTTCCACATCTATCGTGCGTCCAAGGTCAAGGGATGCTGATAGTTTAAAAAGAACATTGCAGATCTGTGATGCAAGCAACTCAACACTGCCTGTCACACTGTGGGGAGATCGATCAACTGCTTTTGATGCAGAGAAAATATATAAGGATGGCCAAACTAAACCCCAGGTTGTCGTGTTTGTTGGAACACTTGTCAGAGATTATGCAGGGATAGGCTTAACAATAACTGGTAGCTCACCATGCAAATGGTATATCAATCTGGACATACCTGACGTGCTCAAATTGAAAGAAAGCTTCAGTGTCAACTTCCAGCCAATCAAATGGGTTGAAAATGCTGCTCCTGCATTCAACCAAGACACTCCAGAGGAAAAAACCATTAAAGAAATTCTAAAACTAAATCCGCACAAATATAAGCGAGCACGTTTTATTGTCAATGTTACTATCAAGAGCATACATGATGAAAACTGCTGGTGGTACAATTCATGTGACCGATGCTGCAGAACTTCAAAGCCATATGGTTCTACCTATAGATGCTCTAGCTGTTGTTATATAGGAATGCCAGTGCCAAGATACAAAGTTGTGCTCACTACCGCAGACAACACTTCTGAAGCTGCATTTGTCCTCTTCGGACGAATTGCACATCGCCTAATACACAGACCAGTGGAGTCTCTAATCGAAGAAAATCCACCTGACTTTATCCCAGCTGAGATCCAAGCTCTTGTAGATCAAGCCTTTGTATGGAATGTCAGCTTCACTGAACACACAGTTAAACGGAATCAAGAATCCTTACAGGTCAATAGCATTGTATCATCTGGTGCCCCAAAACAGCACTTCCTGCCTATCTCACCGTCTGCTTCAGGACGCACCTCAACTATCGTACCACTGAGCCCTGGCACTTCACTCCAAACACCACCCGCAGCAAGCGAAAGCAGTATTGAATCACAGTCATCAACCAGAGGAAAGCAAAGTGCATCTCTACAGCCAAGTCTATCAACACCAACAAAATATGTTGTTAGCGCTGCAGCAGATGACACACCAACTAGCAAGTCCAACCCCTCAGGATCCACCAAAAAGAAATATGTTGTCTTAGCATATCCTATGCAATCTCAAACAATGCAGCCTTCCATTGATGATAAGGTTAGTATTCCACCAGTTATACTAATATTCAGCCTATTTTCAGCACTACCTTACAAGCAATCTAATCTCCTACTTAATTTTGCAAGGCCACAAAGCCAAAGAGTGGACAGAAAACTTTGGAACATCCATCTCTTCCTGCAGCTGGACCATCTGAATCTGAATCTGAACATAAGGTACTGTCACATCTCTTTGCTTCCATATAACATATTAGATACTAACACATTTATCTATCTTATAAGATCAAAGGAACTTTTGTCAATACACCTGATGATCCACCTATTAGCCCTTCTGTGCCTAGCAAAAGTGCAAGCAAAAAAAGGTACCTATGGACTGCTTGCCTACAGCGCATCAGTGATAGATGCTTACAATATTGGTAATTTAACTGACTGTTATAACCTAATATTACACAGGACCAACACTATAGCTTCAGTTCCAGCTCCACCTGCTAAGAAGCTATTCAAAGAACATTCCCAGCACACAAAGGATCAAAGGTAA
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| Protein seq | MYRGAIEVLKPLIHEGKIYYIESFTVKDANRTYRPVSNDFMILFSKWTTLEECIDIPADFPTITFSLTHFQEIPSLVGKNIFYVDIMGVITEISSTSIVRPRSRDADSLKRTLQICDASNSTLPVTLWGDRSTAFDAEKIYKDGQTKPQVVVFVGTLVRDYAGIGLTITGSSPCKWYINLDIPDVLKLKESFSVNFQPIKWVENAAPAFNQDTPEEKTIKEILKLNPHKYKRARFIVNVTIKSIHDENCWWYNSCDRCCRTSKPYGSTYRCSSCCYIGMPVPRYKVVLTTADNTSEAAFVLFGRIAHRLIHRPVESLIEENPPDFIPAEIQALVDQAFVWNVSFTEHTVKRNQESLQVNSIVSSGAPKQHFLPISPSASGRTSTIVPLSPGTSLQTPPAASESSIESQSSTRGKQSASLQPSLSTPTKYVVSAAADDTPTSKSNPSGSTKKKYVVLAYPMQSQTMQPSIDDKVSIPPVILIFSLFSALPYKQSNLLLNFARPQSQRVDRKLWNIHLFLQLDHLNLNLNIRYCHISLLPYNILDTNTFIYLIRSKELLSIHLMIHLLALLCLAKVQAKKGTYGLLAYSASVIDAYNIGNLTDCYNLILHRTNTIASVPAPPAKKLFKEHSQHTKDQR |
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| Function | Replication protein A 70 kDa DNA-binding subunit [UniProtKB/Swiss-Prot:P27694] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g73070 | LOC_Os01g73070.1 | Chr01 | 42392184 | 42394166 | + | MSU_osa1r7 | ||
