Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g49920 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:28669479-28673568 | ||||||||
| Gene Symbol | LRR-RLK | ||||||||||
| DNA seq | GAAAAATGAAAGTTTGTTTTCAAACGAAAAAGTCTAAAACGCTTTCTTCCTTTCACACATATTTCCACTAAAAAAAACAACTTTTTGACCATTCAACACAATGCACATGTCAATTGCACATCCCACACGGCCACACTTCCAATAAAACCACCAATAGAACCAGCACACTGCTCATGCGTAATTGTGTATCCTCATCATCAACCTTCATTCCTTCACTACCATGGCTCTTCTCTGCATCAGCATGGTGCTCCTCATCCTATTGGCACCATGCGCCACTTCACTCACCCCTCCATACAACAACACAGACCTCGCTGCACTGCTCGACTTCAAGGAGCAAGTCAAGGACCCTAATGGCATCCTTGCCAGCAATTGGACTGCCAGTGCACCCTTCTGCTCATGGATTGGGGTCTCATGCGACAGCAGCGGGAAGTGGGTCACTGGGCTTGAGTTTGAAGACATGGCACTTGAAGGAACCATCAGCCCGCAGATTGGCAATCTCTCCTTCCTCTCCAGCCTTGTACTCAGCAACACCACCCTCATCGGACCTGTGCCAACCGAGCTCGATAGGCTGCCCCGACTGCAAACTCTTGTTCTTTCATACAACAGCCTGTCAGGTACCATCCCCTCCATCCTTGGCAACCTCACAAGGCTCGAGTCTCTTTATCTTAATAGCAACAAATTCTTTGGGGGGATTCCACAAGAGTTGGCAAATCTTAACAATCTTCAGATATTAAGATTGTCAGATAACGACTTGAGCGGACCAATACCACAAGGCCTGTTCAATAACACACCCAACCTGAGTAGGATACAACTCGGGTCAAATAGGCTAACAGGAGCAATTCCTGGTAGCGTTGGATCATTGTCGAAGCTGGAGATGCTAGTCCTAGAAAATAATCTTCTCTCAGGCTCCATGCCTGCTGCTATCTTCAATATGTCCTACCTGCAAGCCATAGCAGTCACACGGAACAATCTCAGAGGTCCGATTCCTGGAAACGAGAGCTTTCACCTCCCTATGTTGGAATTTTTCTCTCTCGGTGAAAATTGGTTCGATGGACCTATCCCATCGGGCCCTTCCAAATGTCAAAACCTTGATTTGTTCTCCCTAGCTGTAAATAATTTCACAGGTTCTGTGCCATCATGGCTGGCGACAATGCCAAACCTCACTGCAATTTACTTGTCAACCAACGAGCTCACTGGAAAGATCCCAGTTGAACTGAGCAATCATACTGGGCTGCTTGCTTTGGACCTTAGCGAGAACAATCTAGAGGGAGAAATACCACCAGAGTTTGGACAGCTGAGAAACCTCAGGTATATAAGCTTTGCAAACAACCAAATAACAGGTACCATTCCCGAATCTATAGGCAATCTCTGACCTCACCACAATAGATTTGTTCGTAAACGGATTAACTGGATCGGTGCCAATGTCATTTGGGAACTTGTGGAATCTTCGTGACATCTATGTTGATGGGAACCAGCTCAGTGGGAACCTTGAATTCCTAGCTGCATTATCAAATTGCAGTAATCTGAACACAATTGGCATGTCATACAATAGATTTGAAGGGAGTTTACTACCCTGTGTTGGAAACCTTAGCACACTGATCGAAATTTTTGTAGCAGACAACAATAGGATCACTGGAAGCATCCCCAGTACATTGGCTAAGCTTACCAACCTACTGATGCTATCTCTCAGAGGAAACCAGCTAAGCGGGATGATCCCCACGCAGATCACATCAATGAACAACCTCCAAGAACTCAATCTCTCCAACAACACCTTGTCTGGCACCATCCCAGTAGAAATCACTGGATTAACAAGTCTAGTTAAGCTGAATCTTGCTAACAATCAACTTGTCAGTCCTATTCCAAGTACCATCGGTAGCCTAAACCAGTTACAAGTTGTGGTATTGTCCCAAAACTCGTTGTCTTCAACAATACCAATTAGTTTGTGGCATCTTCAGAAACTTATTGAGCTTGATTTATCACAGAACTCTTTGAGTGGTTCTCTACCTGCTGATGTTGGAAAACTGACAGCAATTACTAAGATGGATCTATCAAGAAACCAGCTATCAGGTGATATACCATTTTCTTTTGGTGAACTCCAGATGATGATCTATATGAATCTATCCAGTAATCTACTCCAAGGTTCAATACCAGATTCAGTTGGCAAGTTACTAAGTATTGAGGAGTTAGACCTTTCCTCCAATGTGCTTTCGGGTGTCATCCCAAAGTCCTTGGCCAATCTCACTTATCTTGCCAATTTGAACCTATCTTTCAATAGACTGGAGGGTCAGATACCAGAAGGAGGTGTGTTCTCAAACATCACTGTCAAGTCATTGATGGGAAACAAGGCACTATGTGGCCTTCCGAGCCAAGGAATAGAATCATGCCAGAGCAAAACTCACTCAAGGTCAATACAACGGCTACTAAAATTCATATTACCTGCAGTTGTGGCATTTTTTATTTTAGCATTTTGCTTGTGTATGTTGGTAAGAAGGAAAATGAATAAGCCAGGAAAGATGCCACTACCCTCAGATGCAGACTTGCTGAATTACCAGTTAATCTCATACCATGAACTTGTCCGTGCAACAAGAAACTTCAGTGATGATAACCTGCTAGGGAGTGGAAGCTTTGGTAAAGTCTTCAAAGGCCAGCTAGATGATGAGTCCATTGTCACAATAAAGGTCCTAAACATGCAACAGGAAGTAGCTTCCAAAAGCTTTGACACAGAGTGCCGCGTGTTACGAATGGCTCATCACCGCAACTTGGTGAGGATTGTTAGCACTTGCTCTAATCTTGACTTCAAAGCACTAGTTCTTGAGTATATGCCCAATGGAAGTTTGGATAATTGGTTGTACTCAAATGATGGGCTGCACCTCAGTTTCATCCAAAGGCTCAGTGTCATGCTGGATGTTGCGATGGCAATGGAGTATCTACACCACCATCACTTTGAGGTTGTCCTGCATTTTGATTTAAAGCCAAGCAATATTTTGCTTGACAATGATATGGTTGCACATGTTGCCGACTTCGGAATTTCCAAGTTGCTGTTTGGAGATGACAACTCTATCACATTAACGAGTATGCCAGGCACTGTAGGATACATGGCACCAGGTGATAACCCTTGTAAAGTCTGTACAATCTGTATTCTTGTTTCATCTAACTTAAGCTGACCAGTTCTCTTTTGACATGGTGCAAACAGAGTTAGGATCAACAGGAAAAGCATCACGCAGAAGTGACGTATACAGCTACGGAATTGTCCTCCTCGAAGTCTTCACAAGGAAAAAACCAACTGATCCAATGTTCGTCAATGAGTTGACCTTCAGGCAATGGATTAGTCAAGCATTCCCATATGAGCTCTCAAATGTCGCCGACTGTAGTCTACAACAAGATGGTCATACGGGTGGTACTGAGGATTCGAGTAAGCTATCTGAGGATTCAATCATCTTGAATATCTGTCTAGCATCCATAATTGAGTTGGGCTTGCTTTGCTCAAGAGATGCACCTGATGACAGAGTTCCAATGAATGAAGTAGTTATCAAGTTAAACAAGATCAAGTCAAATTACTACTCTCTGTGGAAGCAATGGAGCTCACCTGGTGAAATATCCTGAAATACCCTCTTTAGTGCATCTGGAAACTAATCAAAATGGTTCAGAAGAAAAGAACTCTGAGGAATTATAATAGGTTTTTACAATTGACAAGTCCATATAAAAGGCTTTATGTAAGTAGTATCAGTTGCAAATTGCAAATCTGAGCCACACGCTTGTAATGAATCAAAAGAGAGGAATAGACATATCTTTTCATTAAATGCAAATCACTGCAGAACTATGGATAGTGCAGGAGGAGGTTGAGGCTCTGTTGAAGGCTTGAGAAGATGGTTTGCAGCAAAAATGCTCTGATCAACTAATCAACTAGCAAAAGGTGACATATAAATGCTTTCGCATACAGGGTCAGGTTATGCCACAGAGCAAAGCTAGGTAGCTTTTGAATTTTGGCTTAGGCCCTGTTAGTTCCCACACAAAAACTTTTCACCCTGTCACATCGAATGTTTGGACACATACATGGAGTATTAAATATAGACAAAAAAACTAATTACAC
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| CDS seq | ATGTCATTTGGGAACTTGTGGAATCTTCGTGACATCTATGTTGATGGGAACCAGCTCAGTGGGAACCTTGAATTCCTAGCTGCATTATCAAATTGCAGTAATCTGAACACAATTGGCATGTCATACAATAGATTTGAAGGGAGTTTACTACCCTGTGTTGGAAACCTTAGCACACTGATCGAAATTTTTGTAGCAGACAACAATAGGATCACTGGAAGCATCCCCAGTACATTGGCTAAGCTTACCAACCTACTGATGCTATCTCTCAGAGGAAACCAGCTAAGCGGGATGATCCCCACGCAGATCACATCAATGAACAACCTCCAAGAACTCAATCTCTCCAACAACACCTTGTCTGGCACCATCCCAGTAGAAATCACTGGATTAACAAGTCTAGTTAAGCTGAATCTTGCTAACAATCAACTTGTCAGTCCTATTCCAAGTACCATCGGTAGCCTAAACCAGTTACAAGTTGTGGTATTGTCCCAAAACTCGTTGTCTTCAACAATACCAATTAGTTTGTGGCATCTTCAGAAACTTATTGAGCTTGATTTATCACAGAACTCTTTGAGTGGTTCTCTACCTGCTGATGTTGGAAAACTGACAGCAATTACTAAGATGGATCTATCAAGAAACCAGCTATCAGGTGATATACCATTTTCTTTTGGTGAACTCCAGATGATGATCTATATGAATCTATCCAGTAATCTACTCCAAGGTTCAATACCAGATTCAGTTGGCAAGTTACTAAGTATTGAGGAGTTAGACCTTTCCTCCAATGTGCTTTCGGGTGTCATCCCAAAGTCCTTGGCCAATCTCACTTATCTTGCCAATTTGAACCTATCTTTCAATAGACTGGAGGGTCAGATACCAGAAGGAGGTGTGTTCTCAAACATCACTGTCAAGTCATTGATGGGAAACAAGGCACTATGTGGCCTTCCGAGCCAAGGAATAGAATCATGCCAGAGCAAAACTCACTCAAGGTCAATACAACGGCTACTAAAATTCATATTACCTGCAGTTGTGGCATTTTTTATTTTAGCATTTTGCTTGTGTATGTTGGTAAGAAGGAAAATGAATAAGCCAGGAAAGATGCCACTACCCTCAGATGCAGACTTGCTGAATTACCAGTTAATCTCATACCATGAACTTGTCCGTGCAACAAGAAACTTCAGTGATGATAACCTGCTAGGGAGTGGAAGCTTTGGTAAAGTCTTCAAAGGCCAGCTAGATGATGAGTCCATTGTCACAATAAAGGTCCTAAACATGCAACAGGAAGTAGCTTCCAAAAGCTTTGACACAGAGTGCCGCGTGTTACGAATGGCTCATCACCGCAACTTGGTGAGGATTGTTAGCACTTGCTCTAATCTTGACTTCAAAGCACTAGTTCTTGAGTATATGCCCAATGGAAGTTTGGATAATTGGTTGTACTCAAATGATGGGCTGCACCTCAGTTTCATCCAAAGGCTCAGTGTCATGCTGGATGTTGCGATGGCAATGGAGTATCTACACCACCATCACTTTGAGGTTGTCCTGCATTTTGATTTAAAGCCAAGCAATATTTTGCTTGACAATGATATGGTTGCACATGTTGCCGACTTCGGAATTTCCAAGTTGCTGTTTGGAGATGACAACTCTATCACATTAACGAGTATGCCAGGCACTGTAGGATACATGGCACCAGAGTTAGGATCAACAGGAAAAGCATCACGCAGAAGTGACGTATACAGCTACGGAATTGTCCTCCTCGAAGTCTTCACAAGGAAAAAACCAACTGATCCAATGTTCGTCAATGAGTTGACCTTCAGGCAATGGATTAGTCAAGCATTCCCATATGAGCTCTCAAATGTCGCCGACTGTAGTCTACAACAAGATGGTCATACGGGTGGTACTGAGGATTCGAGTAAGCTATCTGAGGATTCAATCATCTTGAATATCTGTCTAGCATCCATAATTGAGTTGGGCTTGCTTTGCTCAAGAGATGCACCTGATGACAGAGTTCCAATGAATGAAGTAGTTATCAAGTTAAACAAGATCAAGTCAAATTACTACTCTCTGTGGAAGCAATGGAGCTCACCTGGTGAAATATCCTGA
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| Protein seq | MSFGNLWNLRDIYVDGNQLSGNLEFLAALSNCSNLNTIGMSYNRFEGSLLPCVGNLSTLIEIFVADNNRITGSIPSTLAKLTNLLMLSLRGNQLSGMIPTQITSMNNLQELNLSNNTLSGTIPVEITGLTSLVKLNLANNQLVSPIPSTIGSLNQLQVVVLSQNSLSSTIPISLWHLQKLIELDLSQNSLSGSLPADVGKLTAITKMDLSRNQLSGDIPFSFGELQMMIYMNLSSNLLQGSIPDSVGKLLSIEELDLSSNVLSGVIPKSLANLTYLANLNLSFNRLEGQIPEGGVFSNITVKSLMGNKALCGLPSQGIESCQSKTHSRSIQRLLKFILPAVVAFFILAFCLCMLVRRKMNKPGKMPLPSDADLLNYQLISYHELVRATRNFSDDNLLGSGSFGKVFKGQLDDESIVTIKVLNMQQEVASKSFDTECRVLRMAHHRNLVRIVSTCSNLDFKALVLEYMPNGSLDNWLYSNDGLHLSFIQRLSVMLDVAMAMEYLHHHHFEVVLHFDLKPSNILLDNDMVAHVADFGISKLLFGDDNSITLTSMPGTVGYMAPELGSTGKASRRSDVYSYGIVLLEVFTRKKPTDPMFVNELTFRQWISQAFPYELSNVADCSLQQDGHTGGTEDSSKLSEDSIILNICLASIIELGLLCSRDAPDDRVPMNEVVIKLNKIKSNYYSLWKQWSSPGEIS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g49920 | LOC_Os01g49920.1 | Chr01 | 28669479 | 28673568 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCATTTGGGAACTTGTGGAATCTTCGTGACATCTATGTTGATGGGAACCAGCTCAGTGGGAACCTTGAATTCCTAGCTGCATTATCAAATTGCAGTAATCTGAACACAATTGGCATGTCATACAATAGATTTGAAGGGAGTTTACTACCCTGTGTTGGAAACCTTAGCACACTGATCGAAATTTTTGTAGCAGACAACAATAGGATCACTGGAAGCATCCCCAGTACATTGGCTAAGCTTACCAACCTACTGATGCTATCTCTCAGAGGAAACCAGCTAAGCGGGATGATCCCCACGCAGATCACATCAATGAACAACCTCCAAGAACTCAATCTCTCCAACAACACCTTGTCTGGCACCATCCCAGTAGAAATCACTGGATTAACAAGTCTAGTTAAGCTGAATCTTGCTAACAATCAACTTGTCAGTCCTATTCCAAGTACCATCGGTAGCCTAAACCAGTTACAAGTTGTGGTATTGTCCCAAAACTCGTTGTCTTCAACAATACCAATTAGTTTGTGGCATCTTCAGAAACTTATTGAGCTTGATTTATCACAGAACTCTTTGAGTGGTTCTCTACCTGCTGATGTTGGAAAACTGACAGCAATTACTAAGATGGATCTATCAAGAAACCAGCTATCAGGTGATATACCATTTTCTTTTGGTGAACTCCAGATGATGATCTATATGAATCTATCCAGTAATCTACTCCAAGGTTCAATACCAGATTCAGTTGGCAAGTTACTAAGTATTGAGGAGTTAGACCTTTCCTCCAATGTGCTTTCGGGTGTCATCCCAAAGTCCTTGGCCAATCTCACTTATCTTGCCAATTTGAACCTATCTTTCAATAGACTGGAGGGTCAGATACCAGAAGGAGGTGTGTTCTCAAACATCACTGTCAAGTCATTGATGGGAAACAAGGCACTATGTGGCCTTCCGAGCCAAGGAATAGAATCATGCCAGAGCAAAACTCACTCAAGGTCAATACAACGGCTACTAAAATTCATATTACCTGCAGTTGTGGCATTTTTTATTTTAGCATTTTGCTTGTGTATGTTGGTAAGAAGGAAAATGAATAAGCCAGGAAAGATGCCACTACCCTCAGATGCAGACTTGCTGAATTACCAGTTAATCTCATACCATGAACTTGTCCGTGCAACAAGAAACTTCAGTGATGATAACCTGCTAGGGAGTGGAAGCTTTGGTAAAGTCTTCAAAGGCCAGCTAGATGATGAGTCCATTGTCACAATAAAGGTCCTAAACATGCAACAGGAAGTAGCTTCCAAAAGCTTTGACACAGAGTGCCGCGTGTTACGAATGGCTCATCACCGCAACTTGGTGAGGATTGTTAGCACTTGCTCTAATCTTGACTTCAAAGCACTAGTTCTTGAGTATATGCCCAATGGAAGTTTGGATAATTGGTTGTACTCAAATGATGGGCTGCACCTCAGTTTCATCCAAAGGCTCAGTGTCATGCTGGATGTTGCGATGGCAATGGAGTATCTACACCACCATCACTTTGAGGTTGTCCTGCATTTTGATTTAAAGCCAAGCAATATTTTGCTTGACAATGATATGGTTGCACATGTTGCCGACTTCGGAATTTCCAAGTTGCTGTTTGGAGATGACAACTCTATCACATTAACGAGTATGCCAGGCACTGTAGGATACATGGCACCAGAGTTAGGATCAACAGGAAAAGCATCACGCAGAAGTGACGTATACAGCTACGGAATTGTCCTCCTCGAAGTCTTCACAAGGAAAAAACCAACTGATCCAATGTTCGTCAATGAGTTGACCTTCAGGCAATGGATTAGTCAAGCATTCCCATATGAGCTCTCAAATGTCGCCGACTGTAGTCTACAACAAGATGGTCATACGGGTGGTACTGAGGATTCGAGTAAGCTATCTGAGGATTCAATCATCTTGAATATCTGTCTAGCATCCATAATTGAGTTGGGCTTGCTTTGCTCAAGAGATGCACCTGATGACAGAGTTCCAATGAATGAAGTAGTTATCAAGTTAAACAAGATCAAGTCAAATTACTACTCTCTGTGGAAGCAATGGAGCTCACCTGGTGAAATATCCTGA
