Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g56270 | OGI:01077870 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:32408275-32413635 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATCTTCATCCAATCTAGTCTCGTTCCCCAGCACTCCGTCGTTGACGGGAGCCACCAAAACAGGCCCGAGCCCCTGCAGCGCCGGCCACCGGTCGCCTCCACGCCGGTGCAGTCGTGCCCTAGCCGCCCCGGTGGCCTATCCCTAGGAATCCAGGTCCAGTTCCGACTCGCGCGGCGTGGCTAGCATCCTCCGCGCGTCCCCGTTACATGTCCCTTGTGCGTGCCACACATCAGCAATAGCGACCTCACCATCACATTTTCACTTGGTGTTGGTGGATCTGTGCTTGGTGATCAAGACGGTCAAGACCCTAAGGCAGTCAAGTGCATATGACGGCAGGTTAGCAAATTGTTAAGCACTAAGTTTTTCTATGCACACCAAGTGTTTGTCATTTTTCTTGTACGCAGATGGCATCTTAAAACTTTACCCTGCATCTTATTGTTTCAATTTTTAATCTAGCTCACAGAAACTCTTATATTAACCATATAATTTAATCTGTACAACCAAAAATATTGGCTCATAGTGCAGTTTAATTCCTCAATTATCATGTAAAGTCCTTAATTCTTTATTCTGATTGCTTTTGTCAATCCCATCTGCAGCAATGTCTGATCCACTCATGTACTGCTTTGCTATTTTTCTGATCTAGCCAGTAGATAAGATGGTCGTTTTCGTTTGGTTCAATTAAGCAAGCATCAGGGCTGCATCGACGCTGTATCTACTGGATCCTAATCCTAAGCTTCCAGGTACAGTTAACCTCACCTACACATGTTCGGTAGACAAATTTCTTTTGGCTTGAAGGCATAATTATAGAATCAAAAATATTTAGTGGTTGTTGTCAAATTAGGAACACTCATGTATTAACTATATTTCTTATTTTAACACAGAAAATTGATGGATTTGAATAATATTAAGAAGTTATTGCTTTTCCCTAGACCAAGTGATGAGTACCTTGCTGGAATAGATGGTTTTCTTCTGTTTGCATATAGGGAAAAGAGTCTTGAAGATAAGATCCGATGTCCATGTAAGGAGTGTGTCAACAAGTGGTTATTAATGCGGGATGAAGTGTATGATCATTTAGTATGTCATGGAATGTTACTTCGGTATAGTCCTTGGGGTTGTCATGGTGAAACCACATCATTCATCTCTGCCAACAGTAGGGGAACAGAGTCACAAAGTAGAGGAATGGATGGTAACATGCGCCAACTAGTGCAAGATGCTTTTGGGAACACAAACAATGACCCTCCAGTGAATGAATATGATGTACAAAATTCTTTAAACAGTGGGCCAGACCATGAAACAAAAGCATTCTATGACTTGCTCCGAGATGCTCATGACCCTTTGTGGGAAGGGTGTGAACTTACAAGGCTGTCATTTCTAGTTCTCTTGTTTCACATAAAATCAGTTAACAAGTGAAATAATAAATCATTAAATGATTTGCTAGCAATCTTGCAACAAGCAATTCCAAATGGTAAGAATTTACCTGGAACATTTGCTGAAGCTAAGAAGATAATAGGAAAGCTTGGACTTAATTATGTCAAAATTCATGTTTGTCCAAATAACTGCCAGCTTTATAGGAAAGCTAAGGCAAACGATGACTTTTGTTCAAAATGTGGTACTTCAAGGTGGAAAAACAAAGAAGATAAAACTACTTTAACAAAGAAGGAAAGGAGAAGGGCAACCCCAAGGAAAGTGTTAAGGTACTTCCCAATTAAGCCAAGGCTTAAGAGGTTATTTATGCACAAGGAAACAGCTATAGCATTAAGATGGCATGATGAGGGTCGTACAAAGGATGGTGTGTTGCGTCATCCAGCTGACTCAGAGGCTTGGAAGTCCATTGACTCTAGGAATCCCCAGTTTGCATCGGATTCTCGAAACATCAGGTTTGCAATGGCTAGTGATGGATTTAATCCTTTTGGGACATTGAGTTCAACTTATAGTTGTTGGCCAGTTGTCTTGATTCCATATAACCTTCCTCCATGGTTATGCATGAAAGCATCTTCTATTATGCTTGCACTAATAATTCCTGGTCCATCTTACCCTGGAAAGGATTTTCATTTATTTATGGAACCAGTTTATGAAGAGTTATTTGATTTATTTGAGGTTGGAACTCCTACATATGATGCATCTCAAAATGAGATGTTTCAGCTTCGTGCTACAGTACTGTTCACTATTAGTGACTATCCTGGGATTGGGATCTTTGCGGGATATAGTGTCAATGGTGAATTTGCTTGTATTATGTGTCGTGAAGAAACGTGCTCTAAACGTTTGAAACATGGACACAAGTATTGTTTCATGGGACATCGTCGATTTCTTCCTCTGGACCATGAATTACGATATAATGAAAATTCTTTTGATGGAACTGAAGAACATAGAGTAGAACCTCTTGCTTATTCTGAAACATCAGTTTTACAAAAGATAGAGAAAATTAATGATTTTGAGAAGTCAAAAACATGGAAATGCCGTAGTGGCTTATTTTCGTTGCCTTACTGGGACTTGAATGTACTCCATCATAATCTTGATGTAATGCATATTGAGAAGAATGTTTGTGATAACATATATGGGACATTGTTAGGACTGGAAGGCAAATCAAAGGATAATTTACAAGCACGCTTGGACCTACAAGAAATGAATATAAGGCCAGATTTGCATCCCATAAGAAAAGCTAATAATAAGTATTATTTGCCTCCTGCTTCCTATACAATGTCTAAACGGGAGAAACATCAATTTTGCAAAGTTCTCCATGATATTAAGGTTCCAGATGGATATGCAGAAAACATCTCAAAATGTATAAATGTTAGTCAAGGGAAAATTTCAGGTCTTAAAAGTCATGACTGTCATATTCTAATGCAAGAACTTCTCCCAGTTGCTTTGCGGGGTGTGCTTCCTTACAATGTCACTTTTGTCTTATTTGATCTATGTGGATATTTTAGAGAACTGAGTTCAAAAGTCCTGTACATTGATGTGCTTGACAAGTTAGAGGAACAAATTAAAATGACATTATGTCGTTTGGAGATGATATTTCCACCAGGTTTTTTTACCATTATGGTGCACTTGGTTGTTCATTTAGCCACTGAAGCAAAATTAGGAGGTCCTGTGTGTTACCGATATATGTATTTTGTGGAAAGGTACATTTCTCTCACAAATATAATTTCATTTGTTATCTAGTATAGAATTTTTAACATTTTTAATCTTTCTCTTTATTTATGTAGGTATTTGAGTGTATTAAAGTCATATGTGCGTAATAAGGCACATCCTGAAGGATGTCTTGCAGAAGCATATTTGGCAGATGAGTGTATAACATTTTGTTCAAGATATCTTGAAGGTTTTGAGACAAAGCATAACCAGCCTACACGAAATGATGATAATGATGAGTCAGTTGCATGTTCAGATGATGAATGCACACCATATCTTTTTCCTCATGTTGGAAAACCACTTGGCAAGCCGAGAAGTTATGTTATTAGGGGCTTGACTAAAATGCAAGCACATAGATATGTGCTCTTCAACTGTCCAGATGTCAACCCATACCTTCGGTATTAGCTCAAGATCATACACTTCATCACTAATCATTTTCTTCAAAGCATACTTCATGACACTTTTTCCTTTTACAGAACTCATGCTGATGAGATTAGAAGAACATATCGGCAAGGCCGCATCACCCCAAAGATTATCGAGCGTATCCAAAATGAAAAATTCCATGAATGGTTCAGAGCTCATGTAAGTTTCGTGTTATTATCATTTAGATCAACAAATAAAATCATGACTAAGTAATCCTATGTACACAGATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCATAGATGGCTGGCTCGTGGTCCGATTGGTCCAGCAAAAAGATATCGTGCTTTCAATACCCGTGGCTTCCGGTTTAGGCCTAAACATTTGGATGGAGTGACACAGAATAGCGGAGTTGTCCTAAGTGCAAAAACATCCAGTTATACTAAATCAAGTGACACAAATCCAATATTGGGTGATCTAACATACTATGGTAGAGTCATCGATATTATTGAGCTAAATTACTCTGGACAATTTTCAGTAGTACTGTTTAAATGTGAATGGGTTGATGTTGTTTCTGGAAAAGGAGTTAAAAAAGATAAGTATGGTTACACACTAGTTAACTTCTCACATCTCATACATACTGGAGAAAAAGTTGAGCATGAGCCTTTTATTTTCCCCAATCAAGCAGATCAAGTTTATTATGTTGATGATCCAATGAATCCTGAGTGGTCTGTGGTAAGGAAGAACAAACCTAGAGATATATATGACATTGGTGAGGATGAATGGGCAGGTGACATAGAAATTGAGCCATTCCATGTTTCACACCTTGGTGGAATGTCCAGTAATGCAAACAATTACAAGCAATGGGTTAGAACAGATGTTGAAGGAACAACAGTAGATGTTGATAATAATGCTTTGAATAATGAAGGATAACAGAGGAAAATAGTTACTCTTTCATGATTTATTTCATTACTTCAAGGTATATGCAATTACCTGATCTAAAACCTTTTGATGGATTTATTTTTGTTAGCAAAGGTGCTTCCAGTTTTAGAACTATCGAAAACTCTATCCAACTGAATGCATCTAAATCCAACAATATTTATGGTCTTTTAATTTAACTTTTCTGCCTTTTTGGTGTACGGTACAACTATTAGGTCCACTGGTTAAGTATGATCTTACATTATGTTCTTGTGAGAAATATGATTACAAGCGTAGTGGATGAATAATTTGTGGTTACCTTGGCTATTCTTTCTATTAAAAGATAGCAATAATCGTTGTGTTTATATTTATTTCTGATTGATTAAAACATGTTCATGCATGTTCATGTCCATTCTTTGCTCTATATTGTTTAGTTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAGGTATCTGTCTTTCTAGATTCTATTGATCAGCTCGCTATCTCCATGTCTTCTTTAACAACAAAAGAAATGTCATGTCTTTGCTGATGAACTTGGTTTCTTTTCCTACATGGCCAGGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAGCTGTCACTAAGCAACATATGGCAGTTCTAGTCCAAGCAAACATGAGTTTAGGCCAGTCTTCAGTAGTCAATAATAATTCCCAATGTAGTCTATCTGTATAGATTATTTTAAATTTGTTCGTGTGAGCTTTTCCTTTTCTATTGCTATATTGATTAGTCCTGTAATCATGTCTGGGTTATGTGATCTCTCTAGCATCTTGTTTTTTACCATATTACTGAAATGATTATTCTTTCATATTGCCGAAATGATTATTCTTCCATTTTTTTTCT
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| CDS seq | ATGGTGCACTTGGTTGTTCATTTAGCCACTGAAGCAAAATTAGGAGGTCCTGTGTGTTACCGATATATGTATTTTGTGGAAAGGTATTTGAGTGTATTAAAGTCATATGTGCGTAATAAGGCACATCCTGAAGGATGTCTTGCAGAAGCATATTTGGCAGATGAGTGTATAACATTTTGTTCAAGATATCTTGAAGGTTTTGAGACAAAGCATAACCAGCCTACACGAAATGATGATAATGATGAGTCAGTTGCATGTTCAGATGATGAATGCACACCATATCTTTTTCCTCATGTTGGAAAACCACTTGGCAAGCCGAGAAGTTATGTTATTAGGGGCTTGACTAAAATGCAAGCACATAGATATGTGCTCTTCAACTGTCCAGATGTCAACCCATACCTTCGAACTCATGCTGATGAGATTAGAAGAACATATCGGCAAGGCCGCATCACCCCAAAGATTATCGAGCGTATCCAAAATGAAAAATTCCATGAATGGTTCAGAGCTCATATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCATAGATGGCTGGCTCGTGGTCCGATTGGTCCAGCAAAAAGATATCGTGCTTTCAATACCCGTGGCTTCCGGTTTAGGCCTAAACATTTGGATGGAGTGACACAGAATAGCGGAGTTGTCCTAAGTGCAAAAACATCCAGTTATACTAAATCAAGTGACACAAATCCAATATTGGGTGATCTAACATACTATGGTAGAGTCATCGATATTATTGAGCTAAATTACTCTGGACAATTTTCAGTAGTACTGTTTAAATGTGAATGGGTTGATGTTGTTTCTGGAAAAGGAGTTAAAAAAGATAAGTATGGTTACACACTAGTTAACTTCTCACATCTCATACATACTGGAGAAAAAGTTGAGCATGAGCCTTTTATTTTCCCCAATCAAGCAGATCAAGTTTATTATGTTGATGATCCAATGAATCCTGAGTGGTCTGTGGTAAGGAAGAACAAACCTAGAGATATATATGACATTGGTGAGGATGAATGGGCAGGTGACATAGAAATTGAGCCATTCCATGTTTCACACCTTGGTGGAATGTCCAGTAATGCAAACAATTACAAGCAATGGGTTAGAACAGATGTTGAAGGAACAACAGTAGATGTTGATAATAATGCTTTGAATAATGAAGGATAA