| CDS seq | ATGTATCGAGGCGCAATTGAAGTTCTGAAACCTCTCATCCATGAAGGGAAGATCTACTACATTGAGTCGTTCACTGTCAAAGATGCAAACAGGACTTATAGACCAGTTTCAAATGACTTCATGATTTTATTCAGTAAATGGACAACCTTAGAAGAATGCATTGACATCCCAGCTGATTTCCCTACCATAACATTTTCATTGACACATTTCCAAGAAATCCCCTCTCTTGTTGGTAAAAACATATTCTATGTTGATATTATGGGCGTCATTACTGAGATCAGTTCCACATCTATCGTGCGTCCAAGGTCAAGGGATGCTGATAGTTTAAAAAGAACATTGCAGATCTGTGATGCAAGCAACTCAACACTGCCTGTCACACTGTGGGGAGATCGATCAACTGCTTTTGATGCAGAGAAAATATATAAGGATGGCCAAACTAAACCCCAGGTTGTCGTGTTTGTTGGAACACTTGTCAGAGATTATGCAGGGATAGGCTTAACAATAACTGGTAGCTCACCATGCAAATGGTATATCAATCTGGACATACCTGACGTGCTCAAATTGAAAGAAAGCTTCAGTGTCAACTTCCAGCCAATCAAATGGGTTGAAAATGCTGCTCCTGCATTCAACCAAGACACTCCAGAGGAAAAAACCATTAAAGAAATTCTAAAACTAAATCCGCACAAATATAAGGTCTATTCTACTCCATGA
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| Protein seq | MYRGAIEVLKPLIHEGKIYYIESFTVKDANRTYRPVSNDFMILFSKWTTLEECIDIPADFPTITFSLTHFQEIPSLVGKNIFYVDIMGVITEISSTSIVRPRSRDADSLKRTLQICDASNSTLPVTLWGDRSTAFDAEKIYKDGQTKPQVVVFVGTLVRDYAGIGLTITGSSPCKWYINLDIPDVLKLKESFSVNFQPIKWVENAAPAFNQDTPEEKTIKEILKLNPHKYKVYSTP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g73070 | LOC_Os01g73070.2 | Chr01 | 42392184 | 42395736 | + | MSU_osa1r7 | ||
| CDS seq | ATGTATCGAGGCGCAATTGAAGTTCTGAAACCTCTCATCCATGAAGGGAAGATCTACTACATTGAGTCGTTCACTGTCAAAGATGCAAACAGGACTTATAGACCAGTTTCAAATGACTTCATGATTTTATTCAGTAAATGGACAACCTTAGAAGAATGCATTGACATCCCAGCTGATTTCCCTACCATAACATTTTCATTGACACATTTCCAAGAAATCCCCTCTCTTGTTGGTAAAAACATATTCTATGTTGATATTATGGGCGTCATTACTGAGATCAGTTCCACATCTATCGTGCGTCCAAGGTCAAGGGATGCTGATAGTTTAAAAAGAACATTGCAGATCTGTGATGCAAGCAACTCAACACTGCCTGTCACACTGTGGGGAGATCGATCAACTGCTTTTGATGCAGAGAAAATATATAAGGATGGCCAAACTAAACCCCAGGTTGTCGTGTTTGTTGGAACACTTGTCAGAGATTATGCAGGGATAGGCTTAACAATAACTGGTAGCTCACCATGCAAATGGTATATCAATCTGGACATACCTGACGTGCTCAAATTGAAAGAAAGCTTCAGTGTCAACTTCCAGCCAATCAAATGGGTTGAAAATGCTGCTCCTGCATTCAACCAAGACACTCCAGAGGAAAAAACCATTAAAGAAATTCTAAAACTAAATCCGCACAAATATAAGCGAGCACGTTTTATTGTCAATGTTACTATCAAGAGCATACATGATGAAAACTGCTGGTGGTACAATTCATGTGACCGATGCTGCAGAACTTCAAAGCCATATGGTTCTACCTATAGATGCTCTAGCTGTTGTTATATAGGAATGCCAGTGCCAAGATACAAAGTTGTGCTCACTACCGCAGACAACACTTCTGAAGCTGCATTTGTCCTCTTCGGACGAATTGCACATCGCCTAATACACAGACCAGTGGAGTCTCTAATCGAAGAAAATCCACCTGACTTTATCCCAGCTGAGATCCAAGCTCTTGTAGATCAAGCCTTTGTATGGAATGTCAGCTTCACTGAACACACAGTTAAACGGAATCAAGAATCCTTACAGGTCAATAGCATTGTATCATCTGGTGCCCCAAAACAGCACTTCCTGCCTATCTCACCGTCTGCTTCAGGACGCACCTCAACTATCGTACCACTGAGCCCTGGCACTTCACTCCAAACACCACCCGCAGCAAGCGAAAGCAGTATTGAATCACAGTCATCAACCAGAGGAAAGCAAAGTGCATCTCTACAGCCAAGTCTATCAACACCAACAAAATATGTTGTTAGCGCTGCAGCAGATGACACACCAACTAGCAAGTCCAACCCCTCAGGATCCACCAAAAAGAAATATGTTGTCTTAGCATATCCTATGCAATCTCAAACAATGCAGCCTTCCATTGATGATAAGGTTAGTATTCCACCAGTTATACTAATATTCAGCCTATTTTCAGCACTACCTTACAAGCAATCTAATCTCCTACTTAATTTTGCAAGGCCACAAAGCCAAAGAGTGGACAGAAAACTTTGGAACATCCATCTCTTCCTGCAGCTGGACCATCTGAATCTGAATCTGAACATAAGGTACTGTCACATCTCTTTGCTTCCATATAACATATTAGATACTAACACATTTATCTATCTTATAAGATCAAAGGAACTTTTGTCAATACACCTGATGATCCACCTATTAGCCCTTCTGTGCCTAGCAAAAGTGCAAGCAAAAAAAGGTACCTATGGACTGCTTGCCTACAGCGCATCAGTGATAGATGCTTACAATATTGGTAATTTAACTGACTGTTATAACCTAATATTACACAGGACCAACACTATAGCTTCAGTTCCAGCTCCACCTGCTAAGAAGCTATTCAAAGAACATTCCCAGCACACAAAGGATCAAAGGTAA
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| Protein seq | MYRGAIEVLKPLIHEGKIYYIESFTVKDANRTYRPVSNDFMILFSKWTTLEECIDIPADFPTITFSLTHFQEIPSLVGKNIFYVDIMGVITEISSTSIVRPRSRDADSLKRTLQICDASNSTLPVTLWGDRSTAFDAEKIYKDGQTKPQVVVFVGTLVRDYAGIGLTITGSSPCKWYINLDIPDVLKLKESFSVNFQPIKWVENAAPAFNQDTPEEKTIKEILKLNPHKYKRARFIVNVTIKSIHDENCWWYNSCDRCCRTSKPYGSTYRCSSCCYIGMPVPRYKVVLTTADNTSEAAFVLFGRIAHRLIHRPVESLIEENPPDFIPAEIQALVDQAFVWNVSFTEHTVKRNQESLQVNSIVSSGAPKQHFLPISPSASGRTSTIVPLSPGTSLQTPPAASESSIESQSSTRGKQSASLQPSLSTPTKYVVSAAADDTPTSKSNPSGSTKKKYVVLAYPMQSQTMQPSIDDKVSIPPVILIFSLFSALPYKQSNLLLNFARPQSQRVDRKLWNIHLFLQLDHLNLNLNIRYCHISLLPYNILDTNTFIYLIRSKELLSIHLMIHLLALLCLAKVQAKKGTYGLLAYSASVIDAYNIGNLTDCYNLILHRTNTIASVPAPPAKKLFKEHSQHTKDQR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.226689 | 0.179887 | 0.162095 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0932000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0932000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026150 | SBH | 0.0 | 2.035789 | 5.564703 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028590 | RBH | 0.0 | 0.000000 | 1.364492 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026120 | SBH | 0.000000 | 2.830213 | 12.929478 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039450 | SBH | 0.414962 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0038510 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0696500 | RBH | 3.9139555 | 6.1487245 | 8.441972 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038190 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0696300 | RBH | 1.1630015 | 3.137042 | 3.3482945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0038530 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0038490 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0038720 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039280 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0038550 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039060 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0038760 | SBH | 0.0 | 0.0 | 0.0 |
