Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g55390 | OGI:01096160 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:31909559-31911650 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACAAAGGGAATAATTCAGCCTAGTTCTAGTCCTTTTTCATCACCAGTTTTGTTAGTGAAGAAAAAGGATGGTACATGGCGTTTTTGTGCCGACTACCGACATATCAATGCTATAACTATAAAGAACAAATATCCTCTTCCAATTATCGATGAGTTACTCGATGAGTTGTCAGGAGCTCAGTGGTTTACCAAACTTGATCTCCGAGCTGGGTATCATCAGATTCGAATGCAGTCAGTTGATGAACACAAAACAGCGTTTAAAACTCATCATGGCCATTTTGAATTCAGAGTCATGCCCTTTGGTCTCACTAGTGCACCAGCCACATTTCAGAGTTGCATGAACAGCATTCTGTCTCCTTTGTTGAGAAGATTTGTTCTTGTTTTTGTTGATGATATTTTGATTTATAGCAAGACTCTTCCTGAGCATGTCAAGCATCTTCAGATAGTCTTGCAGATCTTGACTACACATCAGCTCAAAGTCAAGAAGAGCAAATGCTCCTTTGCTCAACAAAGATTGGCTTACTTGGGTCACATTATGAGTCCTAATGGAGTTTCGACTGATGAAGATAAAATTCAGGCTGTCAGCAATTGGCCTACCCCTACCTCTGTTAAGGAGTTACGTGGTTTTCTGGGTTTAGCTGGTTATTACCAGAAATTTGTGCGACATTATGGACTTCTCAGTAAACCATTAACTAATCTGTTGAGGAAGGGCCAACTGTACATTTGGACTGCTGAAACTGAACAGGCTTTTCAAGCTCTGAAGCATGCCTTAATCACTGCTCCAGTATTATCGATGCCAGATTTCAATGAACCTTTTATTGTAGAAACAGATGCCTCTGATAAAGGGATTGGAGCAGTATTAATGCAGAAAAATCATCCTGTTGCCTTTTTGAGTAGAGCTTTGGGTCCCCGCCATCAAGGGTTGTCTACTTATGAGAAAGAAAGCTTGGCTATCATGTTAGCTGTGGATCATTGGCGCCCATGCAGAGTTTTTTATCAGAACAGATCATCGCAGTCTATCTTTTTTGGATGATCAACGACTCACTACTCCGTGGCAACATAAAGCGTTAACTAAACTGCTTGGCTTGCGGTATAAAATCATTTACAAGAAAGGCACTGAAAATGGAGCTGCTGATGCTTTATCGCGCTGTCCATCTGCTGATAAAGTGTTTGAACTTACTGCTATATCCTCAGTTATTCCTAACTGGATTCAAGAGGTGGTTGATGGCTATATGTCTGATCCTGAGGCTTCTAGTAAGGTTCAAACATTGTGTATTAGTCCAGCTGCTGTTCCAGACTTCACTCTGAAGGATGGTGTTCTTTACTTTAAGAACATAATGTGGATTGGTAACAATGTTCAGGTTCAACAAAAGATTTTGGCCAACCTTCACACTGCACCAGTAGGGGGTCATTCTGGTATACATGTCACTTATCAACGGGTTAAACAGTTGTTTGCTTGGCCTCACTTACGTTCTACTGTGATGCAGTTTGTGAATTCTTGTTCTATCTGTCAGCAAGCAAAGTCAGAACATGTCAAATACCCTGGAATGTTACAACCATTACCTGTTCCAGAACATGCCTGGTTCTGGCCAAAGTTGGAGAAGTGGCTTATAAATTGGCTTTGCCGGCCACTAGTCTGATTCATCCTGTCATCCATGTTTCCCAACTCAAGAAAGCTTTGGCGCCCAGTGAATCACTGTATCCTTCTTTGCCCAGGATTCAGTCAAGGGATGATCCTCATGTTGTCACATGGGAGAATGCTCAAGAGCTGCGTCTTCGTTTTCCTCAATCTGAAGCTTGGGGACAAGCTTCGTCTCAAGGTGGAGGGAATGTCACGGCGGCAAGTTCTCTGAAGCTGGATTCAAATCAAACTGCAGCGGCCCAGCCTGTTAGGCGATCCAAGCGTGAGGCACAACCCAGTATCCGTTTTCCTAAGAGTGTGTGGACCCAGTAGATAGAGGCTGGGCCACTGTCAGGGAGAGAGGCTTGTTAGTGCATTACTATATAAGCCGGCAGGTTAGAGAGAAAAGGGGATCGAATCATGTAAACAATACAATTCAATCTAATTCCAATCTCTCTGCTTGTTCTTTTC
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| CDS seq | ATGCAGTCAGTTGATGAACACAAAACAGCGTTTAAAACTCATCATGGCCATTTTGAATTCAGAGTCATGCCCTTTGGTCTCACTAGTGCACCAGCCACATTTCAGAGTTGCATGAACAGCATTCTGTCTCCTTTGTTGAGAAGATTTGTTCTTGTTTTTGTTGATGATATTTTGATTTATAGCAAGACTCTTCCTGAGCATGTCAAGCATCTTCAGATAGTCTTGCAGATCTTGACTACACATCAGCTCAAAGTCAAGAAGAGCAAATGCTCCTTTGCTCAACAAAGATTGGCTTACTTGGGTCACATTATGAGTCCTAATGGAGTTTCGACTGATGAAGATAAAATTCAGGCTGTCAGCAATTGGCCTACCCCTACCTCTGTTAAGGAGTTACGTGGTTTTCTGGGTTTAGCTGGTTATTACCAGAAATTTGTGCGACATTATGGACTTCTCAGTAAACCATTAACTAATCTGTTGAGGAAGGGCCAACTGTACATTTGGACTGCTGAAACTGAACAGGCTTTTCAAGCTCTGAAGCATGCCTTAATCACTGCTCCAGTATTATCGATGCCAGATTTCAATGAACCTTTTATTGTAGAAACAGATGCCTCTGATAAAGGGATTGGAGCAGTATTAATGCAGAAAAATCATCCTGTTGCCTTTTTGAGTAGAGCTTTGGGTCCCCGCCATCAAGGGTTGTCTACTTATGAGAAAGAAAGCTTGGCTATCATGTTAGCTGTGGATCATTGGCGCCCATGCAGAGTTTTTTATCAGAACAGATCATCGCAGTCTATCTTTTTTGGATGA