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| Protein seq | MSFGNLWNLRDIYVDGNQLSGNLEFLAALSNCSNLNTIGMSYNRFEGSLLPCVGNLSTLIEIFVADNNRITGSIPSTLAKLTNLLMLSLRGNQLSGMIPTQITSMNNLQELNLSNNTLSGTIPVEITGLTSLVKLNLANNQLVSPIPSTIGSLNQLQVVVLSQNSLSSTIPISLWHLQKLIELDLSQNSLSGSLPADVGKLTAITKMDLSRNQLSGDIPFSFGELQMMIYMNLSSNLLQGSIPDSVGKLLSIEELDLSSNVLSGVIPKSLANLTYLANLNLSFNRLEGQIPEGGVFSNITVKSLMGNKALCGLPSQGIESCQSKTHSRSIQRLLKFILPAVVAFFILAFCLCMLVRRKMNKPGKMPLPSDADLLNYQLISYHELVRATRNFSDDNLLGSGSFGKVFKGQLDDESIVTIKVLNMQQEVASKSFDTECRVLRMAHHRNLVRIVSTCSNLDFKALVLEYMPNGSLDNWLYSNDGLHLSFIQRLSVMLDVAMAMEYLHHHHFEVVLHFDLKPSNILLDNDMVAHVADFGISKLLFGDDNSITLTSMPGTVGYMAPELGSTGKASRRSDVYSYGIVLLEVFTRKKPTDPMFVNELTFRQWISQAFPYELSNVADCSLQQDGHTGGTEDSSKLSEDSIILNICLASIIELGLLCSRDAPDDRVPMNEVVIKLNKIKSNYYSLWKQWSSPGEIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.452961 | 0.126096 | 0.095956 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0694000 | SBH | 0.512809 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49910 | RBH | 0.346584 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0694000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030000 | RBH | 0.546572 | 2.267069 | 0.128725 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029600 | RBH | 0.000000 | 0.124209 | 0.146467 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029990 | RBH | 0.0 | 1.068399 | 2.914420 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029200 | RBH | 0.0 | 0.029609 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028910 | RBH | 0.0 | 0.000000 | 2.125311 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0476500 | RBH | 0.200424 | 7.1949225 | 4.7634875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028620 | RBH | 0.082367 | 0.178108 | 0.039281 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0466900 | RBH | 0.5841335 | 1.290796 | 6.307256 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028880 | RBH | 0.016680 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028800 | RBH | 0.000000 | 2.478942 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029090 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029240 | RBH | 0.085185 | 0.423978 | 0.142664 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029040 | RBH | 0.018302 | 1.806314 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029500 | RBH | 0.000000 | 0.000000 | 0.146676 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029170 | RBH | 0.000000 | 4.007949 | 0.201346 |
