Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0640100 | OGI:01073910 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:25710912-25712866 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTATCAAGGTGTGGGCTCGTCTCGGCTCGCAGGAACTCGTCGCCCTCCTTGACTCCGGCTCAACACACAACTTCATCAACGATGCCATCGCGCACCAGGCTAGCGTCCCTCTACAGCGCCGCCCCGGCCTCAGCGTAGCCGTGGCCAATGGAGATCGCGTGCCGTCACCGGGCAGGTGCCCGCCACAGCGCGTCTCCATCGGCTCGCACGAGTTCGACATCGACTTCTATGCACTCCCGCTTGGCGGCTACGACATTGTGCTAGGTGCACAGTGGCTCGGCACCCTCGGACCGACGCTATGGGATTTTTCTCGACAATCCCTCGCCTTCGGACCCGCCCACGACCGCGTCACGTGGACAAGTATCGACGCCGCACCGGCGCCCGCCCTTGCTGCCGCCATCGACGGTCAGCCGGGCGACCTCATGACCGATCTGCTCGACGTCTTGAAAGACCTCTTCACCGAGCCGCACGGACTACCGCCAGAACGCCATCTCTGCCACCGCATACGACTGGAGGCAGGGGTATCGGCTGTTGCGGTGCGCCCGTATCGGTACGCGCACATCCAGAAAGATGAGCTCGAGCGACAGTGCGACGATATGCTCCGCCACGGCGTCATCCGGCCCAGCTCGTCGGCATTCTCGTCCCCGGCTTTGCTGATCAAGAAGTGCGACGGCTCCTGGCGCTTCTGCGTCGACTACCGCGCCCTCAACGACAAGACCATCAAGGATAAGTTCCCGATCCCGGTCGCCGAGGAACTCTTCGACGAGCTGCGCGGCGCCAAATTCTTCACCAAGTTGGATATGCGTTCCGGCTACCACCAAGTGCTGATGCATCCGGACGACGTGCACAAGACGGCGTTCCGCACCCACCAAGGCCTCTTTGAGTTCTTGGTGATGCCCTTCGGACTCACGAACGCGCCGGCGACATTCCAAGCCTTGATGAACGACGTGCTGCTTCCGTTCCTCCGCCGGTTCGTGCTCGTCTTCTTTGATGATATTCTAATATACAGCTCGTCTTGGTCGGAGCACCTCCGCCATGTACGCACGGTGTTGCAAACGCTGCAAGATCATTGCCTCCACCTCAAGCGCTCCAAGTGTGAGTTCGGCCTCACCTCCGTCGCATACCTGGGGCATGTCATCTCCGGGGACGGTGTGGCGATGGACCGTAGCAAGGTCCAGGCTGTGCTGGACTGGCCGGTGCCCAAGACGGTGCGCGCTGTTCGGGGCTTCTTGGGCCTCGCCGGCTACTACCGCCGCTTCATCCGCGACTTCGGCGCTATCGCCGCGCCACTGACGGCGCTCCTCCGTAAAGAGGGGTTCCGTTGGTCCGACGAGGCGGCAGCGGCGTTCCGCAAGCTGCAACACGCTTTGACGGCGGCGCCAGTCCTTCAACTTCCGGATTTCAACCGCGACTTCATCGTCGAATGCGACGCGTCGGGTACGGGCCTTGGCGCCGTGCTCCACCAGGGCGGCGGTCCAGTCGCGTTCTTCAGCATGCCCATCGCCCCCCGTCACGCCAAGCTGGCCGCCTACGAGCGCGAATTGATCGGCCTCGTCAAGGCGGTCCGTCACTGGCGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCACGGACCATTATAGCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCACAGCATCATTGGGCGAGCAAGCTGCTGGGATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCGACGCCCTATCTCGCCGCGACGAACACTTGGCTGAAGCGTTTGTTCTATCGGCGCCGCACTTCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCATCCCTGGCAAGCCTCCGCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCGTACTCAAGGATCGGGTGTTTATCCCGGAGTC
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| CDS seq | ATGTACGCACGGTGTTGCAAACGCTGCAAGATCATTGCCTCCACCTCAAGCGCTCCAAGTGTGAGTTCGGCCTCACCTCCGTCGCATACCTGGGGCATGTCATCTCCAGTCCTTCAACTTCCGGATTTCAACCGCGACTTCATCGTCGAATGCGACGCGTCGGGTACGGGCCTTGGCGCCGTGCTCCACCAGGGCGGCGGTCCAGTCGCGTTCTTCAGCATGCCCATCGCCCCCCGTCACGCCAAGCTGGCCGCCTACGAGCGCGAATTGATCGGCCTCGTCAAGGCGGTCCGTCACTGGCGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCACGGACCATTATAGCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCACAGCATCATTGGGCGAGCAAGCTGCTGGGATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCGACGCCCTATCTCGCCGCGACGAACACTTGGCTGAAGCGTTTGTTCTATCGGCGCCGCACTTCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCATCCCTGGCAAGCCTCCGCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCGTACTCAAGGATCGGGTGTTTATCCCGGAGTC