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| Protein seq | MQSVDEHKTAFKTHHGHFEFRVMPFGLTSAPATFQSCMNSILSPLLRRFVLVFVDDILIYSKTLPEHVKHLQIVLQILTTHQLKVKKSKCSFAQQRLAYLGHIMSPNGVSTDEDKIQAVSNWPTPTSVKELRGFLGLAGYYQKFVRHYGLLSKPLTNLLRKGQLYIWTAETEQAFQALKHALITAPVLSMPDFNEPFIVETDASDKGIGAVLMQKNHPVAFLSRALGPRHQGLSTYEKESLAIMLAVDHWRPCRVFYQNRSSQSIFFG |
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| Function | Retrovirus-related Pol polyprotein from transposon 17.6 [UniProtKB/Swiss-Prot:P04323] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g55390 | LOC_Os01g55390.1 | Chr01 | 31909559 | 31911650 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGTCAGTTGATGAACACAAAACAGCGTTTAAAACTCATCATGGCCATTTTGAATTCAGAGTCATGCCCTTTGGTCTCACTAGTGCACCAGCCACATTTCAGAGTTGCATGAACAGCATTCTGTCTCCTTTGTTGAGAAGATTTGTTCTTGTTTTTGTTGATGATATTTTGATTTATAGCAAGACTCTTCCTGAGCATGTCAAGCATCTTCAGATAGTCTTGCAGATCTTGACTACACATCAGCTCAAAGTCAAGAAGAGCAAATGCTCCTTTGCTCAACAAAGATTGGCTTACTTGGGTCACATTATGAGTCCTAATGGAGTTTCGACTGATGAAGATAAAATTCAGGCTGTCAGCAATTGGCCTACCCCTACCTCTGTTAAGGAGTTACGTGGTTTTCTGGGTTTAGCTGGTTATTACCAGAAATTTGTGCGACATTATGGACTTCTCAGTAAACCATTAACTAATCTGTTGAGGAAGGGCCAACTGTACATTTGGACTGCTGAAACTGAACAGGCTTTTCAAGCTCTGAAGCATGCCTTAATCACTGCTCCAGTATTATCGATGCCAGATTTCAATGAACCTTTTATTGTAGAAACAGATGCCTCTGATAAAGGGATTGGAGCAGTATTAATGCAGAAAAATCATCCTGTTGCCTTTTTGAGTAGAGCTTTGGGTCCCCGCCATCAAGGGTTGTCTACTTATGAGAAAGAAAGCTTGGCTATCATGTTAGCTGTGGATCATTGGCGCCCATGCAGAGTTTTTTATCAGAACAGATCATCGCAGTCTATCTTTTTTGGATGA
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| Protein seq | MQSVDEHKTAFKTHHGHFEFRVMPFGLTSAPATFQSCMNSILSPLLRRFVLVFVDDILIYSKTLPEHVKHLQIVLQILTTHQLKVKKSKCSFAQQRLAYLGHIMSPNGVSTDEDKIQAVSNWPTPTSVKELRGFLGLAGYYQKFVRHYGLLSKPLTNLLRKGQLYIWTAETEQAFQALKHALITAPVLSMPDFNEPFIVETDASDKGIGAVLMQKNHPVAFLSRALGPRHQGLSTYEKESLAIMLAVDHWRPCRVFYQNRSSQSIFFG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.236763 | 0.0 | 0.476051 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0640100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10244 | RBH | 0.318713 | 0.199545 | 0.025189 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0640100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034311 | RBH | 0.043118 | 2.382331 | 1.872674 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033831 | RBH | 0.076553 | 2.436650 | 1.151488 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0529300 | RBH | 2.321591 | 5.8700135 | 10.068329 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0033031 | RBH | 0.043880 | 0.160660 | 0.697742 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0525300 | RBH | 3.921675 | 14.8959155 | 15.2633575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