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| Protein seq | MVHLVVHLATEAKLGGPVCYRYMYFVERYLSVLKSYVRNKAHPEGCLAEAYLADECITFCSRYLEGFETKHNQPTRNDDNDESVACSDDECTPYLFPHVGKPLGKPRSYVIRGLTKMQAHRYVLFNCPDVNPYLRTHADEIRRTYRQGRITPKIIERIQNEKFHEWFRAHIMDLERKNGICSVKNDHRWLARGPIGPAKRYRAFNTRGFRFRPKHLDGVTQNSGVVLSAKTSSYTKSSDTNPILGDLTYYGRVIDIIELNYSGQFSVVLFKCEWVDVVSGKGVKKDKYGYTLVNFSHLIHTGEKVEHEPFIFPNQADQVYYVDDPMNPEWSVVRKNKPRDIYDIGEDEWAGDIEIEPFHVSHLGGMSSNANNYKQWVRTDVEGTTVDVDNNALNNEG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g56270 | LOC_Os01g56270.1 | Chr01 | 32408275 | 32413635 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGCACTTGGTTGTTCATTTAGCCACTGAAGCAAAATTAGGAGGTCCTGTGTGTTACCGATATATGTATTTTGTGGAAAGGTATTTGAGTGTATTAAAGTCATATGTGCGTAATAAGGCACATCCTGAAGGATGTCTTGCAGAAGCATATTTGGCAGATGAGTGTATAACATTTTGTTCAAGATATCTTGAAGGTTTTGAGACAAAGCATAACCAGCCTACACGAAATGATGATAATGATGAGTCAGTTGCATGTTCAGATGATGAATGCACACCATATCTTTTTCCTCATGTTGGAAAACCACTTGGCAAGCCGAGAAGTTATGTTATTAGGGGCTTGACTAAAATGCAAGCACATAGATATGTGCTCTTCAACTGTCCAGATGTCAACCCATACCTTCGAACTCATGCTGATGAGATTAGAAGAACATATCGGCAAGGCCGCATCACCCCAAAGATTATCGAGCGTATCCAAAATGAAAAATTCCATGAATGGTTCAGAGCTCATATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCATAGATGGCTGGCTCGTGGTCCGATTGGTCCAGCAAAAAGATATCGTGCTTTCAATACCCGTGGCTTCCGGTTTAGGCCTAAACATTTGGATGGAGTGACACAGAATAGCGGAGTTGTCCTAAGTGCAAAAACATCCAGTTATACTAAATCAAGTGACACAAATCCAATATTGGGTGATCTAACATACTATGGTAGAGTCATCGATATTATTGAGCTAAATTACTCTGGACAATTTTCAGTAGTACTGTTTAAATGTGAATGGGTTGATGTTGTTTCTGGAAAAGGAGTTAAAAAAGATAAGTATGGTTACACACTAGTTAACTTCTCACATCTCATACATACTGGAGAAAAAGTTGAGCATGAGCCTTTTATTTTCCCCAATCAAGCAGATCAAGTTTATTATGTTGATGATCCAATGAATCCTGAGTGGTCTGTGGTAAGGAAGAACAAACCTAGAGATATATATGACATTGGTGAGGATGAATGGGCAGGTGACATAGAAATTGAGCCATTCCATGTTTCACACCTTGGTGGAATGTCCAGTAATGCAAACAATTACAAGCAATGGGTTAGAACAGATGTTGAAGGAACAACAGTAGATGTTGATAATAATGCTTTGAATAATGAAGGATAA
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| Protein seq | MVHLVVHLATEAKLGGPVCYRYMYFVERYLSVLKSYVRNKAHPEGCLAEAYLADECITFCSRYLEGFETKHNQPTRNDDNDESVACSDDECTPYLFPHVGKPLGKPRSYVIRGLTKMQAHRYVLFNCPDVNPYLRTHADEIRRTYRQGRITPKIIERIQNEKFHEWFRAHIMDLERKNGICSVKNDHRWLARGPIGPAKRYRAFNTRGFRFRPKHLDGVTQNSGVVLSAKTSSYTKSSDTNPILGDLTYYGRVIDIIELNYSGQFSVVLFKCEWVDVVSGKGVKKDKYGYTLVNFSHLIHTGEKVEHEPFIFPNQADQVYYVDDPMNPEWSVVRKNKPRDIYDIGEDEWAGDIEIEPFHVSHLGGMSSNANNYKQWVRTDVEGTTVDVDNNALNNEG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g56270 | LOC_Os01g56270.2 | Chr01 | 32408282 | 32413599 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGCACTTGGTTGTTCATTTAGCCACTGAAGCAAAATTAGGAGGTCCTGTGTGTTACCGATATATGTATTTTGTGGAAAGGTATTTGAGTGTATTAAAGTCATATGTGCGTAATAAGGCACATCCTGAAGGATGTCTTGCAGAAGCATATTTGGCAGATGAGTGTATAACATTTTGTTCAAGATATCTTGAAGGTTTTGAGACAAAGCATAACCAGCCTACACGAAATGATGATAATGATGAGTCAGTTGCATGTTCAGATGATGAATGCACACCATATCTTTTTCCTCATGTTGGAAAACCACTTGGCAAGCCGAGAAGTTATGTTATTAGGGGCTTGACTAAAATGCAAGCACATAGATATGTGCTCTTCAACTGTCCAGATGTCAACCCATACCTTCGAACTCATGCTGATGAGATTAGAAGAACATATCGGCAAGGCCGCATCACCCCAAAGATTATCGAGCGTATCCAAAATGAAAAATTCCATGAATGGTTCAGAGCTCATATAATGGATCTAGAGAGGAAAAATGGCATATGCAGTGTCAAGAATGATCATAGATGGCTGGCTCGTGGTCCGATTGGTCCAGCAAAAAGATATCGTGCTTTCAATACCCGTGGCTTCCGGTTTAGGCCTAAACATTTGGATGGAGTGACACAGAATAGCGGAGTTGTCCTAAGTGCAAAAACATCCAGTTATACTAAATCAAGTGACACAAATCCAATATTGGGTGATCTAACATACTATGGTAGAGTCATCGATATTATTGAGCTAAATTACTCTGGACAATTTTCAGTAGTACTGTTTAAATGTGAATGGGTTGATGTTGTTTCTGGAAAAGGAGTTAAAAAAGATAAGTATGGTTACACACTAGTTAACTTCTCACATCTCATACATACTGGAGAAAAAGTTGAGCATGAGCCTTTTATTTTCCCCAATCAAGCAGATCAAGTTTATTATGTTGATGATCCAATGAATCCTGAGTGGTCTGTGGTAAGGAAGAACAAACCTAGAGATATATATGACATTGGTGAGGATGAATGGGCAGGTGACATAGAAATTGAGCCATTCCATGTTTCACACCTTGGTGGAATGTCCAGTAATGCAAACAATTACAAGCAATGGGTTAGAACAGATGTTGAAGGAACAACAGTAGATGTTGATAATAATGCTTTGAATAATGAAGGATAA
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| Protein seq | MVHLVVHLATEAKLGGPVCYRYMYFVERYLSVLKSYVRNKAHPEGCLAEAYLADECITFCSRYLEGFETKHNQPTRNDDNDESVACSDDECTPYLFPHVGKPLGKPRSYVIRGLTKMQAHRYVLFNCPDVNPYLRTHADEIRRTYRQGRITPKIIERIQNEKFHEWFRAHIMDLERKNGICSVKNDHRWLARGPIGPAKRYRAFNTRGFRFRPKHLDGVTQNSGVVLSAKTSSYTKSSDTNPILGDLTYYGRVIDIIELNYSGQFSVVLFKCEWVDVVSGKGVKKDKYGYTLVNFSHLIHTGEKVEHEPFIFPNQADQVYYVDDPMNPEWSVVRKNKPRDIYDIGEDEWAGDIEIEPFHVSHLGGMSSNANNYKQWVRTDVEGTTVDVDNNALNNEG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.297937 | 0.579515 | 0.355271 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0768600 | RBH | 0.523054 | 0.854246 | 1.589102 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g35940 | SBH | 0.115888 | 0.216573 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0768600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0423000 | RBH | 7.194071 | 11.610084 | 59.882141 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0411800 | RBH | 10.21922 | 18.670108 | 5.9032415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
