Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g64640 | OGI:01111370 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:37513746-37514564 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCCGCCCAAAATTTCCCAAACTCCCGCCCTCCTCTCCCCTACTTAAACACCTCGCATCCTCTCGAATTCCCCATCTCATCCCAATCCCCCAAATCCACCCGAGCATTCGAAGCTTGTAGAAGAAGCCCTAGCCTCTCCTCCTCATCACCGATGGCCCGCACCAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACGAAGGCGGCGCGCAAGTCGGCCCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCGCTGCAGGAGGCGGCCGAGGCCTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGCGAGAGGGCCTAGGCGTGATCTGCTCGAGAGGCTGTGATACCCTGGTAGTTCTAGTGGTGGTTCCTGTGTCTAGTCTGCACATGTAGAGATTTGATGGGGTTCCTTGGTTGGTGTTTGATCTCAGATCTGTCATGGCCTAGTTGGGGTGTTGCGTATGTAATTTATCTGTCTTACTCTTATGTGATCCCATGGTGTTGGAATGAAATGGAAGTGAAGAATTCTACTTATCACCAAATCCGAAAATTCTCCTGGAGTTTTTGCTTCTGGCA
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| CDS seq | ATGGCCCGCACCAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACGAAGGCGGCGCGCAAGTCGGCCCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCGCTGCAGGAGGCGGCCGAGGCCTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGCGAGAGGGCCTAG
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.2 [UniProtKB/Swiss-Prot:Q76MV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g64640 | LOC_Os01g64640.1 | Chr01 | 37513746 | 37514564 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCCGCACCAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACGAAGGCGGCGCGCAAGTCGGCCCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCGCTGCAGGAGGCGGCCGAGGCCTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGCGAGAGGGCCTAG
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.433231 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0160100 | SBH | 0.0 | 0.0 | 0.764042 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36280 | RBH | 0.0 | 0.0 | 1.894834 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0160100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041490 | RBH | 0.0 | 36.167805 | 3.094907 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0041020 | RBH | 0.0 | 17.717779 | 3.677505 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041410 | RBH | 0.0 | 43.500725 | 1.916657 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040880 | RBH | 0.0 | 2.489550 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040430 | RBH | 1.278186 | 34.902603 | 16.444437 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0617200 | RBH | 81.343971 | 23.7649755 | 58.8181325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0040100 | RBH | 0.000000 | 4.404579 | 0.150482 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0616700 | RBH | 68.9074195 | 1.0910815 | 308.5638735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040440 | RBH | 0.0 | 1.159881 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040410 | RBH | 0.222711 | 40.392387 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040660 | RBH | 5.743178 | 91.929283 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040610 | RBH | 0.0 | 4.335617 | 0.281086 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040470 | RBH | 0.0 | 34.215672 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040920 | RBH | 0.0 | 9.216550 | 5.412929 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040590 | RBH | 0.0 | 57.808277 | 10.519984 |