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| Protein seq | MYARCCKRCKIIASTSSAPSVSSASPPSHTWGMSSPVLQLPDFNRDFIVECDASGTGLGAVLHQGGGPVAFFSMPIAPRHAKLAAYERELIGLVKAVRHWRPYLWGRRFIIRTDHYSLRFLLDQRLSTIPQHHWASKLLGFDFAVEYKPGTANVVADALSRRDEHLAEAFVLSAPHFSLLDDVRREVASTPSLASLRDDIIRGAKPPPWAFKDGLIVLKDRVFIPE |
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| Function | Retrovirus-related Pol polyprotein from transposon 297 [UniProtKB/Swiss-Prot:P20825] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0640100 | Os01t0640100-00 | Chr01 | 25710912 | 25712866 | + | irgsp1_rep | ||
| CDS seq | ATGTACGCACGGTGTTGCAAACGCTGCAAGATCATTGCCTCCACCTCAAGCGCTCCAAGTGTGAGTTCGGCCTCACCTCCGTCGCATACCTGGGGCATGTCATCTCCAGTCCTTCAACTTCCGGATTTCAACCGCGACTTCATCGTCGAATGCGACGCGTCGGGTACGGGCCTTGGCGCCGTGCTCCACCAGGGCGGCGGTCCAGTCGCGTTCTTCAGCATGCCCATCGCCCCCCGTCACGCCAAGCTGGCCGCCTACGAGCGCGAATTGATCGGCCTCGTCAAGGCGGTCCGTCACTGGCGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCACGGACCATTATAGCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCACAGCATCATTGGGCGAGCAAGCTGCTGGGATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCGACGCCCTATCTCGCCGCGACGAACACTTGGCTGAAGCGTTTGTTCTATCGGCGCCGCACTTCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCATCCCTGGCAAGCCTCCGCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCGTACTCAAGGATCGGGTGTTTATCCCGGAGTC
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| Protein seq | MYARCCKRCKIIASTSSAPSVSSASPPSHTWGMSSPVLQLPDFNRDFIVECDASGTGLGAVLHQGGGPVAFFSMPIAPRHAKLAAYERELIGLVKAVRHWRPYLWGRRFIIRTDHYSLRFLLDQRLSTIPQHHWASKLLGFDFAVEYKPGTANVVADALSRRDEHLAEAFVLSAPHFSLLDDVRREVASTPSLASLRDDIIRGAKPPPWAFKDGLIVLKDRVFIPE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0640100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45290 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0121200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034311 | RBH | 0.043118 | 2.382331 | 1.872674 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033831 | RBH | 0.076553 | 2.436650 | 1.151488 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0397900 | RBH | 0.043589 | 1.39208 | 0.3260805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0033031 | RBH | 0.043880 | 0.160660 | 0.697742 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0422000 | RBH | 0.209102 | 0.5616855 | 1.6265145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
